Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Reverse (-)

319761 .. 321533

Gene Structure 1773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g00260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGGGAAGTGTCAGTCTGATCGGATGGCTTATGTCTCAAGGGCTGCCTATGAAGCTCTGCAAACGGCAAGGCGAACAGCTGCAGGTAAAGGTTCGAGACATGAAAGGGCTCCTGGTTCGGCCAGTGGGTCAAATTTTAGTAGGAGAGACCAGAGCAGGAGGCGAAACTTATCAAGTGCCAGCGACCATTCTCCTGCATCAGTGTCACCCAAATCACAGACTCTAGATTCCTCTGGTAGCCGAAACTCAATTTATGATTGTAAAAGTGTAAACCGGAAGGTTTGGAGTCATGAGAATGGAGGAGTTGACGTGTCTCTCAAGGATGGTTTGTTCTCGGAGATTGCTCGGGGTGGTGCCTACTCGAATGGATATCCAGGAGATTGCAATGAGGAATTTACAGGGTTCCTGCAAACAAATCCTAGAAATGGAGTATCAAGAAGCACCACAACTAGTCCTTGGTTGTTGGTAACTGTTATTCGTAACAGCTTAAGTAGTTTGTCAATGAATGTTTTATTTCCGACGAAGGTGTTGTGCTTACTCAAGCTGTCAACTGAAACTTTACTTCCATTCAGATCTGCCAATTTTATGATTTTCTTGTTTATTATCAATCTTGGTATGGTATTGCATGTTATGGTCTTGATTTTGACCAATATTGCTTCTCCTGTGCTTCAAAGGTCTCGTACTCCACTCAATGTGGACAGCATCATCTTCAATACTCCGAGAAGGCTTGTTCACTCTCTTCAGGAACCAAATAATGCCGACTCAAAGTTCTCCAAAAAACCAGCAAGAAGATCTAGAAGTTTATCCATGAACGAGTTTGATTGGAGCCCAAATGCCAGATACGGTCAAGATGGTTGTTCATATGGTGCGAACTATGATGACGGAGAGCATGGTAGCTTCTACGGCGGCAGTGAGCAGTTTGAAGGTGATCCTGAATCAGTGTCATCAACAGATTGCATTCCAGCGGATGCTGATTTGCAGGTGTCTCATGAGGTGGTTCCAGAAAACAAAGTATCTCATGGGGTGGTTCCAGAAAATAAAACACAAGTTCAAAAGTCTGGCATAAAAAGTCCCTATCGAAAGGCTGCTGTTACATTGTTTTGTGGTGTTTCTTTCGCTCTACTTGCAGTAGCTATGCCACTTCTTTGGATTAATGATCAAGGCGAATGGCATGACGGTTACCATCTAGTTCCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

400

Amino Acids

43.77

Weight (kDa)

