MD14G1002300.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Forward (+)
357883 .. 361344
3462 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1002300.v1.1.491

Sequence Viewer

Length: 1791 bp
ATGAAAGCACTCAAATCCTATGTGAAAGATTTGGACTCCAAGGCAATCCCCATGTTTCTTGCTCAAGTTTCTCAGACTAAAGAAACTGGTTCTTTGTCTGGAGAATGCACCATTTCGCTCTATGAAGTTCTTGCTCGTGTTCACGGTGTCAAAATAGTCCCTCTAATAAACAGCATCATGGCCACCATAATCAAGACCTTGGCTTCGAGTGCGGGGTCTTTCCCTCTTCAACAGGCATGCTCAAAGGTCGTCCCAGCTATTGCTCGATATGGGATTGACCCAACCACCCCTGAAGACAAGAAGAGGCACATTATTCATTCACTCTGCACTCCTCTCTCAGATTCCCTCTTGGGTTCTCAAGAGAGCTTGACTTCTGGAGCTGCCCTTTGCTTAAGGGCTCTTGTTGACTCCGATAATTGGCGTTTTGCTTCTGATGAGATGGTCAATAGGGTCTGTCAGAATGTTTCTGGAGCTTTGGAGGAGAAGTCCACTCAGACAAATGCACACATGGGTCTGGTTATGGCTCTTGCAAAGCGTAATGCATTAATTGTTGAACCATATGCTAGGTTGTTGATACAAGCTGGAATCCGGATATTGAATACTGGTGTAGCGGAGGGGAATTCTCAGAAACGGTTGTCAGCTATTCAAATGGTGAATTTCTTGATGAAGTGCCTGGATCCTTGGAGCATTATCTCTGAGATTGAGTTGATAATTCAAGAAATGGAGAAGTGTCAGTCTGATCAGATGGCTTACGTCTCAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGCTGCAGATAAAGGTTCAAAACTTGAAAAGGCTCCTGGTTCAGCCTGTGGGTCAAATTTTAGTAGGAGAGACCATAGCAGGAGGCGAAACTTATCAAGTGGAGGTGATCAGTCTCCTGCATCAGTGTCACCTGAATCACAGACTCTGGATTCCTTTGCTGAATATGACTCATTTGTTGACTCACCTGTAACAATGAGTAGTCAGGCTACCCAAAACTCAATTTATGATTGTAGGAGCATAAACCGGAAGCTTTGGAGTCATGAGAATGGAGGAGTCGATGTGTCTCTCAAGGATGGTTTATTCTCGGAGATTGCTCAGGGTAGTGCCTTTGCGAATGGATTTCCAGGTAACTCTGGGAGTAATGAATTCATGAAATGCGATGGAGATTGCAATGAGGAATTTACAGGGTTCCAGCAAAGAAATCCTAGAAATGTAGTATCAAGAAGCACCACAACTAGTCCTCGGAGGTCTCGCACTCCAATCAACGTGGACAACATCATCTTCAATACTCCGAGAAGACTTGTTCACTCTCTTCAGGAACCAAATAATGCCAACTCAAAGTTCTCCGAAAAACTAGCTAGAAGATTTAGAAGTTTATCCATGAACGAATGTGATTGGAGCCCAAATGTCAGATATGATCAAGATGGTTATTCACATGGTGCAAACTATGATGACGGGGAGCATGGTAGCTTCTATGGTGGCAGTGAGCAGTTCGAAGGTGGTCCTGAATCAGTGTCATCAACAGATGGCATTCCAGGGGATGCTGATGTTCAGGTGCCTCATGAGGTGGTTCCAGAAAATGAAATATCTCATGAGGTGGTTCCAGAAAACCAAACAGTAGCTCAAAAGGCTGGCATAAAAAATCCCTATCGAAAGGCTGCTGTTAAGTTGTTTTGTGGTCTTTCTTTCACACTACTTGCAGTAGCTATGCCACTACTTTGGATTAATGACCACGGCGAAGGGCATGAAGGTTATTATCTAGTTCCAACTTAA

Protein Analysis

597

Amino Acids

65.07

Weight (kDa)

