Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Reverse (-)

472314 .. 472916

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1003000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGTACAAGTTTAAGCCCGATACTGCGGCGTGAGTTGGAAAATCTGGATAAAGATGCTGACAGTCGTAGATCAGCAATGAAAGTGTTGAAATCTAATGTAAAGGATTTGGATTCCACTGCAATTCTCATGTTTCTTGCTCAAGTTTCTCAGACTAAAGAAACTGGTTCTTTGTCTGAAGAATGCACTATTTCGCTGTACGAAGTTCTTGCACGTGTTCACAGTGTTAAAATAATCCATCTGATAAATAGCATCATGACCACTATAATGAAGACCTTGGTCCTTGGCTTCGAGTGCATGGTCTTTCCCTCTTCAACAGGCATGCTCATGGTTGTCCCATCTATTGTTCTATATGGGATTGACCCAACCACCCCTGAAGACAAGAAGAGGCACATTATTCATTCACTTTGCACTCCTCTCTCGGATTCTCTCTTGGACTCTCAAGAGAGCTTCACTTCTGAAGCTGCCCTTTTCTTAAGATGGCCCTTGTTGATTCAGATAATTGGCGATTTTCTTCAGATGAGATGGTCAATAGGGTCTGTCAGAACGTTTCTGGAGCTTTGGAGGAGAAGTCTACTCAGATGGTCAATAGGGTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

22.57

Weight (kDa)

6.9

Isoelectric Point (pI)