8.89

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
Acc36I	ACCTGC	2 cut(s)	74, 970
AccB1I	GGYRCC	1 cut(s)	353
AciI	CCGC	2 cut(s)	906, 965
AclWI	GGATC	1 cut(s)	923
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	133, 392
AcuI	CTGAAG	1 cut(s)	725
AfaI	GTAC	1 cut(s)	682
AfiI	CCNNNNNNNGG	1 cut(s)	425
AflII	CTTAAG	1 cut(s)	487
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	4 cut(s)	671, 712, 923, 1052
AhlI	ACTAGT	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	2 cut(s)	112, 373
AloI	GAACNNNNNNTCC	2 cut(s)	314, 346
AluBI	AGCT	6 cut(s)	56, 80, 486, 544, 897, 1133
AluI	AGCT	6 cut(s)	56, 80, 486, 544, 897, 1133
Alw26I	GTCTC	6 cut(s)	40, 91, 141, 318, 681, 990
AlwI	GGATC	1 cut(s)	923
Ama87I	CYCGRG	1 cut(s)	345
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	3 cut(s)	44, 80, 1085
ApoI	RAATTY	2 cut(s)	133, 392
AseI	ATTAAT	1 cut(s)	1152
AsuHPI	GGTGA	2 cut(s)	198, 938
AvaI	CYCGRG	1 cut(s)	345
BanI	GGYRCC	1 cut(s)	353
BanII	GRGCYC	2 cut(s)	112, 830
BbvI	GCAGC	3 cut(s)	31, 67, 1072
BccI	CCATC	4 cut(s)	19, 317, 845, 1191
BceAI	ACGGC	2 cut(s)	81, 919
BciT130I	CCWGG	2 cut(s)	114, 375
BclI	TGATCA	1 cut(s)	1156
BcoDI	GTCTC	6 cut(s)	40, 91, 141, 318, 681, 990
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	5 cut(s)	224, 420, 450, 795, 1187
BfmI	CTRYAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	487
BfuAI	ACCTGC	2 cut(s)	74, 970
BglII	AGATCT	2 cut(s)	572, 791
BisI	GCNGC	4 cut(s)	45, 81, 907, 1086
BlsI	GCNGC	4 cut(s)	46, 82, 908, 1087
Bme1390I	CCNGG	2 cut(s)	114, 375
BmeT110I	CYCGRG	1 cut(s)	345
BmgBI	CACGTC	1 cut(s)	310
BmiI	GGNNCC	7 cut(s)	111, 355, 404, 747, 827, 999, 1029
BmrFI	CCNGG	2 cut(s)	114, 375
BmsI	GCATC	3 cut(s)	206, 711, 958
BpuEI	CTTGAG	3 cut(s)	22, 302, 524
BsaI	GGTCTC	2 cut(s)	141, 681
BsaJI	CCNNGG	1 cut(s)	455
BsaWI	WCCGGW	1 cut(s)	273
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	391
BseBI	CCWGG	2 cut(s)	114, 375
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	3 cut(s)	30, 328, 973
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	315
BseXI	GCAGC	3 cut(s)	31, 67, 1072
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	353
BsiHKCI	CYCGRG	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	274
BslFI	GGGAC	1 cut(s)	1056
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmAI	GTCTC	6 cut(s)	40, 91, 141, 318, 681, 990
BsmFI	GGGAC	1 cut(s)	1056
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	1 cut(s)	122
Bso31I	GGTCTC	2 cut(s)	141, 681
BsoBI	CYCGRG	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	112, 830
Bsp143I	GATC	5 cut(s)	19, 572, 791, 928, 1156
BspACI	CCGC	2 cut(s)	906, 965
BspANI	GGCC	1 cut(s)	122
BspHI	TCATGA	2 cut(s)	289, 988
BspLI	GGNNCC	7 cut(s)	111, 355, 404, 747, 827, 999, 1029
BspMAI	CTGCAG	1 cut(s)	85
BspMI	ACCTGC	2 cut(s)	74, 970
BspPI	GGATC	1 cut(s)	923
BspT107I	GGYRCC	1 cut(s)	353
BspTI	CTTAAG	1 cut(s)	487
BspTNI	GGTCTC	2 cut(s)	141, 681
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	5 cut(s)	19, 572, 791, 928, 1156
BssT1I	CCWWGG	1 cut(s)	455
