Rroxscaffold_6G00388290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
1181461 .. 1183699
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388290.1

Sequence Viewer

Length: 1812 bp
ATGGGTAGAAATTTAGCCCCAGTACTACAGAGAGAATTGGAAAATCTTCACAAAGATGCTGATAGTCGTAGATCGGCAATGAAAGCACTGAAATCGTATGTGAAAGATTTGGACTCCAAGGCAATCCCTATGTTTCTTGCCCAAGTTTCCCAGTCCAAAGATTCTGGTCCTTTGAATGGGGAATGCACCATTTCGCTCTATGAAGTTCTTGCTCGTGTTCATGGTGTCAAAATCGTCCCTCTCATAAACAGCATCATGGCAACCATAATCAAGACACTAACGTCGAGTGCAGGGTCTTTCCCTCTTCAACAAGCATGCTCAAAGGTGGTTCCGGCCATTGCTAGATATGGGATTGACCCTACCACCCCTGAAGACAAGAAAAGGCATATCATTCATTCACTTTGCAATCCTCTCGCGGATTCCCTCTTGGGTTCTCAAGACAGCTTGACTTCTGGGGCTGCCCTTTGCTTAAAGGCTCTTGTGGATTCGGATAATTGGCGTTTTGCTTCAGATGAGATGGTTAATAAGGTTTGTCAGAATGTTTCTGGGGCTTTGGAGGAGAAATCTACTCAGTCGAATGCACATATGGGTCTGGTCATGTCTCTTGCAAAGCGTAATGCTATAATAGTTGAACCATATGCTAGGTTGTTGATACATGCTGGACTGCAGATATTGAACAATGGTTTAATAGAGGGGAATTCTCAGAAACGCTTGGAAGCTATTCAAATGGTGAACTTCTTGATGAAATGCTTAGATCCTTGGAGCATTTTATCCGAGCTTGACTTGGTTATTGAAGAAATGGACAAGAGTCAGTCAGATCAGATGGCTTATGTAGGAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGCTGCAGATAAAGGCCCAAAACTTGAAAAGGCTCATTCAGTCACTGGCTCAAACTTTAGTAGGAAGGACCATAGCAAGAGGCGAAATTTATCGAGTGCTGGTGATCAGTCCCCTGCATCAGTGTCACCTGAGTCACAGACCCTTGATTCCTTTATAGAATATGAATCATGGGTTGAATCACCTATTGCACTGGGGCAGGTTTCTCACAACTCAAATTATGATAGTAGGAGTGTCAACCGAAAACTTTGGAGTCATGAGCGTGGAGGAGTTGATGTGTCTCTCAAGGATGGTTTGTTCTCAGGAATTTCCTACTCTAATGCACATTCAGACTCTGGGAATAATCAGTTCATGAACAATGAAGGAGAGTGCACTGAAGAATTTTCAGGTTTCCTTCAAAGAAATCCTAGAAATGGAGTATCAAGAAGTGCCACAACCAGTCCCCTGAGGTCACGAACTCCAGTTGATGTTGATAATATCATCTTCAAAACTCCAAGGAGGCTTGTTCATTCTCTTCAGGATCCATATAATGTCAACACAGACTTCTCTGAGAAACAAACTAGAAGAGTTAGAAGTTTTTCCTTGAGCGAAGATTGCAGCCCAAATGTCAGGTACAATCAAAATGGTTATTCACATGGTGTGACTTATGACCACAATGGTAGCTTATATGACGGTGGTAGTGAGCAGTTCCAAGGTGGCCCTGAATCTGTATCCTCAACAGATGGTAGCCCTAAAGACGCTGATTTGCAAGCGTTTCATGATGTGGTTCCTGAAATAAAATCAGAAATTCAAGATTCTGGCATCAGAAAACCCCTTCGCAAGGCGGCTGTAAAATTGTTCTGTGGTCTCTCTTTTGCAGTACTTGCAGTAGCTGTTCCGTTTGCTTTGATTACTGATCAAGGTCAAGGTCATGAAGGTTATTATCTTGTTCCAACTTAG

Protein Analysis

603

Amino Acids

66.0

Weight (kDa)

6.37

Isoelectric Point (pI)