5.88

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 2 - 261 1.5e-13 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1573
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 2 cut(s) 212, 611
AclWI GGATC 2 cut(s) 671, 684
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 5 cut(s) 619, 655, 853, 1163, 1196
AcuI CTGAAG 2 cut(s) 312, 1316
AdeI CACNNNGTG 1 cut(s) 1457
AfiI CCNNNNNNNGG 1 cut(s) 417
AflII CTTAAG 1 cut(s) 391
AgsI TTSAA 9 cut(s) 230, 554, 598, 647, 716, 773, 816, 824, 1303
AhlI ACTAGT 1 cut(s) 1253
AjnI CCWGG 4 cut(s) 672, 832, 1141, 1552
AjuI GAANNNNNNNTTGG 2 cut(s) 1343, 1375
Alw26I GTCTC 5 cut(s) 760, 861, 915, 1086, 1272
AlwI GGATC 2 cut(s) 671, 684
AlwNI CAGNNNCTG 2 cut(s) 764, 943
Aor13HI TCCGGA 1 cut(s) 588
AoxI GGCC 1 cut(s) 180
ApeKI GCWGC 4 cut(s) 380, 764, 800, 1676
ApoI RAATTY 5 cut(s) 619, 655, 853, 1163, 1196
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AseI ATTAAT 2 cut(s) 545, 1743
AspS9I GGNCC 1 cut(s) 1520
AsuHPI GGTGA 4 cut(s) 664, 914, 918, 972
AsuII TTCGAA 1 cut(s) 1512
AvaII GGWCC 1 cut(s) 1520
BalI TGGCCA 1 cut(s) 182
BamHI GGATCC 1 cut(s) 676
BanI GGYRCC 1 cut(s) 1573
BanII GRGCYC 2 cut(s) 400, 1421
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 300, 1321
BbvI GCAGC 4 cut(s) 367, 751, 787, 1663
BccI CCATC 6 cut(s) 433, 739, 1085, 1172, 1436, 1538
BceAI ACGGC 1 cut(s) 1768
BciT130I CCWGG 4 cut(s) 674, 834, 1143, 1554
BclI TGATCA 3 cut(s) 739, 904, 1435
BcoDI GTCTC 5 cut(s) 760, 861, 915, 1086, 1272
BcuI ACTAGT 1 cut(s) 1253
BfaI CTAG 6 cut(s) 564, 1224, 1254, 1373, 1377, 1778
BfmI CTRYAG 1 cut(s) 801
BfrI CTTAAG 1 cut(s) 391
BisI GCNGC 4 cut(s) 381, 765, 801, 1677
BlsI GCNGC 4 cut(s) 382, 766, 802, 1678
Bme1390I CCNGG 4 cut(s) 674, 834, 1143, 1554
Bme18I GGWCC 1 cut(s) 1520
BmgT120I GGNCC 1 cut(s) 1520
BmiI GGNNCC 8 cut(s) 678, 831, 1208, 1338, 1418, 1575, 1590, 1620
BmrFI CCNGG 4 cut(s) 674, 834, 1143, 1554
BmsI GCATC 3 cut(s) 183, 926, 1549
BpiI GAAGAC 2 cut(s) 300, 1321
BpmI CTGGAG 3 cut(s) 120, 396, 489
Bpu10I CCTNAGC 1 cut(s) 1113
Bpu14I TTCGAA 1 cut(s) 1512
BpuEI CTTGAG 3 cut(s) 48, 342, 1070
BsaI GGTCTC 2 cut(s) 861, 1272
BsaJI CCNNGG 6 cut(s) 39, 198, 680, 1259, 1553, 1750
BsaWI WCCGGW 2 cut(s) 588, 1041
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 1062, 1092
Bsc4I CCNNNNNNNGG 1 cut(s) 417
Bse1I ACTGG 2 cut(s) 91, 607
Bse3DI GCAATG 1 cut(s) 1195
BseAI TCCGGA 1 cut(s) 588
BseBI CCWGG 4 cut(s) 674, 834, 1143, 1554
BseDI CCNNGG 6 cut(s) 39, 198, 680, 1259, 1553, 1750
BseGI GGATG 2 cut(s) 1096, 1564
BseLI CCNNNNNNNGG 1 cut(s) 417
BseMI GCAATG 1 cut(s) 1195
BseMII CTCAG 7 cut(s) 86, 351, 506, 638, 687, 771, 1127
