AT1G54385

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20301072 .. 20303949
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54385.3

Sequence Viewer

Length: 1683 bp
ATGGGTTTGAATCTGAATCCAATATTGAGACAAGAACTGGCTAATCTTGACAAAGACACAGAGAGTCGTAAATCAGCAATGAAAGCTCTTAAATCTTATGTGAAGGACTTGGATTCAAAGGCTATTCCTGGTTTTCTAGCTCAAGTTTTCGAGACTAAAGAAACCAACTCTTTGTCCGGTGAATACACGATTTCGCTTTATGAAATCCTTGCTCGTGTTCATGGACCTAACATTGTGCCTCAGATTGATACAATCATGTCCACTATTGTCAAGACTTTGGCTTCTAGTGCTGGTTCTTTCCCTCTTCAACAAGCGTGTTCGAAAGTTATTCCGGCGATTGCTCGATATGGGATCGATCCGACTACTACAGAAGACAAGAAACGAGTTATAATCCACTCTTTGTGTAAGCCTCTTACGGATTCTCTATTGGCCTCTCAAGAGAGCCTTACTTCAGGGGCTGCTTTGTGTTTGAAGGCTCTTGTGGATAGTGACAATTGGCGGTTTGCTTCGGATGAGATGGTGAACAGGGTTTGTCAAAATGTGGTAGTTGCGTTGGACTCAAACTCCAACCAAACACATCTTCAAATGGGTTTGGTTATGTCACTTGCCAAGCATAATCCTTTGATTGTTGAAGCTTATGCAAGGTTGCTGATACACACGGGGTTGCGAATTCTAGGATTTGGAGTATCTGAAGGAAACTCGCAGAAACGATTATCAGCAGTCCAAATGTTGAACTTCCTTATGAAGTGCTTGGATCCGAGAAGCATATACTCGGAAGTTGAGTTGATAATAAAAGAAATGGAGAGGTGTCAATCTGACCAAATGGCTTATGTTAGAGGAGCTGCTTATGAAGCAATGATGACTTCAAAAAGAATAGCGGCAGAGCTCGAGTCGAAGATGGAGAAAGGTTGTCGTTCTGTTACTGGTTCGAATTTCAGTCGAAGAAACTGTTCGTCCATTGTTCCTGATTACTCCTTATCACCTGAATCACAGACTCTAGGCTCTTTTAGCGGGTATGATTCTCCGGTTGAGTCCTCGCCTATTTCTCATACTTCTTGTAACTCTGAATTTGATCGGAGGAGTGTGAACCGCAAACTTTGGAGACGTGATGAGAATGGAGGAGTGGTTGATATCTCTTTAAAGGATGGTCTTTTCTCCCGTGTAACTAAAGGAAGCACCACTGTCTCTGATTCACCTCTTGTACCGTATGATACTTGTGAAAATGGAGATGAATTTGAAGGGTTTCTAATGGAAAGTTTGAGAAACACCACTCCTAGTCCTCAGAGACAGCGTTCACGTCGCATCAATGCTGAAGATTTCAACATCTTCAGCACTCCACGGAAGCTAATCAGCTCTCTTCAATATCCTGATGATGTTGATTTAGATCATTCAGACATCCAAAGTCCAATACTGAGAGGCGAGAGAGAGAAAACCATAGGATCTCGCAAGAATCCTAAACTCAGAAAGCAATTTCCAACCATGGTGGAAACAATGTCATCAACTATCACAGTTAGTGAAGACACAGCTCAAACACAGATGATAACCGGTAAGAAGAAGAAGAAGAAGATGAGCTATGCCAAACTCGTTATTGCGATATCTTTTGTTGTGGTGGCTCTCTTCGCAACTGTGATATTGATGGTGAATCAAGATGATGATGTTGGTTACTACACTGTCCCTACATGA

Protein Analysis

560

Amino Acids

62.15

Weight (kDa)

8.19

Isoelectric Point (pI)

