FvH4_5g28880

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
19989209 .. 19992339
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28880.t4

Sequence Viewer

Length: 1821 bp
ATGGTTAGAAATTTAACCCCGGTACTACAGAGAGAGTTGGAAAATCTTCACAAAGATGCTGATAGTCGTAGATTAGCAATGAAAGCACTCAAGTCCTATGTGAAACATTTGGACTCCAAGGCAATCCCTATGTTTCTTGCCCAAGTTTCCCAGTCTAAAGAAACTGCTCCTTTGAATGGGGAATGCACCATTTCGCTCTATGAAGTTCTTGCTCGTGTTCATGGCGTCAAAATCGTCCCTCTCATAACCAACATCATGGCAACCATAATCAAGACTCTAGCTTCCAGTGCAGGGTCTTTCCCTCTTCAACAAGCATGCTCAAAGGTGGTTCCGGCCATCGCTAGATATGGGATTGATCCTACCACCCCTCAAGACAAGAAGAGGCATATTATTCATTCACTATGCAATCCCCTCGCGGATTCCCTCTTGGGTTCTCAAGAGAGCTTGACTTCTGGAGCTGCCCTTTGCTTAAAGGCTCTTGTGGACTCGGATAATTGGTATTTTGCTTCAGATGAGATGGTTAATAAGGTTTGTCAGAATGTTTCTGGGGCTTTGGAGGAGAAATATACTCAGTCAAATGCACACATGGGTCTGGTCATGTCTCTTGCAAAGCACAATGCTATAATAGTTGAACCGTATGCTAGGTTGTTGATACATGCTGGACTGCAGATATTGAACAATGGTTTAATAGAGGGGAATTCTCAGAAACGCTTGGAAGCTATTCAAATGGTGAACTTCCTGATGAAATGCTTAGATCCTTGGAGCATTTTATCTGAGCTTGAGTTGGTAATTGAAGAAATGGACAAGAGTCAGTCAGATCAGATGGCTTATGTAGCAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGCTGCAGATAAAGGCCCAAAACTTGAAAAGGCTCATTCAGTCAGTGGCTCAAACTTTAGTAGGAGAGACCATAGTAGGAGGCGAAATTTATCTAGTGCTGGCGATCAGTCCCTTGCATCGGTGTCACCTGAGTCACAGACCCTTGATTCCTTCACAGGATATGATTCATGGGTTGAATCACCTATTGCAGCGAGGCAGGTTTCTCAAAACTCAAGTTATGATTGTAGGAGTGTCAATCGGAAACTTTGGAGTCATGAGTGTGGAGGAGTTGATGTGTCTCTCAAGGATGGTCTGTTCTCAGGGATTGCTCACGAAAATGGCTACTCTAATGCACCTTCAGACTCTGGGAATAATCAGTTCATGAACAGCGAAGTTGAATGCACACAAGAATTTTCAGGTTTCCTTCAAAGAAATCCTAGGAATGGAGTATCAAGAAGTGCCACAACCAGTCCCCTGAGGTCACGAACTCCAATTGATGTTGATAATATCATCCTCAAAACTCCTAGGAGGCTCGTTCATTCTCTTCAGGATCCAAATAATGTCAACTCAGACTTCTCTGAGAAACAAACTAGAAGATTTAGGAGTTTATCCTTGAGCGAAGATTGCAGCCCAAATGGCAGGTACAATGGTTACTCACATGATGCCACTTATGACTGCAATGGTAGCTTCTGTGATGGTGGTGGTGTGCAGTTCCAAGGTGGCCCTGAATCTGTATCATCAACAGATGGTATTCCTAAAGAAGGTGACTTGCACATGTTTCAAGATGCTGTTCTCGAAATAAAATCAGAAATTCAAGATTCCAGCATCATCAGAAAACCCCTTCGCAAGGCTGCTGCAAAATTCTTCTGTGGTCTTTCTTTTGCAGTACTTGCAGTAATTGTTCTGTTAGCTTTGATTACAGCTCAAGGTCCAAGTTATGAAAGTTATTATCTAGTCCCAACTTAG

