Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Reverse (-)

450476 .. 452230

Gene Structure 1755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1002900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTCATTTATACATCGCGTATAGCTATTTATGGTCGTAAAATATTTGCAGGTGTTGATCTATTTCTTGTGGAGGCTAGATTTACTGGGTCTTTCCCTCTTCAACAGGCATGCTCAAAGGTTGTCCGAGCTATTGCTCTATATGGGATTGACCCAACCAACCCTGAAGACAGGAAGAGGCACATTATTCATTCACTTTGCACTCCTCTTTCGGATTCCCTCTTGGATTCTCAAGAGAGCTTCACTTCTGGAGCTGCCCTTTGCTTAAGAGGGCCCTTGGTCTGTCAGAATGTTTCTGGAGCTTTGGAGGAGAAGTCCACTCAGACAAATGCACACATGGGTCTGGACCGTGTGGTCATGTCCCTTGCGAAGCATAATGCAGTAATTGTTGAACCATATGCTATGTTGAGGATTCAAGCTGGAATCCGGATATTGGATACTGGTGTAGAGGAGGGGAATTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

16.78

Weight (kDa)

6.89

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	41
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc36I	ACCTGC	1 cut(s)	41
AccII	CGCG	1 cut(s)	19
AccIII	TCCGGA	1 cut(s)	426
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	186
AfiI	CCNNNNNNNGG	1 cut(s)	433
AflII	CTTAAG	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	104, 392, 416
AluBI	AGCT	6 cut(s)	26, 131, 240, 254, 302, 419
AluI	AGCT	6 cut(s)	26, 131, 240, 254, 302, 419
Aor13HI	TCCGGA	1 cut(s)	426
AoxI	GGCC	1 cut(s)	272
ApaI	GGGCCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	254
ApoI	RAATTY	1 cut(s)	457
AspS9I	GGNCC	3 cut(s)	272, 273, 346
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	276
BaeI	ACNNNNGTAYC	2 cut(s)	429, 462
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	241
BciVI	GTATCC	1 cut(s)	430
BfaI	CTAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	265
BfuAI	ACCTGC	1 cut(s)	41
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	3 cut(s)	272, 273, 346
BmiI	GGNNCC	1 cut(s)	274
BmrI	ACTGGG	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	174
BpmI	CTGGAG	2 cut(s)	270, 318
BpuEI	CTTGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse1I	ACTGG	2 cut(s)	91, 445
BseAI	TCCGGA	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	91, 445
BseRI	GAGGAG	3 cut(s)	195, 323, 464
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	241
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	427
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	433
BsmFI	GGGAC	1 cut(s)	346
BsnI	GGCC	1 cut(s)	274
Bsp120I	GGGCCC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	1 cut(s)	58
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	334
BspEI	TCCGGA	1 cut(s)	426
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	41
BspTI	CTTAAG	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	91, 445
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	350
Bst6I	CTCTTC	2 cut(s)	105, 170
BstAFI	CTTAAG	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	2 cut(s)	321, 462
BstFNI	CGCG	1 cut(s)	19
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	276
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	274
BveI	ACCTGC	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	112
Cfr13I	GGNCC	3 cut(s)	272, 273, 346
CviAII	CATG	3 cut(s)	111, 337, 358
CviJI	RGCY	8 cut(s)	26, 77, 131, 240, 254, 274, 302, 419
CviKI_1	RGCY	8 cut(s)	26, 77, 131, 240, 254, 274, 302, 419
DdeI	CTNAG	2 cut(s)	321, 462
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eam1104I	CTCTTC	2 cut(s)	105, 170
EarI	CTCTTC	2 cut(s)	105, 170
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	2 cut(s)	272, 273
EcoRI	GAATTC	1 cut(s)	457
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	114, 340, 361
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	3 cut(s)	110, 336, 357
FauNDI	CATATG	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	276
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	2 cut(s)	270, 318
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	427
Hin1II	CATG	3 cut(s)	114, 340, 361
HinfI	GANTC	4 cut(s)	215, 227, 412, 423
HpaII	CCGG	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	4 cut(s)	128, 214, 288, 324
Hpy188III	TCNNGA	5 cut(s)	233, 249, 297, 344, 427
Hpy8I	GTNNAC	1 cut(s)	318
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	4 cut(s)	50, 201, 332, 380
HpyF3I	CTNAG	2 cut(s)	321, 462
Hsp92II	CATG	3 cut(s)	114, 340, 361
Kpn2I	TCCGGA	1 cut(s)	426
Kzo9I	GATC	1 cut(s)	58
LmnI	GCTCC	2 cut(s)	251, 299
Lsp1109I	GCAGC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	78
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	92, 179, 187
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	2 cut(s)	384, 457
MroI	TCCGGA	1 cut(s)	426
MseI	TTAA	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	265
MspI	CCGG	1 cut(s)	427
MvnI	CGCG	1 cut(s)	19
NdeI	CATATG	1 cut(s)	397
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	114, 340, 361
NlaIV	GGNNCC	1 cut(s)	274
NspI	RCATGY	1 cut(s)	114
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	215, 227, 412, 423
PkrI	GCNGC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	274
PspOMI	GGGCCC	1 cut(s)	272
PspPI	GGNCC	3 cut(s)	272, 273, 346
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	3 cut(s)	272, 273, 346
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	8 cut(s)	28, 55, 123, 133, 242, 256, 304, 421
SinI	GGWCC	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	231, 265
SmoI	CTYRAG	2 cut(s)	231, 265
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	2 cut(s)	384, 457
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	1 cut(s)	78
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	350
TasI	AATT	2 cut(s)	384, 457
TfiI	GAWTC	4 cut(s)	215, 227, 412, 423
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	179
Vha464I	CTTAAG	1 cut(s)	265
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	114
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.