69.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	574
AciI	CCGC	1 cut(s)	28
AclI	AACGTT	1 cut(s)	548
AcuI	CTGAAG	4 cut(s)	198, 396, 480, 500
AcvI	CACGTG	1 cut(s)	215
AfaI	GTAC	2 cut(s)	7, 200
AflII	CTTAAG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	2 cut(s)	91, 315
AluBI	AGCT	3 cut(s)	450, 464, 559
AluI	AGCT	3 cut(s)	450, 464, 559
AoxI	GGCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	464
AspS9I	GGNCC	2 cut(s)	280, 483
AvaII	GGWCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	278, 384
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	5 cut(s)	246, 346, 474, 519, 576
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BfrI	CTTAAG	1 cut(s)	475
BisI	GCNGC	2 cut(s)	29, 465
BlsI	GCNGC	2 cut(s)	30, 466
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	2 cut(s)	280, 483
BmsI	GCATC	2 cut(s)	46, 261
BoxI	GACNNNNGTC	1 cut(s)	278
BpiI	GAAGAC	2 cut(s)	278, 384
BpmI	CTGGAG	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	126, 426
BsaAI	YACGTR	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	276, 283
BsaXI	ACNNNNNCTCC	2 cut(s)	556, 586
Bse1I	ACTGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	84
BseDI	CCNNGG	2 cut(s)	276, 283
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	164, 592
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	2 cut(s)	405, 580
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	484
BslFI	GGGAC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	484
Bsp143I	GATC	1 cut(s)	71
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	484
BspCNI	CTCAG	2 cut(s)	163, 591
BspHI	TCATGA	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	475
BsrDI	GCAATG	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	276, 283
BssMI	GATC	1 cut(s)	71
BssT1I	CCWWGG	2 cut(s)	276, 283
Bst4CI	ACNGT	2 cut(s)	65, 224
Bst6I	CTCTTC	2 cut(s)	316, 380
BstAFI	CTTAAG	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	323
BstDEI	CTNAG	2 cut(s)	150, 578
BstKTI	GATC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	71
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	1 cut(s)	325
BstPAI	GACNNNNGTC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	451
BstV2I	GAAGAC	2 cut(s)	278, 384
BsuRI	GGCC	1 cut(s)	484
BtsI	GCAGTG	1 cut(s)	117
BtsIMutI	CAGTG	2 cut(s)	117, 229
Cac8I	GCNNGC	1 cut(s)	323
CciI	TCATGA	1 cut(s)	255
Cfr13I	GGNCC	2 cut(s)	280, 483
Csp6I	GTAC	2 cut(s)	6, 199
CviAII	CATG	5 cut(s)	130, 256, 298, 322, 328
CviJI	RGCY	6 cut(s)	18, 288, 450, 464, 484, 559
CviKI_1	RGCY	6 cut(s)	18, 288, 450, 464, 484, 559
CviQI	GTAC	2 cut(s)	6, 199
DdeI	CTNAG	2 cut(s)	150, 578
DpnI	GATC	1 cut(s)	73
DpnII	GATC	1 cut(s)	71
Eam1104I	CTCTTC	2 cut(s)	316, 380
EarI	CTCTTC	2 cut(s)	316, 380
Eco130I	CCWWGG	2 cut(s)	276, 283
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	4 cut(s)	198, 396, 480, 500
Eco72I	CACGTG	1 cut(s)	215
EcoT14I	CCWWGG	2 cut(s)	276, 283
ErhI	CCWWGG	2 cut(s)	276, 283
FaeI	CATG	5 cut(s)	133, 259, 301, 325, 331
FaiI	YATR	8 cut(s)	131, 257, 266, 299, 323, 329, 352, 354
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	5 cut(s)	129, 255, 297, 321, 327
FblI	GTMKAC	1 cut(s)	574
Fnu4HI	GCNGC	2 cut(s)	29, 465
Fsp4HI	GCNGC	2 cut(s)	29, 465
GluI	GCNGC	2 cut(s)	29, 465
GsuI	CTGGAG	1 cut(s)	575
HaeIII	GGCC	1 cut(s)	484
Hin1II	CATG	5 cut(s)	133, 259, 301, 325, 331
HinfI	GANTC	4 cut(s)	113, 425, 437, 493
Hpy166II	GTNNAC	2 cut(s)	220, 575
Hpy188I	TCNGA	9 cut(s)	153, 178, 243, 424, 460, 498, 519, 545, 581
Hpy188III	TCNNGA	4 cut(s)	47, 256, 443, 554
Hpy8I	GTNNAC	2 cut(s)	220, 575
HpyCH4III	ACNGT	2 cut(s)	65, 224
HpyCH4IV	ACGT	2 cut(s)	214, 548
HpyCH4V	TGCA	5 cut(s)	122, 186, 212, 297, 411
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	150, 578
HpySE526I	ACGT	2 cut(s)	214, 548
Hsp92II	CATG	5 cut(s)	133, 259, 301, 325, 331
Kzo9I	GATC	1 cut(s)	71
LmnI	GCTCC	1 cut(s)	556
LpnPI	CCDG	5 cut(s)	32, 150, 303, 387, 539
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	2 cut(s)	46, 261
MaeII	ACGT	2 cut(s)	214, 548
MalI	GATC	1 cut(s)	73
MboI	GATC	1 cut(s)	71
MboII	GAAGA	6 cut(s)	191, 283, 303, 389, 397, 506
MluCI	AATT	2 cut(s)	123, 501
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	4 cut(s)	319, 381, 426, 558
MseI	TTAA	3 cut(s)	14, 228, 476
MslI	CAYNNNNRTG	2 cut(s)	266, 326
MspCI	CTTAAG	1 cut(s)	475
Mva1269I	GAATGC	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	71
NlaIII	CATG	5 cut(s)	133, 259, 301, 325, 331
NspI	RCATGY	1 cut(s)	325
PaeI	GCATGC	1 cut(s)	325
PagI	TCATGA	1 cut(s)	255
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	113, 425, 493
PkrI	GCNGC	2 cut(s)	30, 466
PleI	GAGTC	1 cut(s)	431
PmaCI	CACGTG	1 cut(s)	215
PmlI	CACGTG	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	431
Ppu21I	YACGTR	1 cut(s)	215
PshAI	GACNNNNGTC	1 cut(s)	278
Psp1406I	AACGTT	1 cut(s)	548
PspCI	CACGTG	1 cut(s)	215
PspPI	GGNCC	2 cut(s)	280, 483
RsaI	GTAC	2 cut(s)	7, 200
RsaNI	GTAC	2 cut(s)	6, 199
RseI	CAYNNNNRTG	2 cut(s)	266, 326
SaqAI	TTAA	3 cut(s)	14, 228, 476
SatI	GCNGC	2 cut(s)	29, 465
Sau3AI	GATC	1 cut(s)	71
Sau96I	GGNCC	2 cut(s)	280, 483
SchI	GAGTC	1 cut(s)	431
SetI	ASST	6 cut(s)	217, 278, 452, 466, 551, 561
SfaNI	GCATC	2 cut(s)	46, 261
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	2 cut(s)	266, 326
SmlI	CTYRAG	3 cut(s)	141, 441, 475
SmoI	CTYRAG	3 cut(s)	141, 441, 475
SphI	GCATGC	1 cut(s)	325
Sse9I	AATT	2 cut(s)	123, 501
SsiI	CCGC	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	276, 283
TaaI	ACNGT	2 cut(s)	65, 224
TaiI	ACGT	2 cut(s)	217, 551
TaqI	TCGA	1 cut(s)	291
TasI	AATT	2 cut(s)	123, 501
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	3 cut(s)	113, 425, 493
Tru1I	TTAA	3 cut(s)	14, 228, 476
Tru9I	TTAA	3 cut(s)	14, 228, 476
TscAI	CASTG	2 cut(s)	124, 229
TseI	GCWGC	1 cut(s)	464
TspDTI	ATGAA	3 cut(s)	95, 284, 389
TspRI	CASTG	2 cut(s)	124, 229
Vha464I	CTTAAG	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.