Protein Analysis

607

Amino Acids

66.41

Weight (kDa)

6.58

Isoelectric Point (pI)

55.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 18 - 217 2.6e-17 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1063, 1485
AccII CGCG 1 cut(s) 416
AciI CCGC 1 cut(s) 416
AclWI GGATC 4 cut(s) 350, 749, 1400, 1413
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 6 cut(s) 10, 697, 961, 1265, 1665, 1715
AcuI CTGAAG 3 cut(s) 492, 1197, 1385
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 3 cut(s) 24, 1499, 1743
AfiI CCNNNNNNNGG 6 cut(s) 176, 291, 994, 1298, 1616, 1702
AflIII ACRYGT 1 cut(s) 1629
AloI GAACNNNNNNTCC 2 cut(s) 1154, 1186
Alw26I GTCTC 3 cut(s) 606, 936, 1158
AlwI GGATC 4 cut(s) 350, 749, 1400, 1413
AlwNI CAGNNNCTG 2 cut(s) 842, 1220
AoxI GGCC 3 cut(s) 333, 889, 1576
ApeKI GCWGC 7 cut(s) 458, 842, 878, 1064, 1482, 1706, 1709
ApoI RAATTY 6 cut(s) 10, 697, 961, 1265, 1665, 1715
Asp700I GAANNNNTTC 2 cut(s) 45, 720
AspA2I CCTAGG 2 cut(s) 1292, 1379
AspS9I GGNCC 3 cut(s) 890, 1577, 1784
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 4 cut(s) 742, 993, 1047, 1631
AvaII GGWCC 1 cut(s) 1784
AvrII CCTAGG 2 cut(s) 1292, 1379
AxyI CCTNAGG 1 cut(s) 1331
BaeI ACNNNNGTAYC 2 cut(s) 1489, 1522
BamHI GGATCC 1 cut(s) 1405
BauI CACGAG 1 cut(s) 213
BbvI GCAGC 7 cut(s) 445, 829, 865, 1076, 1494, 1693, 1696
BccI CCATC 6 cut(s) 344, 511, 817, 1157, 1544, 1595
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 3 cut(s) 606, 936, 1158
BfaI CTAG 8 cut(s) 278, 342, 642, 969, 1293, 1380, 1446, 1808
BfmI CTRYAG 3 cut(s) 26, 665, 879
BfuAI ACCTGC 2 cut(s) 1063, 1485
BglI GCCNNNNNGGC 1 cut(s) 1491
BisI GCNGC 7 cut(s) 459, 843, 879, 1065, 1483, 1707, 1710
BlnI CCTAGG 2 cut(s) 1292, 1379
BlsI GCNGC 7 cut(s) 460, 844, 880, 1066, 1484, 1708, 1711
BmcAI AGTACT 1 cut(s) 1743
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 1784
BmgT120I GGNCC 3 cut(s) 890, 1577, 1784
BmiI GGNNCC 2 cut(s) 330, 1407
BmrFI CCNGG 1 cut(s) 20
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 5 cut(s) 46, 1001, 1507, 1630, 1689
BmuI ACTGGG 1 cut(s) 145
BoxI GACNNNNGTC 1 cut(s) 807
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 8 cut(s) 74, 354, 420, 800, 1072, 1142, 1489, 1764
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 936
BsaJI CCNNGG 6 cut(s) 18, 117, 758, 1292, 1379, 1570
BsaXI ACNNNNNCTCC 2 cut(s) 1134, 1164
Bsc4I CCNNNNNNNGG 6 cut(s) 176, 291, 994, 1298, 1616, 1702
Bse1I ACTGG 3 cut(s) 151, 285, 1323
Bse21I CCTNAGG 1 cut(s) 1331
Bse3DI GCAATG 2 cut(s) 84, 1540