48.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 17 - 288 9.6e-19 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AciI CCGC 4 cut(s) 499, 878, 1011, 1090
AclWI GGATC 5 cut(s) 350, 359, 749, 762, 1447
AcsI RAATTY 4 cut(s) 669, 931, 1067, 1232
AcuI CTGAAG 4 cut(s) 435, 711, 1312, 1332
AfaI GTAC 1 cut(s) 1203
AgeI ACCGGT 1 cut(s) 1544
AjiI CACGTC 2 cut(s) 1106, 1298
AjnI CCWGG 1 cut(s) 127
AjuI GAANNNNNNNTTGG 2 cut(s) 564, 596
AluBI AGCT 9 cut(s) 86, 140, 635, 842, 886, 1345, 1353, 1526, 1572
AluI AGCT 9 cut(s) 86, 140, 635, 842, 886, 1345, 1353, 1526, 1572
Alw21I GWGCWC 1 cut(s) 888
Alw26I GTCTC 5 cut(s) 22, 146, 1096, 1189, 1279
AlwI GGATC 5 cut(s) 350, 359, 749, 762, 1447
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 887
AoxI GGCC 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 458, 842
ApoI RAATTY 4 cut(s) 669, 931, 1067, 1232
AsiGI ACCGGT 1 cut(s) 1544
Asp700I GAANNNNTTC 2 cut(s) 949, 1242
AspS9I GGNCC 1 cut(s) 224
AsuHPI GGTGA 5 cut(s) 191, 532, 972, 1185, 1651
AsuII TTCGAA 2 cut(s) 320, 929
AvaI CYCGRG 1 cut(s) 887
AvaII GGWCC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 888
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 2 cut(s) 378, 1524
Bbv12I GWGCWC 1 cut(s) 888
BbvI GCAGC 2 cut(s) 445, 829
BccI CCATC 4 cut(s) 511, 892, 1139, 1630
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 5 cut(s) 22, 146, 1096, 1189, 1279
BfaI CTAG 5 cut(s) 137, 285, 674, 998, 1275
BfmI CTRYAG 1 cut(s) 366
BisI GCNGC 3 cut(s) 459, 843, 879
BlsI GCNGC 3 cut(s) 460, 844, 880
Bme1390I CCNGG 1 cut(s) 129
Bme18I GGWCC 1 cut(s) 224
BmeT110I CYCGRG 1 cut(s) 887
BmgBI CACGTC 2 cut(s) 1106, 1298
BmgT120I GGNCC 1 cut(s) 224
BmiI GGNNCC 1 cut(s) 756
BmrFI CCNGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 1311
BpiI GAAGAC 2 cut(s) 378, 1524
Bpu14I TTCGAA 2 cut(s) 320, 929
BpuEI CTTGAG 2 cut(s) 126, 420
Bsa29I ATCGAT 1 cut(s) 354
BsaBI GATNNNNATC 1 cut(s) 1383
BsaJI CCNNGG 2 cut(s) 1337, 1479
BsaWI WCCGGW 3 cut(s) 176, 1024, 1544
BsaXI ACNNNNNCTCC 4 cut(s) 548, 578, 1110, 1140
Bse118I RCCGGY 1 cut(s) 1544
Bse1I ACTGG 2 cut(s) 42, 928
Bse3DI GCAATG 2 cut(s) 84, 861
Bse8I GATNNNNATC 1 cut(s) 1383
BseBI CCWGG 1 cut(s) 129
BseCI ATCGAT 1 cut(s) 354
BseDI CCNNGG 2 cut(s) 1337, 1479
BseGI GGATG 3 cut(s) 517, 1150, 1395
BseJI GATNNNNATC 1 cut(s) 1383
BseMI GCAATG 2 cut(s) 84, 861
BseMII CTCAG 4 cut(s) 254, 1295, 1403, 1474
BseNI ACTGG 2 cut(s) 42, 928
