Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0007116

Physical Location & Seq

Genomic Coordinates Reverse (-)

10264992 .. 10266570

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G173500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGCCTATTGGTGATGACCAAGTTGAGCAATCTTCAAGCAGGAAGGAGAACAATGTGGAGGAAGCAAATCATCTCTTGGAAGAGTGTTGGTTTTTTGACAACTTGCTCAACAGGAAGCAGAAGATGTTGAGGTGTTATTCTGATCCTCAATGCAATTCATCAAACTTTGGTCAAGAAATGTCAGTGAAGAGTTCACATGACCAAAAGTCCTTGTTGACAACAAGTAAGGCCACACAAGGCAATGGCTTTGCTGGTCCTAATTTGGTTAGAACACCATCTTTGCCTCTTCATATAGGGAGGAGGCAAGAGGAAGAAGTTCAAGTAAAGCAAAGTGGTAGTAATAAGAGTTCGAGCAAATTGACAAGGCAAACATCACATCAGAAAATGCTGCAGACACCAACCAAATCACCAGCTTGTATAGGCAGGACAGAAGGAGTTCAAGATAAGGAAAGCGATAACAGAAGAAGCAAAATGAATGGGCAGCCAGTGCGCCAGAATTTGCTCAGGACACCCTCCTTGCCACCATGTATAGGAAGGGAAGAGAGCAACCAAGAAAGTCTTCCTCAGAGACATAAGGGGCTCATGACACAAACTTCTAGCATTCCAAGATATAGACCACCAAAAAACACAGAAGGGGAAAGCAATGCTAGTACAGATGGGTGCAAGGAAATGAGACGCAGAAGCCTTAACCAGTTAACCACGAGAAAGAGCCTAAGTGATCTTGAGATTGAAGAGCTGCAAGGGTTCAAGGACCTGGGATTCACATTTGACAAGAAAGAACTGAGCCCCAGTGTGGTTAACATACTTCCTGGTTTGCAAGAAAAGAAGAGAACAGAGGATTTGAACCCAGAAAAGGTTAGGAGGCCTTATCTTTCTGAAGCATGGCTGGTGCAAAGCTGTGCTCCTCCACCTCCAAACTTGGGTGCAAGTAGGTCTGCTGAAGACATGAAGGCACAGATCAAGTTCTGGGCTAGAGCTGTGGCTTCTAATGTGCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1685

Protein Analysis

334

Amino Acids

37.55

Weight (kDa)

9.27

Isoelectric Point (pI)