56.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 18 - 208 1.3e-16 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 1063
AccII CGCG 1 cut(s) 416
AciI CCGC 2 cut(s) 416, 1697
AclWI GGATC 3 cut(s) 749, 1388, 1401
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
AcuI CTGAAG 4 cut(s) 390, 492, 1269, 1373
AdeI CACNNNGTG 1 cut(s) 1511
AfaI GTAC 3 cut(s) 24, 1487, 1734
AfiI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
AluBI AGCT 7 cut(s) 444, 719, 778, 854, 878, 1536, 1745
AluI AGCT 7 cut(s) 444, 719, 778, 854, 878, 1536, 1745
Alw21I GWGCWC 1 cut(s) 1247
Alw26I GTCTC 3 cut(s) 606, 1158, 1724
Alw44I GTGCAC 1 cut(s) 1243
AlwI GGATC 3 cut(s) 749, 1388, 1401
AlwNI CAGNNNCTG 3 cut(s) 920, 1208, 1745
AoxI GGCC 3 cut(s) 333, 889, 1570
ApaLI GTGCAC 1 cut(s) 1243
ApeKI GCWGC 4 cut(s) 458, 842, 878, 1470
ApoI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
Asp700I GAANNNNTTC 3 cut(s) 45, 720, 1450
AspS9I GGNCC 4 cut(s) 167, 890, 943, 1571
AsuHPI GGTGA 4 cut(s) 742, 989, 993, 1047
AvaII GGWCC 2 cut(s) 167, 943
AxyI CCTNAGG 1 cut(s) 1319
BaeGI GKGCMC 1 cut(s) 1247
BamHI GGATCC 1 cut(s) 1393
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 378
Bbv12I GWGCWC 1 cut(s) 1247
BbvI GCAGC 4 cut(s) 445, 829, 865, 1482
BccI CCATC 4 cut(s) 511, 817, 1157, 1589
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 394, 428
BciVI GTATCC 1 cut(s) 1594
BclI TGATCA 2 cut(s) 979, 1768
BcoDI GTCTC 3 cut(s) 606, 1158, 1724
BfaI CTAG 4 cut(s) 342, 642, 1281, 1434
BfmI CTRYAG 3 cut(s) 26, 665, 879
BfuAI ACCTGC 1 cut(s) 1063
BfuI GTATCC 1 cut(s) 1594
BisI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
BlsI GCNGC 5 cut(s) 460, 844, 880, 1472, 1699
BmcAI AGTACT 2 cut(s) 24, 1734
Bme18I GGWCC 2 cut(s) 167, 943
BmgT120I GGNCC 4 cut(s) 167, 890, 943, 1571
BmiI GGNNCC 3 cut(s) 330, 1395, 1641
BmrI ACTGGG 3 cut(s) 14, 145, 1076
BmsI GCATC 4 cut(s) 46, 261, 1001, 1683
BmuI ACTGGG 3 cut(s) 14, 145, 1076
BoxI GACNNNNGTC 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 1317
BpuEI CTTGAG 3 cut(s) 420, 1142, 1477
BsaI GGTCTC 1 cut(s) 1724
BsaJI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
Bse1I ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
Bse21I CCTNAGG 1 cut(s) 1319
Bse3DI GCAATG 2 cut(s) 84, 336
BseDI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BseGI GGATG 1 cut(s) 1168
BseLI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
BseMI GCAATG 2 cut(s) 84, 336
BseMII CTCAG 6 cut(s) 584, 716, 996, 1188, 1310, 1413
BseNI ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
BseRI GAGGAG 2 cut(s) 572, 1155
BseSI GKGCMC 1 cut(s) 1247
BseXI GCAGC 4 cut(s) 445, 829, 865, 1482
BsgI GTGCAG 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 3 cut(s) 335, 891, 1572
BsiHKAI GWGCWC 1 cut(s) 1247
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 3 cut(s) 221, 970, 1299
BslI CCNNNNNNNGG 3 cut(s) 176, 1286, 1693
BsmAI GTCTC 3 cut(s) 606, 1158, 1724
BsmFI GGGAC 3 cut(s) 221, 970, 1299
BsmI GAATGC 2 cut(s) 188, 583
BsnI GGCC 3 cut(s) 335, 891, 1572
Bso31I GGTCTC 1 cut(s) 1724
Bsp1286I GDGCHC 1 cut(s) 1247
Bsp143I GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BspACI CCGC 2 cut(s) 416, 1697
BspANI GGCC 3 cut(s) 335, 891, 1572
BspCNI CTCAG 6 cut(s) 583, 715, 997, 1187, 1311, 1414
BspFNI CGCG 1 cut(s) 416
