Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Reverse (-)

46863147 .. 46866191

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG370000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGGTAGAAATTTAGCCCCAGTACTACAGAGAGAATTGGAAAATCTTCATAAAGATGCTGATAGTCGTAGATCGGCAATGAAAGCACTGAAATCCTATGTGAAAGATTTGGACTCCAAGGCAATCCCTATGTTTCTTGCCCAAGTTTCCCAGTCCAAAGACTCTGGTCCTTTGAATGGGGAATGCACCATTTCTCTCTATGAAGTTCTTGCTCGTGTTCATGGTGTCAAAATCGTCCCTCTCATAAACAGCATCATGGCAACCATAATCAAGACACTAACTTCGAGTGCAGGGTCTTTCCCTCTTCAACAAGCATGCTCAAAGGTGGTTCCGGCCATTGCTAGATATGGGATCGACCCTACCACCCCTGAAGACAAGAAAAGGCATATCATTCATTCACTTTGCAATCCTCTCGCGGATTCCCTCTTGGGTTCTCAAGACAGCTTGACTTCTGGAGCTGCCCTTTGCTTAAAGGCTCTTGTGGATTCGGAAAATTGGCGTTTTGCTTCAGATGAGATGGTTAATAAGGTTTGTCAGAATGTTTCTGGGGCTTTGGAGGAGAAATCTACTCAGTCGAATGCACATATGGGTCTGGTCATGTCTCTTGCAAAGCGTAATGCTATAATAGTTGAACCATACGCTAGGTTGTTGATACATGCTGGACTGCAGATACTGAACAATGGTTTAATAGAGGGGAATTCTCAAAAACGCTTGGAAGCTATTCAAATGGTGAACTTCTTGATGAAATGCTTAGATCCTTGGAGCATTTTATCCGAGCTTGACTTGGTTATTGAAGAAATGGACAAGAGTCAGTCAGATCAGATGGCTTATGTAGGAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGCTGCAGATAAAGGCCCAAAACTTGAAAAGGCTCATTCAGTCACTGGCTCAAACTTTAGTAGGAAGGACCATAGCAAGAGGCGAAATTTATCTAGTGCTGGCGATCAGTCCCCTGCATCAGTGTCACCTGAGTCACAGACCCTTGATTCCTTTATAGAATATGAATCATGGGTTGAATCACCTATTGCACTGGGGCAGGTTTCTCACAACTCGAATTATGATAGTAGGAGTGTCAACCGGAAACTTTGGAGTCATGAGCGTGGAGGAGTTGATGTGTCTCTCAAGGATGGTTTGTTCTCAGGAATTTCCTACTCTAATGCACATTCAGACTCTGGGAATAATCAGTTCATGAACAACGAAGGAGAGTGCACAGAAGAATTTTCAGGTTTCCTTCAAAGAAATCCTAGAAATGGAGTATCAAGAAGTGCCACAACCAGTCCCCTGGTAAGTTGCTCCAGTAGAATTGAATCTGTTTCTAAATTTTTAATTCATTTTATATTTTATTTTAATTTTAAAGATTCATTCAATGGGTTGATTGAGATGGGGCTACTGGTTGTATCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

480

Amino Acids

52.58

Weight (kDa)

6.65

Isoelectric Point (pI)