BseNI ACTGG 2 cut(s) 91, 607
BseRI GAGGAG 3 cut(s) 321, 494, 1083
BseXI GCAGC 4 cut(s) 367, 751, 787, 1663
BseYI CCCAGC 1 cut(s) 253
BsgI GTGCAG 1 cut(s) 310
BshFI GGCC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 1573
BsiSI CCGG 2 cut(s) 589, 1042
BslFI GGGAC 2 cut(s) 143, 236
BslI CCNNNNNNNGG 1 cut(s) 417
BsmAI GTCTC 5 cut(s) 760, 861, 915, 1086, 1272
BsmBI CGTCTC 1 cut(s) 760
BsmFI GGGAC 2 cut(s) 143, 236
BsmI GAATGC 2 cut(s) 110, 1548
BsnI GGCC 1 cut(s) 182
Bso31I GGTCTC 2 cut(s) 861, 1272
Bsp119I TTCGAA 1 cut(s) 1512
Bsp1286I GDGCHC 2 cut(s) 400, 1421
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 4 cut(s) 676, 739, 904, 1435
BspACI CCGC 2 cut(s) 212, 611
BspANI GGCC 1 cut(s) 182
BspCNI CTCAG 7 cut(s) 85, 350, 505, 637, 688, 770, 1126
BspEI TCCGGA 1 cut(s) 588
BspHI TCATGA 4 cut(s) 1057, 1167, 1579, 1609
BspLI GGNNCC 8 cut(s) 678, 831, 1208, 1338, 1418, 1575, 1590, 1620
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 2 cut(s) 671, 684
BspT104I TTCGAA 1 cut(s) 1512
BspT107I GGYRCC 1 cut(s) 1573
BspTI CTTAAG 1 cut(s) 391
BspTNI GGTCTC 2 cut(s) 861, 1272
BsrDI GCAATG 1 cut(s) 1195
BsrI ACTGG 2 cut(s) 91, 607
BssECI CCNNGG 6 cut(s) 39, 198, 680, 1259, 1553, 1750
BssMI GATC 4 cut(s) 676, 739, 904, 1435
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 3 cut(s) 39, 198, 680
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 4 cut(s) 674, 834, 1143, 1554
Bst4CI ACNGT 3 cut(s) 146, 633, 1636
Bst6I CTCTTC 3 cut(s) 231, 296, 1335
BstAFI CTTAAG 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 1512
BstC8I GCNNGC 2 cut(s) 238, 1651
BstDEI CTNAG 7 cut(s) 72, 337, 492, 624, 696, 757, 1113
BstDSI CCRYGG 1 cut(s) 1750
BstF5I GGATG 2 cut(s) 1096, 1564
BstKTI GATC 4 cut(s) 679, 742, 907, 1438
BstMAI GTCTC 5 cut(s) 760, 861, 915, 1086, 1272
BstMBI GATC 4 cut(s) 676, 739, 904, 1435
BstMWI GCNNNNNNNGC 3 cut(s) 209, 773, 1646
BstNI CCWGG 4 cut(s) 674, 834, 1143, 1554
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 4 cut(s) 672, 832, 1141, 1552
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 4 cut(s) 367, 751, 787, 1663
BstV2I GAAGAC 2 cut(s) 300, 1321
BstX2I RGATCY 1 cut(s) 676
BstXI CCANNNNNNTGG 1 cut(s) 1737
BstYI RGATCY 1 cut(s) 676
BsuRI GGCC 1 cut(s) 182
BtgI CCRYGG 1 cut(s) 1750
BtgZI GCGATG 1 cut(s) 1191
BtsCI GGATG 2 cut(s) 1096, 1564
BtsI GCAGTG 1 cut(s) 1507
BtsIMutI CAGTG 3 cut(s) 927, 1507, 1536
Cac8I GCNNGC 2 cut(s) 238, 1651
CaiI CAGNNNCTG 2 cut(s) 764, 943
CciI TCATGA 4 cut(s) 1057, 1167, 1579, 1609
Cfr13I GGNCC 1 cut(s) 1520
CspCI CAANNNNNGTGG 2 cut(s) 1266, 1301
DdeI CTNAG 7 cut(s) 72, 337, 492, 624, 696, 757, 1113