BspHI TCATGA 4 cut(s) 1129, 1224, 1630, 1783
BspLI GGNNCC 3 cut(s) 330, 1395, 1641
BspMAI CTGCAG 2 cut(s) 669, 883
BspMI ACCTGC 1 cut(s) 1063
BspPI GGATC 3 cut(s) 749, 1388, 1401
BspTNI GGTCTC 1 cut(s) 1724
BsrDI GCAATG 2 cut(s) 84, 336
BsrI ACTGG 6 cut(s) 20, 151, 925, 1071, 1311, 1334
BssECI CCNNGG 4 cut(s) 117, 758, 1367, 1564
BssMI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 4 cut(s) 117, 758, 1367, 1564
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 1547
Bst6I CTCTTC 3 cut(s) 309, 1392, 1432
BstAPI GCANNNNNTGC 1 cut(s) 1736
BstC8I GCNNGC 2 cut(s) 316, 1623
BstDEI CTNAG 8 cut(s) 570, 702, 751, 1005, 1174, 1319, 1422, 1809
BstENI CCTNNNNNAGG 1 cut(s) 1691
BstF5I GGATG 1 cut(s) 1168
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 6 cut(s) 74, 757, 820, 982, 1396, 1771
BstMAI GTCTC 3 cut(s) 606, 1158, 1724
BstMBI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
BstMWI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
BstNSI RCATGY 2 cut(s) 318, 659
BstPAI GACNNNNGTC 1 cut(s) 807
BstSFI CTRYAG 3 cut(s) 26, 665, 879
BstSLI GKGCMC 1 cut(s) 1247
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 4 cut(s) 445, 829, 865, 1482
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 754, 1393
BstYI RGATCY 2 cut(s) 754, 1393
Bsu36I CCTNAGG 1 cut(s) 1319
BsuI GTATCC 1 cut(s) 1594
BsuRI GGCC 3 cut(s) 335, 891, 1572
BtsCI GGATG 1 cut(s) 1168
BtsIMutI CAGTG 5 cut(s) 86, 918, 1002, 1064, 1245
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 2 cut(s) 316, 1623
CaiI CAGNNNCTG 3 cut(s) 920, 1208, 1745
CciI TCATGA 4 cut(s) 1129, 1224, 1630, 1783
Cfr13I GGNCC 4 cut(s) 167, 890, 943, 1571
CseI GACGC 1 cut(s) 1619
Csp6I GTAC 3 cut(s) 23, 1486, 1733
CviQI GTAC 3 cut(s) 23, 1486, 1733
DdeI CTNAG 8 cut(s) 570, 702, 751, 1005, 1174, 1319, 1422, 1809
DpnI GATC 6 cut(s) 73, 756, 819, 981, 1395, 1770
DpnII GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
DraIII CACNNNGTG 1 cut(s) 1511
DrdI GACNNNNNNGTC 1 cut(s) 280
DseDI GACNNNNNNGTC 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 309, 1392, 1432
EarI CTCTTC 3 cut(s) 309, 1392, 1432
Eco130I CCWWGG 4 cut(s) 117, 758, 1367, 1564
Eco31I GGTCTC 1 cut(s) 1724
Eco47I GGWCC 2 cut(s) 167, 943
Eco57I CTGAAG 4 cut(s) 390, 492, 1269, 1373
Eco81I CCTNAGG 1 cut(s) 1319
EcoNI CCTNNNNNAGG 1 cut(s) 1691
EcoRI GAATTC 1 cut(s) 697
EcoT14I CCWWGG 4 cut(s) 117, 758, 1367, 1564
ErhI CCWWGG 4 cut(s) 117, 758, 1367, 1564
FaqI GGGAC 3 cut(s) 221, 970, 1299
FauNDI CATATG 2 cut(s) 585, 637
FbaI TGATCA 2 cut(s) 979, 1768
Fnu4HI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
FokI GGATG 1 cut(s) 1175
Fsp4HI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
FspBI CTAG 4 cut(s) 342, 642, 1281, 1434
GluI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
GsuI CTGGAG 1 cut(s) 1317
HaeIII GGCC 3 cut(s) 335, 891, 1572
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 1619
HincII GTYRAC 2 cut(s) 1111, 1408
HindII GTYRAC 2 cut(s) 1111, 1408
HpaII CCGG 1 cut(s) 332
HphI GGTGA 4 cut(s) 742, 989, 993, 1047
Hpy166II GTNNAC 4 cut(s) 733, 1111, 1245, 1408
Hpy8I GTNNAC 4 cut(s) 733, 1111, 1245, 1408
Hpy99I CGWCG 1 cut(s) 286
HpyAV CCTTC 5 cut(s) 934, 1229, 1277, 1697, 1781
HpyCH4III ACNGT 1 cut(s) 1547
HpyCH4IV ACGT 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