BseDI CCNNGG 6 cut(s) 18, 117, 758, 1292, 1379, 1570
BseGI GGATG 2 cut(s) 1168, 1365
BseLI CCNNNNNNNGG 6 cut(s) 176, 291, 994, 1298, 1616, 1702
BseMI GCAATG 2 cut(s) 84, 1540
BseMII CTCAG 8 cut(s) 584, 716, 765, 996, 1188, 1322, 1425, 1437
BseNI ACTGG 3 cut(s) 151, 285, 1323
BseRI GAGGAG 2 cut(s) 572, 1155
BseXI GCAGC 7 cut(s) 445, 829, 865, 1076, 1494, 1693, 1696
BsgI GTGCAG 2 cut(s) 309, 1583
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 3 cut(s) 335, 891, 1578
BsiSI CCGG 2 cut(s) 20, 332
BslFI GGGAC 4 cut(s) 221, 970, 1311, 1796
BslI CCNNNNNNNGG 6 cut(s) 176, 291, 994, 1298, 1616, 1702
BsmAI GTCTC 3 cut(s) 606, 936, 1158
BsmFI GGGAC 4 cut(s) 221, 970, 1311, 1796
BsmI GAATGC 2 cut(s) 188, 1259
BsnI GGCC 3 cut(s) 335, 891, 1578
Bso31I GGTCTC 1 cut(s) 936
Bsp143I GATC 5 cut(s) 355, 754, 817, 979, 1405
BspACI CCGC 1 cut(s) 416
BspANI GGCC 3 cut(s) 335, 891, 1578
BspCNI CTCAG 8 cut(s) 583, 715, 766, 997, 1187, 1323, 1426, 1436
BspFNI CGCG 1 cut(s) 416
BspHI TCATGA 2 cut(s) 1129, 1236
BspLI GGNNCC 2 cut(s) 330, 1407
BspMAI CTGCAG 2 cut(s) 669, 883
BspMI ACCTGC 2 cut(s) 1063, 1485
BspPI GGATC 4 cut(s) 350, 749, 1400, 1413
BspTNI GGTCTC 1 cut(s) 936
BsrDI GCAATG 2 cut(s) 84, 1540
BsrI ACTGG 3 cut(s) 151, 285, 1323
BssECI CCNNGG 6 cut(s) 18, 117, 758, 1292, 1379, 1570
BssMI GATC 5 cut(s) 355, 754, 817, 979, 1405
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 5 cut(s) 117, 758, 1292, 1379, 1570
Bst2BI CACGAG 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 636
Bst6I CTCTTC 3 cut(s) 309, 374, 1404
BstACI GRCGYC 1 cut(s) 225
BstAPI GCANNNNNTGC 2 cut(s) 842, 1745
BstC8I GCNNGC 2 cut(s) 316, 976
BstENI CCTNNNNNAGG 2 cut(s) 1614, 1700
BstF5I GGATG 2 cut(s) 1168, 1365
BstFNI CGCG 1 cut(s) 416
BstKTI GATC 5 cut(s) 358, 757, 820, 982, 1408
BstMAI GTCTC 3 cut(s) 606, 936, 1158
BstMBI GATC 5 cut(s) 355, 754, 817, 979, 1405
BstMWI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1479, 1491, 1539, 1745
BstNSI RCATGY 3 cut(s) 318, 659, 1633
BstPAI GACNNNNGTC 1 cut(s) 807
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 3 cut(s) 26, 665, 879
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 7 cut(s) 445, 829, 865, 1076, 1494, 1693, 1696
BstX2I RGATCY 2 cut(s) 754, 1405
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 2 cut(s) 754, 1405
Bsu36I CCTNAGG 1 cut(s) 1331
BsuRI GGCC 3 cut(s) 335, 891, 1578
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 2 cut(s) 1168, 1365
BtsIMutI CAGTG 2 cut(s) 292, 925
BveI ACCTGC 2 cut(s) 1063, 1485