BseRI GAGGAG 3 cut(s) 852, 1093, 1134
BseXI GCAGC 2 cut(s) 445, 829
BshFI GGCC 1 cut(s) 431
BshTI ACCGGT 1 cut(s) 1544
BshVI ATCGAT 1 cut(s) 354
BsiHKAI GWGCWC 1 cut(s) 888
BsiHKCI CYCGRG 1 cut(s) 887
BsiSI CCGG 4 cut(s) 177, 332, 1025, 1545
BslFI GGGAC 1 cut(s) 1658
BsmAI GTCTC 5 cut(s) 22, 146, 1096, 1189, 1279
BsmBI CGTCTC 1 cut(s) 1096
BsmFI GGGAC 1 cut(s) 1658
BsnI GGCC 1 cut(s) 431
BsoBI CYCGRG 1 cut(s) 887
Bsp119I TTCGAA 2 cut(s) 320, 929
Bsp1286I GDGCHC 1 cut(s) 888
Bsp143I GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
Bsp19I CCATGG 1 cut(s) 1479
BspACI CCGC 4 cut(s) 499, 878, 1011, 1090
BspANI GGCC 1 cut(s) 431
BspCNI CTCAG 4 cut(s) 253, 1294, 1404, 1473
BspDI ATCGAT 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 756
BspPI GGATC 5 cut(s) 350, 359, 749, 762, 1447
BspT104I TTCGAA 2 cut(s) 320, 929
BsrDI GCAATG 2 cut(s) 84, 861
BsrFI RCCGGY 1 cut(s) 1544
BsrI ACTGG 2 cut(s) 42, 928
BssAI RCCGGY 1 cut(s) 1544
BssECI CCNNGG 2 cut(s) 1337, 1479
BssMI GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 1479
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 6 cut(s) 950, 1183, 1206, 1510, 1627, 1672
Bst6I CTCTTC 3 cut(s) 309, 1362, 1622
BstBI TTCGAA 2 cut(s) 320, 929
BstDEI CTNAG 4 cut(s) 240, 1281, 1412, 1460
BstDSI CCRYGG 2 cut(s) 1337, 1479
BstF5I GGATG 3 cut(s) 517, 1150, 1395
BstKTI GATC 6 cut(s) 354, 358, 757, 1075, 1387, 1442
BstMAI GTCTC 5 cut(s) 22, 146, 1096, 1189, 1279
BstMBI GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
BstMWI GCNNNNNNNGC 5 cut(s) 83, 287, 851, 1008, 1619
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 445, 829
BstV2I GAAGAC 2 cut(s) 378, 1524
BstX2I RGATCY 2 cut(s) 754, 1439
BstYI RGATCY 2 cut(s) 754, 1439
Bsu15I ATCGAT 1 cut(s) 354
BsuRI GGCC 1 cut(s) 431
BsuTUI ATCGAT 1 cut(s) 354
BtgI CCRYGG 2 cut(s) 1337, 1479
BtrI CACGTC 2 cut(s) 1106, 1298
BtsCI GGATG 3 cut(s) 517, 1150, 1395
BtsIMutI CAGTG 2 cut(s) 1179, 1668
CaiI CAGNNNCTG 1 cut(s) 458
Cfr10I RCCGGY 1 cut(s) 1544
Cfr13I GGNCC 1 cut(s) 224
ClaI ATCGAT 1 cut(s) 354
Csp6I GTAC 1 cut(s) 1202
CspAI ACCGGT 1 cut(s) 1544
CspCI CAANNNNNGTGG 2 cut(s) 1464, 1499
CviAII CATG 4 cut(s) 221, 256, 1480, 1680
CviQI GTAC 1 cut(s) 1202
DdeI CTNAG 4 cut(s) 240, 1281, 1412, 1460
DpnI GATC 6 cut(s) 353, 357, 756, 1074, 1386, 1441
DpnII GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
DraI TTTAAA 1 cut(s) 1140
Eam1104I CTCTTC 3 cut(s) 309, 1362, 1622