79.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007116)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53180 AT1G53180 AT1G53180 AT3G15115
fragaria_vesca	FvH4_3g19190
malus_domestica	MD03G1235500.v1.1 MD11G1256500.v1.1
prunus_persica	Prupe.4G173500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0032271
rosa_laevigata	RLG00000033376
rosa_multiflora	Rmu_sc0018683.1_g000003 Rmu_sc0038270.1_g000003 Rmu_sc0042408.1_g000001 Rmu_ssc0000013.1_g000002
rosa_roxburghii	Rroxscaffold_1G00048190
rosa_rugosa	Rorug05G0130200
rosa_samantha	Rh2BG363800 Rh3BG343800 Rh5AG224100 Rh5AG444800 Rh5BG224800 Rh5BG228900 Rh5CG250200 Rh5DG229400
rosa_wichuraiana	Rw5G020440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	499
AcuI	CTGAAG	2 cut(s)	900, 963
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	4 cut(s)	533, 796, 856, 923
AgsI	TTSAA	6 cut(s)	39, 323, 443, 734, 751, 847
AhdI	GACNNNNNGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	756, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	546, 578
AluBI	AGCT	4 cut(s)	416, 739, 900, 980
AluI	AGCT	4 cut(s)	416, 739, 900, 980
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	2 cut(s)	565, 670
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	2 cut(s)	231, 866
ApeKI	GCWGC	3 cut(s)	391, 484, 739
ApoI	RAATTY	1 cut(s)	499
Asp700I	GAANNNNTTC	3 cut(s)	318, 438, 561
AspLEI	GCGC	2 cut(s)	495, 999
AspS9I	GGNCC	2 cut(s)	257, 754
AsuHPI	GGTGA	2 cut(s)	26, 402
AvaII	GGWCC	2 cut(s)	257, 754
BanII	GRGCYC	2 cut(s)	585, 791
BauI	CACGAG	1 cut(s)	703
BbsI	GAAGAC	2 cut(s)	554, 951
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	3 cut(s)	378, 496, 726
BccI	CCATC	2 cut(s)	286, 653
BciT130I	CCWGG	2 cut(s)	758, 813
BcoDI	GTCTC	2 cut(s)	565, 670
BfaI	CTAG	4 cut(s)	600, 651, 975, 1000
BfmI	CTRYAG	1 cut(s)	392
BisI	GCNGC	3 cut(s)	392, 485, 740
BlsI	GCNGC	3 cut(s)	393, 486, 741
Bme1390I	CCNGG	2 cut(s)	758, 813
Bme18I	GGWCC	2 cut(s)	257, 754
BmeRI	GACNNNNNGTC	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	257, 754
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	758, 813
BmrI	ACTGGG	1 cut(s)	786
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	2 cut(s)	554, 951
Bpu10I	CCTNAGC	1 cut(s)	506
BpuEI	CTTGAG	1 cut(s)	746
BsaJI	CCNNGG	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	4 cut(s)	533, 796, 856, 923
Bse1I	ACTGG	3 cut(s)	488, 694, 792
Bse3DI	GCAATG	2 cut(s)	250, 652
BseBI	CCWGG	2 cut(s)	758, 813
BseDI	CCNNGG	1 cut(s)	757
BseLI	CCNNNNNNNGG	4 cut(s)	533, 796, 856, 923
BseMI	GCAATG	2 cut(s)	250, 652
BseMII	CTCAG	3 cut(s)	520, 581, 776
BseNI	ACTGG	3 cut(s)	488, 694, 792
BseRI	GAGGAG	2 cut(s)	316, 897
BseXI	GCAGC	3 cut(s)	378, 496, 726
BshFI	GGCC	2 cut(s)	233, 868
BsiHKAI	GWGCWC	1 cut(s)	907
BslI	CCNNNNNNNGG	4 cut(s)	533, 796, 856, 923
BsmAI	GTCTC	2 cut(s)	565, 670
BsmBI	CGTCTC	1 cut(s)	670
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	233, 868
Bsp1286I	GDGCHC	3 cut(s)	585, 791, 907
Bsp143I	GATC	3 cut(s)	145, 721, 960
BspANI	GGCC	2 cut(s)	233, 868
BspCNI	CTCAG	3 cut(s)	519, 580, 777
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	396
BspPI	GGATC	1 cut(s)	140
BspQI	GCTCTTC	1 cut(s)	729
BsrDI	GCAATG	2 cut(s)	250, 652
BsrI	ACTGG	3 cut(s)	488, 694, 792
BssECI	CCNNGG	1 cut(s)	757
BssMI	GATC	3 cut(s)	145, 721, 960
BssSI	CACGAG	1 cut(s)	703
Bst2BI	CACGAG	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	758, 813
Bst6I	CTCTTC	6 cut(s)	78, 185, 294, 537, 729, 824
BstAPI	GCANNNNNTGC	1 cut(s)	490
BstDEI	CTNAG	4 cut(s)	506, 567, 716, 785
BstHHI	GCGC	2 cut(s)	495, 999
BstKTI	GATC	3 cut(s)	148, 724, 963
BstMAI	GTCTC	2 cut(s)	565, 670
BstMBI	GATC	3 cut(s)	145, 721, 960
BstMWI	GCNNNNNNNGC	1 cut(s)	490
BstNI	CCWGG	2 cut(s)	758, 813
BstSCI	CCNGG	2 cut(s)	756, 811
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	3 cut(s)	378, 496, 726
BstV2I	GAAGAC	2 cut(s)	554, 951
BsuRI	GGCC	2 cut(s)	233, 868
BtsIMutI	CAGTG	3 cut(s)	192, 495, 799
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	2 cut(s)	495, 999
Cfr13I	GGNCC	2 cut(s)	257, 754
CseI	GACGC	1 cut(s)	687
Csp6I	GTAC	1 cut(s)	654