HpyF3I CTNAG 8 cut(s) 570, 702, 751, 1005, 1174, 1319, 1422, 1809
HpySE526I ACGT 1 cut(s) 281
Ksp22I TGATCA 2 cut(s) 979, 1768
Kzo9I GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
LmnI GCTCC 1 cut(s) 762
Lsp1109I GCAGC 4 cut(s) 445, 829, 865, 1482
LweI GCATC 4 cut(s) 46, 261, 1001, 1683
MaeI CTAG 4 cut(s) 342, 642, 1281, 1434
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 5 cut(s) 916, 999, 1008, 1323, 1513
MalI GATC 6 cut(s) 73, 756, 819, 981, 1395, 1770
MboI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
MboII GAAGA 9 cut(s) 38, 296, 383, 806, 1262, 1348, 1379, 1449, 1475
MflI RGATCY 2 cut(s) 754, 1393
MhlI GDGCHC 1 cut(s) 1247
MlyI GAGTC 5 cut(s) 107, 817, 1016, 1135, 1199
MroXI GAANNNNTTC 3 cut(s) 45, 720, 1450
MseI TTAA 3 cut(s) 470, 522, 686
MslI CAYNNNNRTG 2 cut(s) 54, 1134
MspI CCGG 1 cut(s) 332
Mva1269I GAATGC 2 cut(s) 188, 583
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 4 cut(s) 83, 851, 1467, 1736
NdeI CATATG 2 cut(s) 585, 637
NdeII GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
NlaIV GGNNCC 3 cut(s) 330, 1395, 1641
NmuCI GTSAC 5 cut(s) 916, 999, 1008, 1323, 1513
NspI RCATGY 2 cut(s) 318, 659
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 4 cut(s) 1129, 1224, 1630, 1783
PctI GAATGC 2 cut(s) 188, 583
PdmI GAANNNNTTC 3 cut(s) 45, 720, 1450
PfeI GAWTC 8 cut(s) 161, 419, 485, 1022, 1040, 1052, 1577, 1667
PkrI GCNGC 5 cut(s) 460, 844, 880, 1472, 1699
PleI GAGTC 5 cut(s) 107, 816, 1015, 1134, 1199
PpsI GAGTC 5 cut(s) 107, 816, 1015, 1134, 1199
PshAI GACNNNNGTC 1 cut(s) 807
PspN4I GGNNCC 3 cut(s) 330, 1395, 1641
PspPI GGNCC 4 cut(s) 167, 890, 943, 1571
PstI CTGCAG 2 cut(s) 669, 883
PstNI CAGNNNCTG 3 cut(s) 920, 1208, 1745
PsuI RGATCY 2 cut(s) 754, 1393
RsaI GTAC 3 cut(s) 24, 1487, 1734
RsaNI GTAC 3 cut(s) 23, 1486, 1733
RseI CAYNNNNRTG 2 cut(s) 54, 1134
SaqAI TTAA 3 cut(s) 470, 522, 686
SatI GCNGC 5 cut(s) 459, 843, 879, 1471, 1698
Sau3AI GATC 6 cut(s) 71, 754, 817, 979, 1393, 1768
Sau96I GGNCC 4 cut(s) 167, 890, 943, 1571
ScaI AGTACT 2 cut(s) 24, 1734
SchI GAGTC 5 cut(s) 107, 817, 1016, 1135, 1199
SduI GDGCHC 1 cut(s) 1247
SfaNI GCATC 4 cut(s) 46, 261, 1001, 1683
SfcI CTRYAG 3 cut(s) 26, 665, 879
SinI GGWCC 2 cut(s) 167, 943
SmiMI CAYNNNNRTG 2 cut(s) 54, 1134
SmlI CTYRAG 3 cut(s) 435, 1157, 1456
SmoI CTYRAG 3 cut(s) 435, 1157, 1456
SphI GCATGC 1 cut(s) 318
SsiI CCGC 2 cut(s) 416, 1697
SspMI CTAG 4 cut(s) 342, 642, 1281, 1434
StyI CCWWGG 4 cut(s) 117, 758, 1367, 1564
TaaI ACNGT 1 cut(s) 1547
TaiI ACGT 1 cut(s) 284
TaqI TCGA 3 cut(s) 284, 575, 968
TatI WGTACW 2 cut(s) 22, 1732
TauI GCSGC 1 cut(s) 1700
TfiI GAWTC 8 cut(s) 161, 419, 485, 1022, 1040, 1052, 1577, 1667
Tru1I TTAA 3 cut(s) 470, 522, 686
Tru9I TTAA 3 cut(s) 470, 522, 686
TscAI CASTG 5 cut(s) 93, 925, 1002, 1071, 1252
TseFI GTSAC 5 cut(s) 916, 999, 1008, 1323, 1513
TseI GCWGC 4 cut(s) 458, 842, 878, 1470
Tsp45I GTSAC 5 cut(s) 916, 999, 1008, 1323, 1513
TspGWI ACGGA 1 cut(s) 1740
TspRI CASTG 5 cut(s) 93, 925, 1002, 1071, 1252
VneI GTGCAC 1 cut(s) 1243
VpaK11BI GGWCC 2 cut(s) 167, 943
XagI CCTNNNNNAGG 1 cut(s) 1691
XapI RAATTY 6 cut(s) 10, 697, 961, 1179, 1253, 1659
XceI RCATGY 2 cut(s) 318, 659
XmnI GAANNNNTTC 3 cut(s) 45, 720, 1450
XspI CTAG 4 cut(s) 342, 642, 1281, 1434
ZrmI AGTACT 2 cut(s) 24, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.