DpnI GATC 4 cut(s) 678, 741, 906, 1437
DpnII GATC 4 cut(s) 676, 739, 904, 1435
DraIII CACNNNGTG 1 cut(s) 1457
EaeI YGGCCR 1 cut(s) 180
Eam1104I CTCTTC 3 cut(s) 231, 296, 1335
EarI CTCTTC 3 cut(s) 231, 296, 1335
Eco130I CCWWGG 3 cut(s) 39, 198, 680
Eco24I GRGCYC 2 cut(s) 400, 1421
Eco31I GGTCTC 2 cut(s) 861, 1272
Eco47I GGWCC 1 cut(s) 1520
Eco57I CTGAAG 2 cut(s) 312, 1316
EcoRI GAATTC 2 cut(s) 619, 1163
EcoRII CCWGG 4 cut(s) 672, 832, 1141, 1552
EcoT14I CCWWGG 3 cut(s) 39, 198, 680
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 2 cut(s) 400, 1421
ErhI CCWWGG 3 cut(s) 39, 198, 680
Esp3I CGTCTC 1 cut(s) 760
FaqI GGGAC 2 cut(s) 143, 236
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 3 cut(s) 739, 904, 1435
Fnu4HI GCNGC 4 cut(s) 381, 765, 801, 1677
FokI GGATG 2 cut(s) 1103, 1571
FriOI GRGCYC 2 cut(s) 400, 1421
Fsp4HI GCNGC 4 cut(s) 381, 765, 801, 1677
FspBI CTAG 6 cut(s) 564, 1224, 1254, 1373, 1377, 1778
GluI GCNGC 4 cut(s) 381, 765, 801, 1677
GsaI CCCAGC 1 cut(s) 257
GsuI CTGGAG 3 cut(s) 120, 396, 489
HaeIII GGCC 1 cut(s) 182
HapII CCGG 2 cut(s) 589, 1042
HincII GTYRAC 2 cut(s) 406, 976
HindII GTYRAC 2 cut(s) 406, 976
HindIII AAGCTT 1 cut(s) 1046
HpaII CCGG 2 cut(s) 589, 1042
HphI GGTGA 4 cut(s) 664, 914, 918, 972
Hpy166II GTNNAC 6 cut(s) 142, 406, 489, 976, 1288, 1324
Hpy8I GTNNAC 6 cut(s) 142, 406, 489, 976, 1288, 1324
HpyAV CCTTC 3 cut(s) 1508, 1751, 1760
HpyCH4III ACNGT 3 cut(s) 146, 633, 1636
HpyCH4IV ACGT 2 cut(s) 753, 1284
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 773, 1646
HpyF3I CTNAG 7 cut(s) 72, 337, 492, 624, 696, 757, 1113
HpySE526I ACGT 2 cut(s) 753, 1284
Kpn2I TCCGGA 1 cut(s) 588
Ksp22I TGATCA 3 cut(s) 739, 904, 1435
Kzo9I GATC 4 cut(s) 676, 739, 904, 1435
LmnI GCTCC 7 cut(s) 377, 470, 684, 835, 1032, 1416, 1477
Lsp1109I GCAGC 4 cut(s) 367, 751, 787, 1663
LweI GCATC 3 cut(s) 183, 926, 1549
MaeI CTAG 6 cut(s) 564, 1224, 1254, 1373, 1377, 1778
MaeII ACGT 2 cut(s) 753, 1284
MaeIII GTNAC 3 cut(s) 924, 985, 1145
MalI GATC 4 cut(s) 678, 741, 906, 1437
MboI GATC 4 cut(s) 676, 739, 904, 1435
MboII GAAGA 7 cut(s) 218, 305, 313, 1291, 1322, 1326, 1392
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 2 cut(s) 400, 1421
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 9 cut(s) 415, 546, 619, 655, 711, 853, 1017, 1163, 1196
MluNI TGGCCA 1 cut(s) 182
MlyI GAGTC 7 cut(s) 29, 401, 934, 959, 971, 1063, 1080
Mox20I TGGCCA 1 cut(s) 182
Mph1103I ATGCAT 1 cut(s) 544
MroI TCCGGA 1 cut(s) 588
MscI TGGCCA 1 cut(s) 182
MseI TTAA 5 cut(s) 392, 545, 1683, 1743, 1789
MslI CAYNNNNRTG 1 cut(s) 1062
Msp20I TGGCCA 1 cut(s) 182
MspCI CTTAAG 1 cut(s) 391