CviAII	CATG	5 cut(s)	200, 528, 586, 885, 949
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	4 cut(s)	506, 567, 716, 785
DpnI	GATC	3 cut(s)	147, 723, 962
DpnII	GATC	3 cut(s)	145, 721, 960
DriI	GACNNNNNGTC	1 cut(s)	208
Eam1104I	CTCTTC	6 cut(s)	78, 185, 294, 537, 729, 824
Eam1105I	GACNNNNNGTC	1 cut(s)	208
EarI	CTCTTC	6 cut(s)	78, 185, 294, 537, 729, 824
Eco147I	AGGCCT	1 cut(s)	868
Eco24I	GRGCYC	2 cut(s)	585, 791
Eco47I	GGWCC	2 cut(s)	257, 754
Eco57I	CTGAAG	2 cut(s)	900, 963
EcoO109I	RGGNCCY	1 cut(s)	754
EcoRII	CCWGG	2 cut(s)	756, 811
EcoT38I	GRGCYC	2 cut(s)	585, 791
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	5 cut(s)	203, 531, 589, 888, 952
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FatI	CATG	5 cut(s)	199, 527, 585, 884, 948
Fnu4HI	GCNGC	3 cut(s)	392, 485, 740
FriOI	GRGCYC	2 cut(s)	585, 791
Fsp4HI	GCNGC	3 cut(s)	392, 485, 740
FspBI	CTAG	4 cut(s)	600, 651, 975, 1000
GlaI	GCGC	2 cut(s)	494, 998
GluI	GCNGC	3 cut(s)	392, 485, 740
HaeIII	GGCC	2 cut(s)	233, 868
HgaI	GACGC	1 cut(s)	687
HhaI	GCGC	2 cut(s)	495, 999
Hin1II	CATG	5 cut(s)	203, 531, 589, 888, 952
Hin6I	GCGC	2 cut(s)	493, 997
HinP1I	GCGC	2 cut(s)	493, 997
HincII	GTYRAC	3 cut(s)	219, 699, 802
HindII	GTYRAC	3 cut(s)	219, 699, 802
HinfI	GANTC	1 cut(s)	762
HpaI	GTTAAC	2 cut(s)	699, 802
HphI	GGTGA	2 cut(s)	26, 402
Hpy166II	GTNNAC	4 cut(s)	197, 219, 699, 802
Hpy188I	TCNGA	4 cut(s)	145, 384, 570, 880
Hpy188III	TCNNGA	5 cut(s)	176, 443, 508, 586, 725
Hpy8I	GTNNAC	4 cut(s)	197, 219, 699, 802
HpyAV	CCTTC	5 cut(s)	40, 428, 531, 629, 946
HpyCH4V	TGCA	7 cut(s)	156, 394, 666, 742, 820, 895, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	490
HpyF3I	CTNAG	4 cut(s)	506, 567, 716, 785
Hsp92II	CATG	5 cut(s)	203, 531, 589, 888, 952
HspAI	GCGC	2 cut(s)	493, 997
KspAI	GTTAAC	2 cut(s)	699, 802
Kzo9I	GATC	3 cut(s)	145, 721, 960
LguI	GCTCTTC	1 cut(s)	729
LmnI	GCTCC	2 cut(s)	4, 910
Lsp1109I	GCAGC	3 cut(s)	378, 496, 726
MaeI	CTAG	4 cut(s)	600, 651, 975, 1000
MalI	GATC	3 cut(s)	147, 723, 962
MboI	GATC	3 cut(s)	145, 721, 960
MhlI	GDGCHC	3 cut(s)	585, 791, 907
MluCI	AATT	4 cut(s)	157, 262, 359, 499
MroXI	GAANNNNTTC	3 cut(s)	318, 438, 561
MseI	TTAA	3 cut(s)	690, 698, 801
MspR9I	CCNGG	2 cut(s)	758, 813
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	758, 813
MwoI	GCNNNNNNNGC	1 cut(s)	490
NdeII	GATC	3 cut(s)	145, 721, 960
NlaIII	CATG	5 cut(s)	203, 531, 589, 888, 952
NlaIV	GGNNCC	1 cut(s)	6
PagI	TCATGA	1 cut(s)	585
PceI	AGGCCT	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	729
PctI	GAATGC	1 cut(s)	603
PdmI	GAANNNNTTC	3 cut(s)	318, 438, 561
PfeI	GAWTC	1 cut(s)	762
PkrI	GCNGC	3 cut(s)	393, 486, 741
PpuMI	RGGWCCY	1 cut(s)	754
Psp5II	RGGWCCY	1 cut(s)	754
Psp6I	CCWGG	2 cut(s)	756, 811
PspGI	CCWGG	2 cut(s)	756, 811
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	257, 754
PspPPI	RGGWCCY	1 cut(s)	754
PsrI	GAACNNNNNNTAC	2 cut(s)	334, 366
PstI	CTGCAG	1 cut(s)	396
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
SapI	GCTCTTC	1 cut(s)	729
SaqAI	TTAA	3 cut(s)	690, 698, 801
SatI	GCNGC	3 cut(s)	392, 485, 740
Sau3AI	GATC	3 cut(s)	145, 721, 960
Sau96I	GGNCC	2 cut(s)	257, 754
ScrFI	CCNGG	2 cut(s)	758, 813
SduI	GDGCHC	3 cut(s)	585, 791, 907
SetI	ASST	9 cut(s)	137, 418, 741, 759, 861, 902, 916, 938, 982
SfcI	CTRYAG	1 cut(s)	392
SinI	GGWCC	2 cut(s)	257, 754
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	4 cut(s)	157, 262, 359, 499
SseBI	AGGCCT	1 cut(s)	868
SspMI	CTAG	4 cut(s)	600, 651, 975, 1000
StuI	AGGCCT	1 cut(s)	868
StyD4I	CCNGG	2 cut(s)	756, 811
TaqI	TCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	157, 262, 359, 499
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	1 cut(s)	762
Tru1I	TTAA	3 cut(s)	690, 698, 801
Tru9I	TTAA	3 cut(s)	690, 698, 801
TscAI	CASTG	3 cut(s)	192, 495, 799
TseI	GCWGC	3 cut(s)	391, 484, 739
TspDTI	ATGAA	4 cut(s)	150, 281, 491, 965
TspRI	CASTG	3 cut(s)	192, 495, 799
VpaK11BI	GGWCC	2 cut(s)	257, 754
XapI	RAATTY	1 cut(s)	499
XmnI	GAANNNNTTC	3 cut(s)	318, 438, 561
XspI	CTAG	4 cut(s)	600, 651, 975, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.