Rh3BG343800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007116
Physical Location & Seq
Forward (+)
37152659 .. 37153138
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG343800.1

Sequence Viewer

Length: 480 bp
ATGTGTTTGAAAGAATTGCACAGCCCACATGTACGATTTATATGGCGTCGTGTTTTTGTCTTCCGCGTGTCTTCTTCTCTTTTCTCCACCGAACGACTGCTGGGGGGAGAGAGGTTAAGGCGTGTGATTTTTCCAGACCTCATATCTGTTTTGTCCAAAAGACTGAAATTCATCTCTGAGACAAATTGTTTGAAAGAATTGCACAGCCCACACGTACGATTTATATGGCGCCGTGTTTTCATCTTCCGCGTGTCTTCTTCTCTTTTCTCCACCGAACGATTGCTGGGGGGAGAGAGGTTAAGGTGTGTGATTTTTCCAGACCTCATATCTGTTTTGTCCAAAAGACTGAAATTCATCACTGAGACAAAAAGAGAAGAAACAAGAACAAGAATAAAGGAGCATGCAATTCTTCGCAGTTTGATAAGGTTGGTAATTCAATTTCATTTGTTTTCCATAATTGGAAGAGCTGGAGTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.87

Weight (kDa)

11.57

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AccII CGCG 2 cut(s) 66, 249
AciI CCGC 2 cut(s) 64, 247
AcsI RAATTY 2 cut(s) 167, 350
AcyI GRCGYC 2 cut(s) 46, 229
AfaI GTAC 2 cut(s) 33, 216
AflIII ACRYGT 2 cut(s) 28, 211
AgsI TTSAA 3 cut(s) 10, 193, 437
AluBI AGCT 1 cut(s) 467
AluI AGCT 1 cut(s) 467
Alw26I GTCTC 2 cut(s) 173, 356
ApoI RAATTY 2 cut(s) 167, 350
ArsI GACNNNNNNTTYG 2 cut(s) 172, 204
AspLEI GCGC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 228
BbsI GAAGAC 3 cut(s) 52, 63, 246
BceAI ACGGC 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 173, 356
BfoI RGCGCY 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 230
BpiI GAAGAC 3 cut(s) 52, 63, 246
BsaAI YACGTR 1 cut(s) 214
BsaHI GRCGYC 2 cut(s) 46, 229
BseMII CTCAG 2 cut(s) 168, 351
BseYI CCCAGC 2 cut(s) 100, 283
Bsh1236I CGCG 2 cut(s) 66, 249
BshNI GGYRCC 1 cut(s) 228
BsiWI CGTACG 1 cut(s) 214
BsmAI GTCTC 2 cut(s) 173, 356
BspACI CCGC 2 cut(s) 64, 247
BspCNI CTCAG 2 cut(s) 169, 352
BspFNI CGCG 2 cut(s) 66, 249
BspLI GGNNCC 1 cut(s) 230
BspQI GCTCTTC 1 cut(s) 457
BspT107I GGYRCC 1 cut(s) 228
BssNI GRCGYC 2 cut(s) 46, 229
Bst6I CTCTTC 1 cut(s) 457
BstACI GRCGYC 2 cut(s) 46, 229
BstBAI YACGTR 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 2 cut(s) 177, 360
BstFNI CGCG 2 cut(s) 66, 249
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstMAI GTCTC 2 cut(s) 173, 356
BstNSI RCATGY 2 cut(s) 32, 404
BstUI CGCG 2 cut(s) 66, 249
BstV2I GAAGAC 3 cut(s) 52, 63, 246
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 1 cut(s) 231
CseI GACGC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 32, 215
CviAII CATG 2 cut(s) 29, 401
CviJI RGCY 3 cut(s) 24, 207, 467
CviKI_1 RGCY 3 cut(s) 24, 207, 467
CviQI GTAC 2 cut(s) 32, 215
DdeI CTNAG 2 cut(s) 177, 360
DinI GGCGCC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
FaeI CATG 2 cut(s) 32, 404
FaiI YATR 9 cut(s) 30, 41, 43, 143, 224, 226, 326, 402, 455
FatI CATG 2 cut(s) 28, 400
GlaI GCGC 1 cut(s) 230
GsaI CCCAGC 2 cut(s) 104, 287
HaeII RGCGCY 1 cut(s) 232
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 2 cut(s) 46, 229
Hin1II CATG 2 cut(s) 32, 404
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HinfI GANTC 1 cut(s) 471
Hpy188I TCNGA 2 cut(s) 178, 479
Hpy188III TCNNGA 2 cut(s) 134, 317
Hpy99I CGWCG 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 3 cut(s) 19, 202, 404
HpyF3I CTNAG 2 cut(s) 177, 360
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 2 cut(s) 46, 229
Hsp92II CATG 2 cut(s) 32, 404
HspAI GCGC 1 cut(s) 229
KasI GGCGCC 1 cut(s) 228
LguI GCTCTTC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 5 cut(s) 86, 147, 269, 330, 453
MaeII ACGT 1 cut(s) 213
MboII GAAGA 9 cut(s) 52, 63, 66, 235, 246, 249, 386, 401, 474
MluCI AATT 9 cut(s) 14, 167, 184, 197, 350, 405, 432, 437, 456
Mly113I GGCGCC 1 cut(s) 229
MlyI GAGTC 1 cut(s) 480
MnlI CCTC 4 cut(s) 105, 149, 288, 332
MseI TTAA 2 cut(s) 116, 299
MvnI CGCG 2 cut(s) 66, 249
NarI GGCGCC 1 cut(s) 229
NlaIII CATG 2 cut(s) 32, 404
NlaIV GGNNCC 1 cut(s) 230
NspI RCATGY 2 cut(s) 32, 404
PaeI GCATGC 1 cut(s) 404
PciI ACATGT 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 457
Pfl23II CGTACG 1 cut(s) 214
PleI GAGTC 1 cut(s) 479
PluTI GGCGCC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 479
Ppu21I YACGTR 1 cut(s) 214
PscI ACATGT 1 cut(s) 28
PspFI CCCAGC 2 cut(s) 100, 283
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 1 cut(s) 230
RsaI GTAC 2 cut(s) 33, 216
RsaNI GTAC 2 cut(s) 32, 215
SapI GCTCTTC 1 cut(s) 457
SaqAI TTAA 2 cut(s) 116, 299
SchI GAGTC 1 cut(s) 480
SetI ASST 8 cut(s) 116, 141, 216, 299, 305, 324, 428, 469
SfoI GGCGCC 1 cut(s) 230
SphI GCATGC 1 cut(s) 404
Sse9I AATT 9 cut(s) 14, 167, 184, 197, 350, 405, 432, 437, 456
SsiI CCGC 2 cut(s) 64, 247
SspDI GGCGCC 1 cut(s) 228
TaiI ACGT 1 cut(s) 216
TasI AATT 9 cut(s) 14, 167, 184, 197, 350, 405, 432, 437, 456
Tru1I TTAA 2 cut(s) 116, 299
Tru9I TTAA 2 cut(s) 116, 299
TscAI CASTG 1 cut(s) 364
TspDTI ATGAA 4 cut(s) 160, 229, 343, 431
TspRI CASTG 1 cut(s) 364
XapI RAATTY 2 cut(s) 167, 350
XceI RCATGY 2 cut(s) 32, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.