EarI CTCTTC 3 cut(s) 309, 1362, 1622
Ecl136II GAGCTC 1 cut(s) 886
Eco130I CCWWGG 1 cut(s) 1479
Eco24I GRGCYC 1 cut(s) 888
Eco32I GATATC 2 cut(s) 1132, 1596
Eco47I GGWCC 1 cut(s) 224
Eco53kI GAGCTC 1 cut(s) 886
Eco57I CTGAAG 4 cut(s) 435, 711, 1312, 1332
Eco88I CYCGRG 1 cut(s) 887
EcoICRI GAGCTC 1 cut(s) 886
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 1 cut(s) 127
EcoRV GATATC 2 cut(s) 1132, 1596
EcoT14I CCWWGG 1 cut(s) 1479
EcoT38I GRGCYC 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 1479
Esp3I CGTCTC 1 cut(s) 1096
FaeI CATG 4 cut(s) 224, 259, 1483, 1683
FalI AAGNNNNNCTT 2 cut(s) 429, 461
FaqI GGGAC 1 cut(s) 1658
FatI CATG 4 cut(s) 220, 255, 1479, 1679
FauI CCCGC 1 cut(s) 1004
Fnu4HI GCNGC 3 cut(s) 459, 843, 879
FokI GGATG 3 cut(s) 524, 1157, 1382
FriOI GRGCYC 1 cut(s) 888
Fsp4HI GCNGC 3 cut(s) 459, 843, 879
FspBI CTAG 5 cut(s) 137, 285, 674, 998, 1275
GluI GCNGC 3 cut(s) 459, 843, 879
HaeIII GGCC 1 cut(s) 431
HapII CCGG 4 cut(s) 177, 332, 1025, 1545
Hin1II CATG 4 cut(s) 224, 259, 1483, 1683
HindIII AAGCTT 1 cut(s) 633
HpaII CCGG 4 cut(s) 177, 332, 1025, 1545
HphI GGTGA 5 cut(s) 191, 532, 972, 1185, 1651
Hpy166II GTNNAC 4 cut(s) 261, 523, 1087, 1295
Hpy188III TCNNGA 7 cut(s) 47, 151, 271, 437, 965, 1367, 1646
Hpy8I GTNNAC 4 cut(s) 261, 523, 1087, 1295
Hpy99I CGWCG 1 cut(s) 1302
HpyAV CCTTC 4 cut(s) 97, 466, 686, 1232
HpyCH4III ACNGT 6 cut(s) 950, 1183, 1206, 1510, 1627, 1672
HpyCH4IV ACGT 2 cut(s) 1105, 1297
HpyCH4V TGCA 1 cut(s) 641
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 287, 851, 1008, 1619
HpyF3I CTNAG 4 cut(s) 240, 1281, 1412, 1460
HpySE526I ACGT 2 cut(s) 1105, 1297
Hsp92II CATG 4 cut(s) 224, 259, 1483, 1683
Kzo9I GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
LmnI GCTCC 1 cut(s) 839
Lsp1109I GCAGC 2 cut(s) 445, 829
LweI GCATC 1 cut(s) 1311
MaeI CTAG 5 cut(s) 137, 285, 674, 998, 1275
MaeII ACGT 2 cut(s) 1105, 1297
MaeIII GTNAC 6 cut(s) 488, 600, 919, 1058, 1162, 1661
MalI GATC 6 cut(s) 353, 357, 756, 1074, 1386, 1441
MboI GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
MfeI CAATTG 1 cut(s) 493
MflI RGATCY 2 cut(s) 754, 1439
MhlI GDGCHC 1 cut(s) 888
MluCI AATT 6 cut(s) 493, 669, 931, 1067, 1232, 1469
MlyI GAGTC 5 cut(s) 73, 551, 899, 988, 1040
MmeI TCCRAC 4 cut(s) 383, 534, 591, 1499
MroXI GAANNNNTTC 2 cut(s) 949, 1242
MseI TTAA 2 cut(s) 90, 1139
MspI CCGG 4 cut(s) 177, 332, 1025, 1545
MspR9I CCNGG 1 cut(s) 129
MunI CAATTG 1 cut(s) 493