MspI CCGG 2 cut(s) 589, 1042
MspR9I CCNGG 4 cut(s) 674, 834, 1143, 1554
Mva1269I GAATGC 2 cut(s) 110, 1548
MvaI CCWGG 4 cut(s) 674, 834, 1143, 1554
MwoI GCNNNNNNNGC 3 cut(s) 209, 773, 1646
NdeI CATATG 1 cut(s) 559
NdeII GATC 4 cut(s) 676, 739, 904, 1435
NlaIV GGNNCC 8 cut(s) 678, 831, 1208, 1338, 1418, 1575, 1590, 1620
NmuCI GTSAC 1 cut(s) 924
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 240
NspV TTCGAA 1 cut(s) 1512
PaeI GCATGC 1 cut(s) 240
PagI TCATGA 4 cut(s) 1057, 1167, 1579, 1609
PctI GAATGC 2 cut(s) 110, 1548
PfeI GAWTC 5 cut(s) 341, 585, 932, 947, 1526
PkrI GCNGC 4 cut(s) 382, 766, 802, 1678
PleI GAGTC 7 cut(s) 29, 401, 934, 959, 971, 1062, 1079
PpsI GAGTC 7 cut(s) 29, 401, 934, 959, 971, 1062, 1079
PshBI ATTAAT 2 cut(s) 545, 1743
Psp6I CCWGG 4 cut(s) 672, 832, 1141, 1552
PspFI CCCAGC 1 cut(s) 253
PspGI CCWGG 4 cut(s) 672, 832, 1141, 1552
PspN4I GGNNCC 8 cut(s) 678, 831, 1208, 1338, 1418, 1575, 1590, 1620
PspPI GGNCC 1 cut(s) 1520
PstI CTGCAG 1 cut(s) 805
PstNI CAGNNNCTG 2 cut(s) 764, 943
PsuI RGATCY 1 cut(s) 676
RseI CAYNNNNRTG 1 cut(s) 1062
SaqAI TTAA 5 cut(s) 392, 545, 1683, 1743, 1789
SatI GCNGC 4 cut(s) 381, 765, 801, 1677
Sau3AI GATC 4 cut(s) 676, 739, 904, 1435
Sau96I GGNCC 1 cut(s) 1520
SchI GAGTC 7 cut(s) 29, 401, 934, 959, 971, 1063, 1080
ScrFI CCNGG 4 cut(s) 674, 834, 1143, 1554
SduI GDGCHC 2 cut(s) 400, 1421
SfaNI GCATC 3 cut(s) 183, 926, 1549
SfcI CTRYAG 1 cut(s) 801
SfuI TTCGAA 1 cut(s) 1512
SinI GGWCC 1 cut(s) 1520
SmiMI CAYNNNNRTG 1 cut(s) 1062
SmlI CTYRAG 4 cut(s) 63, 357, 391, 1085
SmoI CTYRAG 4 cut(s) 63, 357, 391, 1085
SpeI ACTAGT 1 cut(s) 1253
SphI GCATGC 1 cut(s) 240
Sse9I AATT 9 cut(s) 415, 546, 619, 655, 711, 853, 1017, 1163, 1196
SsiI CCGC 2 cut(s) 212, 611
SspMI CTAG 6 cut(s) 564, 1224, 1254, 1373, 1377, 1778
StyD4I CCNGG 4 cut(s) 672, 832, 1141, 1552
StyI CCWWGG 3 cut(s) 39, 198, 680
TaaI ACNGT 3 cut(s) 146, 633, 1636
TaiI ACGT 2 cut(s) 756, 1287
TaqI TCGA 5 cut(s) 206, 265, 1074, 1512, 1669
TasI AATT 9 cut(s) 415, 546, 619, 655, 711, 853, 1017, 1163, 1196
TfiI GAWTC 5 cut(s) 341, 585, 932, 947, 1526
Tru1I TTAA 5 cut(s) 392, 545, 1683, 1743, 1789
Tru9I TTAA 5 cut(s) 392, 545, 1683, 1743, 1789
TscAI CASTG 3 cut(s) 927, 1507, 1536
TseFI GTSAC 1 cut(s) 924
TseI GCWGC 4 cut(s) 380, 764, 800, 1676
Tsp45I GTSAC 1 cut(s) 924
TspRI CASTG 3 cut(s) 927, 1507, 1536
Vha464I CTTAAG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 1520
VspI ATTAAT 2 cut(s) 545, 1743
XapI RAATTY 5 cut(s) 619, 655, 853, 1163, 1196
XceI RCATGY 1 cut(s) 240
XspI CTAG 6 cut(s) 564, 1224, 1254, 1373, 1377, 1778
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.