Cac8I GCNNGC 2 cut(s) 316, 976
CaiI CAGNNNCTG 2 cut(s) 842, 1220
CciI TCATGA 2 cut(s) 1129, 1236
Cfr13I GGNCC 3 cut(s) 890, 1577, 1784
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 23, 1498, 1742
CviQI GTAC 3 cut(s) 23, 1498, 1742
DpnI GATC 5 cut(s) 357, 756, 819, 981, 1407
DpnII GATC 5 cut(s) 355, 754, 817, 979, 1405
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 309, 374, 1404
EarI CTCTTC 3 cut(s) 309, 374, 1404
Eco130I CCWWGG 5 cut(s) 117, 758, 1292, 1379, 1570
Eco31I GGTCTC 1 cut(s) 936
Eco47I GGWCC 1 cut(s) 1784
Eco57I CTGAAG 3 cut(s) 492, 1197, 1385
Eco81I CCTNAGG 1 cut(s) 1331
EcoNI CCTNNNNNAGG 2 cut(s) 1614, 1700
EcoRI GAATTC 1 cut(s) 697
EcoT14I CCWWGG 5 cut(s) 117, 758, 1292, 1379, 1570
ErhI CCWWGG 5 cut(s) 117, 758, 1292, 1379, 1570
FaqI GGGAC 4 cut(s) 221, 970, 1311, 1796
Fnu4HI GCNGC 7 cut(s) 459, 843, 879, 1065, 1483, 1707, 1710
FokI GGATG 2 cut(s) 1175, 1352
Fsp4HI GCNGC 7 cut(s) 459, 843, 879, 1065, 1483, 1707, 1710
FspBI CTAG 8 cut(s) 278, 342, 642, 969, 1293, 1380, 1446, 1808
GluI GCNGC 7 cut(s) 459, 843, 879, 1065, 1483, 1707, 1710
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 3 cut(s) 335, 891, 1578
HapII CCGG 2 cut(s) 20, 332
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 225
HincII GTYRAC 1 cut(s) 1420
HindII GTYRAC 1 cut(s) 1420
HpaII CCGG 2 cut(s) 20, 332
HphI GGTGA 4 cut(s) 742, 993, 1047, 1631
Hpy166II GTNNAC 3 cut(s) 484, 733, 1420
Hpy8I GTNNAC 3 cut(s) 484, 733, 1420
HpyAV CCTTC 5 cut(s) 1036, 1221, 1289, 1610, 1706
HpyCH4III ACNGT 1 cut(s) 636
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1479, 1491, 1539, 1745
Hsp92I GRCGYC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 355, 754, 817, 979, 1405
LmnI GCTCC 3 cut(s) 172, 455, 762
Lsp1109I GCAGC 7 cut(s) 445, 829, 865, 1076, 1494, 1693, 1696
LweI GCATC 5 cut(s) 46, 1001, 1507, 1630, 1689
MaeI CTAG 8 cut(s) 278, 342, 642, 969, 1293, 1380, 1446, 1808
MaeIII GTNAC 5 cut(s) 999, 1008, 1335, 1505, 1619
MalI GATC 5 cut(s) 357, 756, 819, 981, 1407
MboI GATC 5 cut(s) 355, 754, 817, 979, 1405
MboII GAAGA 8 cut(s) 38, 296, 391, 806, 1391, 1461, 1487, 1711
MfeI CAATTG 1 cut(s) 1347
MflI RGATCY 2 cut(s) 754, 1405
MlyI GAGTC 7 cut(s) 107, 268, 479, 817, 1016, 1135, 1211
MmeI TCCRAC 1 cut(s) 18
MroXI GAANNNNTTC 2 cut(s) 45, 720
MseI TTAA 4 cut(s) 14, 470, 522, 686
MslI CAYNNNNRTG 3 cut(s) 54, 1134, 1191
MspI CCGG 2 cut(s) 20, 332
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 1347
Mva1269I GAATGC 2 cut(s) 188, 1259