56.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	18 - 209	5.9e-17	TORTIFOLIA1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1063
AccII	CGCG	1 cut(s)	416
AciI	CCGC	1 cut(s)	416
AclWI	GGATC	2 cut(s)	359, 749
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	6 cut(s)	10, 697, 961, 1179, 1253, 1355
AcuI	CTGAAG	2 cut(s)	390, 492
AfaI	GTAC	1 cut(s)	24
AfiI	CCNNNNNNNGG	2 cut(s)	176, 1286
AjnI	CCWGG	1 cut(s)	1317
AloI	GAACNNNNNNTCC	2 cut(s)	1154, 1186
AluBI	AGCT	6 cut(s)	444, 458, 719, 778, 854, 878
AluI	AGCT	6 cut(s)	444, 458, 719, 778, 854, 878
Alw21I	GWGCWC	1 cut(s)	1247
Alw26I	GTCTC	2 cut(s)	606, 1158
Alw44I	GTGCAC	1 cut(s)	1243
AlwI	GGATC	2 cut(s)	359, 749
AlwNI	CAGNNNCTG	3 cut(s)	673, 920, 1208
AoxI	GGCC	2 cut(s)	333, 889
ApaLI	GTGCAC	1 cut(s)	1243
ApeKI	GCWGC	3 cut(s)	458, 842, 878
ApoI	RAATTY	6 cut(s)	10, 697, 961, 1179, 1253, 1355
ArsI	GACNNNNNNTTYG	2 cut(s)	265, 297
Asp700I	GAANNNNTTC	2 cut(s)	45, 720
AspS9I	GGNCC	3 cut(s)	167, 890, 943
AsuHPI	GGTGA	3 cut(s)	742, 993, 1047
AvaII	GGWCC	2 cut(s)	167, 943
BaeGI	GKGCMC	1 cut(s)	1247
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	1247
BbvI	GCAGC	3 cut(s)	445, 829, 865
BccI	CCATC	4 cut(s)	511, 817, 1157, 1411
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciT130I	CCWGG	1 cut(s)	1319
BcoDI	GTCTC	2 cut(s)	606, 1158
BfaI	CTAG	5 cut(s)	342, 642, 969, 1281, 1441
BfmI	CTRYAG	3 cut(s)	26, 665, 879
BfuAI	ACCTGC	1 cut(s)	1063
BisI	GCNGC	3 cut(s)	459, 843, 879
BlsI	GCNGC	3 cut(s)	460, 844, 880
BmcAI	AGTACT	1 cut(s)	24
Bme1390I	CCNGG	1 cut(s)	1319
Bme18I	GGWCC	2 cut(s)	167, 943
BmgT120I	GGNCC	3 cut(s)	167, 890, 943
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	1319
BmrI	ACTGGG	3 cut(s)	14, 145, 1076
BmsI	GCATC	3 cut(s)	46, 261, 1001
BmuI	ACTGGG	3 cut(s)	14, 145, 1076
BoxI	GACNNNNGTC	2 cut(s)	165, 807
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	2 cut(s)	474, 1315
BpuEI	CTTGAG	2 cut(s)	420, 1142
BsaJI	CCNNGG	3 cut(s)	117, 758, 1317
BsaWI	WCCGGW	1 cut(s)	1113
BsaXI	ACNNNNNCTCC	2 cut(s)	1134, 1164
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 1286
Bse1I	ACTGG	7 cut(s)	20, 151, 925, 1071, 1311, 1332, 1431
Bse3DI	GCAATG	2 cut(s)	84, 336
BseBI	CCWGG	1 cut(s)	1319
BseDI	CCNNGG	3 cut(s)	117, 758, 1317
BseGI	GGATG	1 cut(s)	1168
BseLI	CCNNNNNNNGG	2 cut(s)	176, 1286
BseMI	GCAATG	2 cut(s)	84, 336
BseMII	CTCAG	3 cut(s)	584, 996, 1188
BseNI	ACTGG	7 cut(s)	20, 151, 925, 1071, 1311, 1332, 1431
BseRI	GAGGAG	2 cut(s)	572, 1155
BseSI	GKGCMC	1 cut(s)	1247
BseXI	GCAGC	3 cut(s)	445, 829, 865
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	2 cut(s)	335, 891
BsiHKAI	GWGCWC	1 cut(s)	1247
BsiSI	CCGG	2 cut(s)	332, 1114
BslFI	GGGAC	3 cut(s)	221, 970, 1299
BslI	CCNNNNNNNGG	2 cut(s)	176, 1286
BsmAI	GTCTC	2 cut(s)	606, 1158
BsmFI	GGGAC	3 cut(s)	221, 970, 1299
BsmI	GAATGC	2 cut(s)	188, 583
BsnI	GGCC	2 cut(s)	335, 891
Bsp1286I	GDGCHC	1 cut(s)	1247
Bsp143I	GATC	5 cut(s)	71, 351, 754, 817, 979
BspACI	CCGC	1 cut(s)	416
BspANI	GGCC	2 cut(s)	335, 891
BspCNI	CTCAG	3 cut(s)	583, 997, 1187
BspFNI	CGCG	1 cut(s)	416