Bst2UI	CCWGG	2 cut(s)	114, 375
Bst4CI	ACNGT	3 cut(s)	472, 845, 1178
Bst6I	CTCTTC	1 cut(s)	744
BstAFI	CTTAAG	1 cut(s)	487
BstC8I	GCNNGC	1 cut(s)	181
BstEII	GGTNACC	1 cut(s)	1178
BstF5I	GGATG	3 cut(s)	30, 328, 973
BstKTI	GATC	5 cut(s)	22, 575, 794, 931, 1159
BstMAI	GTCTC	6 cut(s)	40, 91, 141, 318, 681, 990
BstMBI	GATC	5 cut(s)	19, 572, 791, 928, 1156
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 903, 1124
BstNI	CCWGG	2 cut(s)	114, 375
BstNSI	RCATGY	1 cut(s)	629
BstPI	GGTNACC	1 cut(s)	1178
BstSCI	CCNGG	2 cut(s)	112, 373
BstSFI	CTRYAG	1 cut(s)	81
BstV1I	GCAGC	3 cut(s)	31, 67, 1072
BstX2I	RGATCY	2 cut(s)	572, 791
BstXI	CCANNNNNNTGG	1 cut(s)	1146
BstYI	RGATCY	2 cut(s)	572, 791
BsuRI	GGCC	1 cut(s)	122
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	30, 328, 973
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	4 cut(s)	130, 207, 916, 945
BveI	ACCTGC	2 cut(s)	74, 970
Cac8I	GCNNGC	1 cut(s)	181
CciI	TCATGA	2 cut(s)	289, 988
Csp6I	GTAC	1 cut(s)	681
CviAII	CATG	8 cut(s)	101, 290, 626, 808, 890, 989, 1019, 1172
CviQI	GTAC	1 cut(s)	681
DpnI	GATC	5 cut(s)	21, 574, 793, 930, 1158
DpnII	GATC	5 cut(s)	19, 572, 791, 928, 1156
EaeI	YGGCCR	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	112, 830
Eco31I	GGTCTC	2 cut(s)	141, 681
Eco32I	GATATC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	725
Eco88I	CYCGRG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	1178
EcoO65I	GGTNACC	1 cut(s)	1178
EcoRII	CCWGG	2 cut(s)	112, 373
EcoRV	GATATC	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	2 cut(s)	112, 830
ErhI	CCWWGG	1 cut(s)	455
FaeI	CATG	8 cut(s)	104, 293, 629, 811, 893, 992, 1022, 1175
FaqI	GGGAC	1 cut(s)	1056
FatI	CATG	8 cut(s)	100, 289, 625, 807, 889, 988, 1018, 1171
FauNDI	CATATG	1 cut(s)	862
FbaI	TGATCA	1 cut(s)	1156
Fnu4HI	GCNGC	4 cut(s)	45, 81, 907, 1086
FokI	GGATG	3 cut(s)	37, 335, 980
FriOI	GRGCYC	2 cut(s)	112, 830
Fsp4HI	GCNGC	4 cut(s)	45, 81, 907, 1086
FspBI	CTAG	5 cut(s)	224, 420, 450, 795, 1187
GluI	GCNGC	4 cut(s)	45, 81, 907, 1086
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	8 cut(s)	104, 293, 629, 811, 893, 992, 1022, 1175
HincII	GTYRAC	2 cut(s)	307, 549
HindII	GTYRAC	2 cut(s)	307, 549
HinfI	GANTC	5 cut(s)	220, 227, 286, 761, 935
HpaII	CCGG	1 cut(s)	274
HphI	GGTGA	2 cut(s)	198, 938
Hpy166II	GTNNAC	5 cut(s)	271, 307, 549, 697, 733
Hpy188I	TCNGA	6 cut(s)	19, 24, 337, 519, 572, 720
Hpy8I	GTNNAC	5 cut(s)	271, 307, 549, 697, 733
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	4 cut(s)	271, 517, 717, 917
HpyCH4III	ACNGT	3 cut(s)	472, 845, 1178
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	9 cut(s)	61, 83, 197, 384, 409, 625, 957, 979, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 903, 1124
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	8 cut(s)	104, 293, 629, 811, 893, 992, 1022, 1175
Ksp22I	TGATCA	1 cut(s)	1156
Kzo9I	GATC	5 cut(s)	19, 572, 791, 928, 1156
LmnI	GCTCC	2 cut(s)	115, 825
Lsp1109I	GCAGC	3 cut(s)	31, 67, 1072
LweI	GCATC	3 cut(s)	206, 711, 958
MaeI	CTAG	5 cut(s)	224, 420, 450, 795, 1187