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 5 cut(s) 83, 287, 851, 1008, 1619
NcoI CCATGG 1 cut(s) 1479
NdeII GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
NlaIII CATG 4 cut(s) 224, 259, 1483, 1683
NlaIV GGNNCC 1 cut(s) 756
NmuCI GTSAC 2 cut(s) 488, 600
NspV TTCGAA 2 cut(s) 320, 929
PaeR7I CTCGAG 1 cut(s) 887
PdmI GAANNNNTTC 2 cut(s) 949, 1242
PfeI GAWTC 9 cut(s) 10, 16, 113, 419, 986, 1019, 1190, 1450, 1642
PinAI ACCGGT 1 cut(s) 1544
PkrI GCNGC 3 cut(s) 460, 844, 880
PleI GAGTC 5 cut(s) 72, 551, 898, 988, 1039
PpsI GAGTC 5 cut(s) 72, 551, 898, 988, 1039
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 888
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 756
PspPI GGNCC 1 cut(s) 224
PspXI VCTCGAGB 1 cut(s) 887
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 2 cut(s) 754, 1439
RsaI GTAC 1 cut(s) 1203
RsaNI GTAC 1 cut(s) 1202
SacI GAGCTC 1 cut(s) 888
SaqAI TTAA 2 cut(s) 90, 1139
SatI GCNGC 3 cut(s) 459, 843, 879
Sau3AI GATC 6 cut(s) 351, 355, 754, 1072, 1384, 1439
Sau96I GGNCC 1 cut(s) 224
SchI GAGTC 5 cut(s) 73, 551, 899, 988, 1040
ScrFI CCNGG 1 cut(s) 129
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 1 cut(s) 1311
SfcI CTRYAG 1 cut(s) 366
Sfr274I CTCGAG 1 cut(s) 887
SfuI TTCGAA 2 cut(s) 320, 929
SinI GGWCC 1 cut(s) 224
SlaI CTCGAG 1 cut(s) 887
SmlI CTYRAG 3 cut(s) 141, 435, 887
SmoI CTYRAG 3 cut(s) 141, 435, 887
Sse9I AATT 6 cut(s) 493, 669, 931, 1067, 1232, 1469
SsiI CCGC 4 cut(s) 499, 878, 1011, 1090
SspI AATATT 1 cut(s) 24
SspMI CTAG 5 cut(s) 137, 285, 674, 998, 1275
SstI GAGCTC 1 cut(s) 888
StyD4I CCNGG 1 cut(s) 127
StyI CCWWGG 1 cut(s) 1479
TaaI ACNGT 6 cut(s) 950, 1183, 1206, 1510, 1627, 1672
TaiI ACGT 2 cut(s) 1108, 1300
TaqI TCGA 8 cut(s) 150, 320, 343, 354, 888, 893, 929, 940
TasI AATT 6 cut(s) 493, 669, 931, 1067, 1232, 1469
TauI GCSGC 1 cut(s) 881
TfiI GAWTC 9 cut(s) 10, 16, 113, 419, 986, 1019, 1190, 1450, 1642
Tru1I TTAA 2 cut(s) 90, 1139
Tru9I TTAA 2 cut(s) 90, 1139
TscAI CASTG 2 cut(s) 1186, 1675
TseFI GTSAC 2 cut(s) 488, 600
TseI GCWGC 2 cut(s) 458, 842
Tsp45I GTSAC 2 cut(s) 488, 600
TspDTI ATGAA 6 cut(s) 95, 209, 216, 758, 864, 1245
TspGWI ACGGA 2 cut(s) 431, 1354
TspRI CASTG 2 cut(s) 1186, 1675
VpaK11BI GGWCC 1 cut(s) 224
XapI RAATTY 4 cut(s) 669, 931, 1067, 1232
XhoI CTCGAG 1 cut(s) 887
XmnI GAANNNNTTC 2 cut(s) 949, 1242
XspI CTAG 5 cut(s) 137, 285, 674, 998, 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.