BspHI	TCATGA	2 cut(s)	1129, 1224
BspLI	GGNNCC	1 cut(s)	330
BspMAI	CTGCAG	2 cut(s)	669, 883
BspMI	ACCTGC	1 cut(s)	1063
BspPI	GGATC	2 cut(s)	359, 749
BsrDI	GCAATG	2 cut(s)	84, 336
BsrI	ACTGG	7 cut(s)	20, 151, 925, 1071, 1311, 1332, 1431
BssECI	CCNNGG	3 cut(s)	117, 758, 1317
BssMI	GATC	5 cut(s)	71, 351, 754, 817, 979
BssSI	CACGAG	1 cut(s)	213
BssT1I	CCWWGG	2 cut(s)	117, 758
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	1319
Bst6I	CTCTTC	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	316, 976
BstDEI	CTNAG	4 cut(s)	570, 751, 1005, 1174
BstF5I	GGATG	1 cut(s)	1168
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	5 cut(s)	74, 354, 757, 820, 982
BstMAI	GTCTC	2 cut(s)	606, 1158
BstMBI	GATC	5 cut(s)	71, 351, 754, 817, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 851
BstNI	CCWGG	1 cut(s)	1319
BstNSI	RCATGY	2 cut(s)	318, 659
BstPAI	GACNNNNGTC	2 cut(s)	165, 807
BstSCI	CCNGG	1 cut(s)	1317
BstSFI	CTRYAG	3 cut(s)	26, 665, 879
BstSLI	GKGCMC	1 cut(s)	1247
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	445, 829, 865
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	754
BstXI	CCANNNNNNTGG	1 cut(s)	1318
BstYI	RGATCY	1 cut(s)	754
BsuRI	GGCC	2 cut(s)	335, 891
BtsCI	GGATG	1 cut(s)	1168
BtsIMutI	CAGTG	4 cut(s)	86, 918, 1002, 1064
BveI	ACCTGC	1 cut(s)	1063
Cac8I	GCNNGC	2 cut(s)	316, 976
CaiI	CAGNNNCTG	3 cut(s)	673, 920, 1208
CciI	TCATGA	2 cut(s)	1129, 1224
Cfr13I	GGNCC	3 cut(s)	167, 890, 943
Csp6I	GTAC	1 cut(s)	23
CviAII	CATG	8 cut(s)	221, 256, 315, 598, 656, 1044, 1130, 1225
CviQI	GTAC	1 cut(s)	23
DdeI	CTNAG	4 cut(s)	570, 751, 1005, 1174
DpnI	GATC	5 cut(s)	73, 353, 756, 819, 981
DpnII	GATC	5 cut(s)	71, 351, 754, 817, 979
DraI	TTTAAA	1 cut(s)	1390
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	2 cut(s)	117, 758
Eco47I	GGWCC	2 cut(s)	167, 943
Eco57I	CTGAAG	2 cut(s)	390, 492
EcoRI	GAATTC	1 cut(s)	697
EcoRII	CCWGG	1 cut(s)	1317
EcoT14I	CCWWGG	2 cut(s)	117, 758
ErhI	CCWWGG	2 cut(s)	117, 758
FaeI	CATG	8 cut(s)	224, 259, 318, 601, 659, 1047, 1133, 1228
FaqI	GGGAC	3 cut(s)	221, 970, 1299
FatI	CATG	8 cut(s)	220, 255, 314, 597, 655, 1043, 1129, 1224
FauNDI	CATATG	1 cut(s)	585
Fnu4HI	GCNGC	3 cut(s)	459, 843, 879
FokI	GGATG	1 cut(s)	1175
Fsp4HI	GCNGC	3 cut(s)	459, 843, 879
FspBI	CTAG	5 cut(s)	342, 642, 969, 1281, 1441
GluI	GCNGC	3 cut(s)	459, 843, 879
GsuI	CTGGAG	2 cut(s)	474, 1315
HaeIII	GGCC	2 cut(s)	335, 891
HapII	CCGG	2 cut(s)	332, 1114
Hin1II	CATG	8 cut(s)	224, 259, 318, 601, 659, 1047, 1133, 1228
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HpaII	CCGG	2 cut(s)	332, 1114
HphI	GGTGA	3 cut(s)	742, 993, 1047
Hpy166II	GTNNAC	3 cut(s)	733, 1111, 1245
Hpy188I	TCNGA	7 cut(s)	490, 511, 537, 775, 817, 822, 1204
Hpy188III	TCNNGA	8 cut(s)	271, 437, 453, 739, 1130, 1176, 1225, 1296
Hpy8I	GTNNAC	3 cut(s)	733, 1111, 1245
HpyAV	CCTTC	3 cut(s)	934, 1229, 1277
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 851
HpyF3I	CTNAG	4 cut(s)	570, 751, 1005, 1174
Hsp92II	CATG	8 cut(s)	224, 259, 318, 601, 659, 1047, 1133, 1228
Kzo9I	GATC	5 cut(s)	71, 351, 754, 817, 979