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	5 cut(s)	204, 466, 479, 1090, 1178
MalI	GATC	5 cut(s)	21, 574, 793, 930, 1158
MboI	GATC	5 cut(s)	19, 572, 791, 928, 1156
MboII	GAAGA	3 cut(s)	700, 731, 801
MflI	RGATCY	2 cut(s)	572, 791
MhlI	GDGCHC	2 cut(s)	112, 830
MluCI	AATT	4 cut(s)	133, 249, 392, 580
MlyI	GAGTC	3 cut(s)	214, 295, 755
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	5 cut(s)	153, 241, 293, 382, 985
MseI	TTAA	3 cut(s)	488, 1152, 1198
MslI	CAYNNNNRTG	1 cut(s)	294
MspA1I	CMGCKG	2 cut(s)	80, 965
MspCI	CTTAAG	1 cut(s)	487
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	2 cut(s)	114, 375
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	2 cut(s)	114, 375
MwoI	GCNNNNNNNGC	3 cut(s)	53, 903, 1124
NdeI	CATATG	1 cut(s)	862
NdeII	GATC	5 cut(s)	19, 572, 791, 928, 1156
NlaIII	CATG	8 cut(s)	104, 293, 629, 811, 893, 992, 1022, 1175
NlaIV	GGNNCC	7 cut(s)	111, 355, 404, 747, 827, 999, 1029
NmuCI	GTSAC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	629
PagI	TCATGA	2 cut(s)	289, 988
PaqCI	CACCTGC	1 cut(s)	970
PctI	GAATGC	1 cut(s)	957
PfeI	GAWTC	2 cut(s)	227, 935
PfoI	TCCNGGA	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	46, 82, 908, 1087
PleI	GAGTC	3 cut(s)	214, 294, 755
PpsI	GAGTC	3 cut(s)	214, 294, 755
PshBI	ATTAAT	1 cut(s)	1152
Psp6I	CCWGG	2 cut(s)	112, 373
PspEI	GGTNACC	1 cut(s)	1178
PspGI	CCWGG	2 cut(s)	112, 373
PspN4I	GGNNCC	7 cut(s)	111, 355, 404, 747, 827, 999, 1029
PstI	CTGCAG	1 cut(s)	85
PsuI	RGATCY	2 cut(s)	572, 791
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	682
RsaNI	GTAC	1 cut(s)	681
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	488, 1152, 1198
SatI	GCNGC	4 cut(s)	45, 81, 907, 1086
Sau3AI	GATC	5 cut(s)	19, 572, 791, 928, 1156
SchI	GAGTC	3 cut(s)	214, 295, 755
ScrFI	CCNGG	2 cut(s)	114, 375
SduI	GDGCHC	2 cut(s)	112, 830
SfaNI	GCATC	3 cut(s)	206, 711, 958
SfcI	CTRYAG	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	4 cut(s)	37, 317, 487, 539
SmoI	CTYRAG	4 cut(s)	37, 317, 487, 539
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	4 cut(s)	133, 249, 392, 580
SsiI	CCGC	2 cut(s)	906, 965
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	5 cut(s)	224, 420, 450, 795, 1187
StyD4I	CCNGG	2 cut(s)	112, 373
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	3 cut(s)	472, 845, 1178
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	3 cut(s)	95, 362, 1078
TasI	AATT	4 cut(s)	133, 249, 392, 580
TauI	GCSGC	1 cut(s)	909
TfiI	GAWTC	2 cut(s)	227, 935
Tru1I	TTAA	3 cut(s)	488, 1152, 1198
Tru9I	TTAA	3 cut(s)	488, 1152, 1198
TscAI	CASTG	4 cut(s)	130, 207, 916, 945
TseFI	GTSAC	1 cut(s)	204
TseI	GCWGC	3 cut(s)	44, 80, 1085
Tsp45I	GTSAC	1 cut(s)	204
TspDTI	ATGAA	5 cut(s)	66, 117, 518, 824, 849
TspGWI	ACGGA	1 cut(s)	897
TspRI	CASTG	4 cut(s)	130, 207, 916, 945
Vha464I	CTTAAG	1 cut(s)	487
VspI	ATTAAT	1 cut(s)	1152
XapI	RAATTY	2 cut(s)	133, 392
XbaI	TCTAGA	2 cut(s)	223, 794
XceI	RCATGY	1 cut(s)	629
XspI	CTAG	5 cut(s)	224, 420, 450, 795, 1187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.