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1479, 1491, 1539, 1745
NciI CCSGG 1 cut(s) 20
NdeII GATC 5 cut(s) 355, 754, 817, 979, 1405
NlaIV GGNNCC 2 cut(s) 330, 1407
NmuCI GTSAC 4 cut(s) 999, 1008, 1335, 1619
NspI RCATGY 3 cut(s) 318, 659, 1633
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 2 cut(s) 1129, 1236
PciI ACATGT 1 cut(s) 1629
PctI GAATGC 2 cut(s) 188, 1259
PdmI GAANNNNTTC 2 cut(s) 45, 720
PfeI GAWTC 6 cut(s) 419, 1022, 1040, 1052, 1583, 1673
PkrI GCNGC 7 cut(s) 460, 844, 880, 1066, 1484, 1708, 1711
PleI GAGTC 7 cut(s) 107, 268, 479, 816, 1015, 1134, 1211
PpsI GAGTC 7 cut(s) 107, 268, 479, 816, 1015, 1134, 1211
PscI ACATGT 1 cut(s) 1629
PshAI GACNNNNGTC 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 330, 1407
PspPI GGNCC 3 cut(s) 890, 1577, 1784
PstI CTGCAG 2 cut(s) 669, 883
PstNI CAGNNNCTG 2 cut(s) 842, 1220
PsuI RGATCY 2 cut(s) 754, 1405
RsaI GTAC 3 cut(s) 24, 1499, 1743
RsaNI GTAC 3 cut(s) 23, 1498, 1742
RseI CAYNNNNRTG 3 cut(s) 54, 1134, 1191
SaqAI TTAA 4 cut(s) 14, 470, 522, 686
SatI GCNGC 7 cut(s) 459, 843, 879, 1065, 1483, 1707, 1710
Sau3AI GATC 5 cut(s) 355, 754, 817, 979, 1405
Sau96I GGNCC 3 cut(s) 890, 1577, 1784
ScaI AGTACT 1 cut(s) 1743
SchI GAGTC 7 cut(s) 107, 268, 479, 817, 1016, 1135, 1211
ScrFI CCNGG 1 cut(s) 20
SfaNI GCATC 5 cut(s) 46, 1001, 1507, 1630, 1689
SfcI CTRYAG 3 cut(s) 26, 665, 879
SinI GGWCC 1 cut(s) 1784
SmiMI CAYNNNNRTG 3 cut(s) 54, 1134, 1191
SmlI CTYRAG 8 cut(s) 89, 369, 435, 779, 1087, 1157, 1468, 1779
SmoI CTYRAG 8 cut(s) 89, 369, 435, 779, 1087, 1157, 1468, 1779
SphI GCATGC 1 cut(s) 318
SsiI CCGC 1 cut(s) 416
SspMI CTAG 8 cut(s) 278, 342, 642, 969, 1293, 1380, 1446, 1808
StyD4I CCNGG 1 cut(s) 18
StyI CCWWGG 5 cut(s) 117, 758, 1292, 1379, 1570
TaaI ACNGT 1 cut(s) 636
TaqI TCGA 1 cut(s) 1650
TatI WGTACW 1 cut(s) 1741
TfiI GAWTC 6 cut(s) 419, 1022, 1040, 1052, 1583, 1673
Tru1I TTAA 4 cut(s) 14, 470, 522, 686
Tru9I TTAA 4 cut(s) 14, 470, 522, 686
TscAI CASTG 2 cut(s) 292, 925
TseFI GTSAC 4 cut(s) 999, 1008, 1335, 1619
TseI GCWGC 7 cut(s) 458, 842, 878, 1064, 1482, 1706, 1709
Tsp45I GTSAC 4 cut(s) 999, 1008, 1335, 1619
TspRI CASTG 2 cut(s) 292, 925
VpaK11BI GGWCC 1 cut(s) 1784
XagI CCTNNNNNAGG 2 cut(s) 1614, 1700
XapI RAATTY 6 cut(s) 10, 697, 961, 1265, 1665, 1715
XceI RCATGY 3 cut(s) 318, 659, 1633
XmaJI CCTAGG 2 cut(s) 1292, 1379
XmnI GAANNNNTTC 2 cut(s) 45, 720
XspI CTAG 8 cut(s) 278, 342, 642, 969, 1293, 1380, 1446, 1808
ZrmI AGTACT 1 cut(s) 1743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.