LmnI	GCTCC	3 cut(s)	455, 762, 1334
Lsp1109I	GCAGC	3 cut(s)	445, 829, 865
LweI	GCATC	3 cut(s)	46, 261, 1001
MaeI	CTAG	5 cut(s)	342, 642, 969, 1281, 1441
MaeIII	GTNAC	3 cut(s)	916, 999, 1008
MalI	GATC	5 cut(s)	73, 353, 756, 819, 981
MboI	GATC	5 cut(s)	71, 351, 754, 817, 979
MboII	GAAGA	5 cut(s)	38, 296, 383, 806, 1262
MflI	RGATCY	1 cut(s)	754
MhlI	GDGCHC	1 cut(s)	1247
MlyI	GAGTC	6 cut(s)	107, 155, 817, 1016, 1135, 1199
MnlI	CCTC	9 cut(s)	249, 312, 420, 434, 550, 685, 830, 948, 1133
MroXI	GAANNNNTTC	2 cut(s)	45, 720
MseI	TTAA	6 cut(s)	470, 522, 686, 1361, 1383, 1389
MslI	CAYNNNNRTG	2 cut(s)	54, 1134
MspI	CCGG	2 cut(s)	332, 1114
MspR9I	CCNGG	1 cut(s)	1319
Mva1269I	GAATGC	2 cut(s)	188, 583
MvaI	CCWGG	1 cut(s)	1319
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	83, 851
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	5 cut(s)	71, 351, 754, 817, 979
NlaIII	CATG	8 cut(s)	224, 259, 318, 601, 659, 1047, 1133, 1228
NlaIV	GGNNCC	1 cut(s)	330
NmuCI	GTSAC	3 cut(s)	916, 999, 1008
NspI	RCATGY	2 cut(s)	318, 659
PaeI	GCATGC	1 cut(s)	318
PagI	TCATGA	2 cut(s)	1129, 1224
PctI	GAATGC	2 cut(s)	188, 583
PdmI	GAANNNNTTC	2 cut(s)	45, 720
PfeI	GAWTC	7 cut(s)	419, 485, 1022, 1040, 1052, 1343, 1394
PkrI	GCNGC	3 cut(s)	460, 844, 880
PleI	GAGTC	6 cut(s)	107, 155, 816, 1015, 1134, 1199
PpsI	GAGTC	6 cut(s)	107, 155, 816, 1015, 1134, 1199
PshAI	GACNNNNGTC	2 cut(s)	165, 807
Psp6I	CCWGG	1 cut(s)	1317
PspGI	CCWGG	1 cut(s)	1317
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	167, 890, 943
PstI	CTGCAG	2 cut(s)	669, 883
PstNI	CAGNNNCTG	3 cut(s)	673, 920, 1208
PsuI	RGATCY	1 cut(s)	754
RsaI	GTAC	1 cut(s)	24
RsaNI	GTAC	1 cut(s)	23
RseI	CAYNNNNRTG	2 cut(s)	54, 1134
SaqAI	TTAA	6 cut(s)	470, 522, 686, 1361, 1383, 1389
SatI	GCNGC	3 cut(s)	459, 843, 879
Sau3AI	GATC	5 cut(s)	71, 351, 754, 817, 979
Sau96I	GGNCC	3 cut(s)	167, 890, 943
ScaI	AGTACT	1 cut(s)	24
SchI	GAGTC	6 cut(s)	107, 155, 817, 1016, 1135, 1199
ScrFI	CCNGG	1 cut(s)	1319
SduI	GDGCHC	1 cut(s)	1247
SfaNI	GCATC	3 cut(s)	46, 261, 1001
SfcI	CTRYAG	3 cut(s)	26, 665, 879
SinI	GGWCC	2 cut(s)	167, 943
SmiMI	CAYNNNNRTG	2 cut(s)	54, 1134
SmlI	CTYRAG	2 cut(s)	435, 1157
SmoI	CTYRAG	2 cut(s)	435, 1157
SphI	GCATGC	1 cut(s)	318
SsiI	CCGC	1 cut(s)	416
SspMI	CTAG	5 cut(s)	342, 642, 969, 1281, 1441
StyD4I	CCNGG	1 cut(s)	1317
StyI	CCWWGG	2 cut(s)	117, 758
TaqI	TCGA	4 cut(s)	284, 354, 575, 1088
TatI	WGTACW	1 cut(s)	22
TfiI	GAWTC	7 cut(s)	419, 485, 1022, 1040, 1052, 1343, 1394
Tru1I	TTAA	6 cut(s)	470, 522, 686, 1361, 1383, 1389
Tru9I	TTAA	6 cut(s)	470, 522, 686, 1361, 1383, 1389
TscAI	CASTG	4 cut(s)	93, 925, 1002, 1071
TseFI	GTSAC	3 cut(s)	916, 999, 1008
TseI	GCWGC	3 cut(s)	458, 842, 878
Tsp45I	GTSAC	3 cut(s)	916, 999, 1008
TspRI	CASTG	4 cut(s)	93, 925, 1002, 1071
VneI	GTGCAC	1 cut(s)	1243
VpaK11BI	GGWCC	2 cut(s)	167, 943
XapI	RAATTY	6 cut(s)	10, 697, 961, 1179, 1253, 1355
XceI	RCATGY	2 cut(s)	318, 659
XmnI	GAANNNNTTC	2 cut(s)	45, 720
XspI	CTAG	5 cut(s)	342, 642, 969, 1281, 1441
ZrmI	AGTACT	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.