FvH4_1g28060

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
19901181 .. 19904181
3001 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28060.t2

Sequence Viewer

Length: 1812 bp
ATGGGTAGAAATTTAGCCCCAGTAGTACAGAGAGAATTGGAAAATCTTCAGAAAGATGCTGATAGTCGTAGATCAGCAATGAAAGCACTCAAGTCGTATGTGAAAGATTTGGACTCCAAGGCAATCCCTGTGTTTCTTGCCCAAGTTTCCCAGTCTAAAGAAACTGGTCCTTTGAATGGGGAATGCACCATTTCGCTCTATGAAGTTCTTGCTCGTGTTCATGGCGTCAAAATCGTCCCTCTCATAAGCAACATCATGGAAACCATAATCAAGACTCTAGCTTCGAGTGCAGGGTCTTTCCCTCTTCAACAAGCATGCTCAAAAGTGGTTCCGGCCATCGCTAGATATGGGATTGATCCTACCACCCCTGAAGACAAGAAGAGGCATATTATTCATTCACTATGTAATCCCCTCGCAGATTCCCTCTTGGGTTCTCAAGAGAGCTTGACTTCTGGAGCTGCCCTTTGCTTAAAGGCTCTTGTGGACTCAGATAATTGGCGTTTTGCTTCAGATGAGATGGTTAATAAGGTTTGTCAGAATGTTTCTGGCGCTTTGGAGGAGAAATCTACTCAGTCAAATGCACACATGGGTCTGGTCATGTCTCTTGCAAAGCGCAATGCTATAATAGTTGAACCATATGCTAGGTTGTTGATACATGCTGGACTGCAGATATTGAACAATGGTTTAATAGAGGGGAATTCTCAGAAACGTTTGGAAGCTATTCAAATGGTGAACTTCTTGATGAAATGCTTAGACCCTTGGAGCATTTTATCTGAGCTTGAGTTGGTAATTGAAGAAATGAACAAGAGTCAGTCAGATCAGATGGCTTACGTAGCAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGGATAGCTGCAGATAAAGGCCCAAAACTTGAAAAGGCTCATTCAGTCAGTGGCTCAAACTTTAGTAGGAGGCGGAATTTATCTAGTGCTGGTGATCAGTCCCCTGCATCAGTGTCACCTGAGTCACAGACCCTGGATTCCTTCATAGGATATGATTCATGGGTTGATTCACCTATTGCAGCGGGGCAGGTTTCTCACATCTCAAATTATGATTGTAGGAGTGTCAATCGGAAACTTTGGAGTCATGAGCGTGGAGGAGTTGATGTGTCTCTCAAGGATGGTTTGTTCTCAGGGATTTCTAGCGAAAATGGCTACTCTAATGCACCTTCAGACTTGGGGAATAATCAGTTCATGAACAGCAAAGTTGAATGCACAGAAGAATTTTCAGGTTTCTTTCAAAGAAATTCAAGTAATAGAGTATCAAGAAGTGCCACAACCAGTCCCCTGAGGTCACGAACTCCAATTGCTGTTGATAATATCATCTTCAAAACTCCGAGGAGGCTCGTTCATTCTCTTCAAGATCCAAATAATGTCAACTCAGACATCTCTGAGAAACTAACTAGAGGATTTAGGAGTTTAGCCTTGAGTGAAGATTGCAGCCCAAATGGCAGGTACAAACAAAATGTTCACTCACATGGTGCGACTTATGATTGCAATGGTAGCTTTTGTGATGGTGGTTATGAGCAGTTCCAATGTGGCCCTGCTGAATCTGTATCATCAACAGATGGTATACCTGAAGAAGGTGACTTGCACGTTTTTCAAGATGTCGTTCCTAAAATAGAATCAGAAATTCAAGATTCTAGCATCAGAAAACCCCTTCGCAATGTTGCCATAAAATTGTTCTGTGGCCTTTCTTTTGCAGTACTTGCAGTAGTTGTTCCGTTAGCTTTGATTACAAATCAAGGTCCAGGTTATGAAAGTTATCATCTTGTCCCAACTTAG

Protein Analysis

604

Amino Acids

65.7

Weight (kDa)

6.26

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOR1L1_N PF24714 18 - 209 1.1e-16 TORTIFOLIA1 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1048, 1470
AccI GTMKAC 1 cut(s) 1600
AciI CCGC 2 cut(s) 943, 1052
AclI AACGTT 1 cut(s) 709
AclWI GGATC 2 cut(s) 350, 1385
AcoI YGGCCR 1 cut(s) 333
AcsI RAATTY 6 cut(s) 10, 697, 946, 1250, 1273, 1659
AcuI CTGAAG 5 cut(s) 32, 390, 492, 1182, 1626
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 1508
AfaI GTAC 3 cut(s) 27, 1484, 1734
AfiI CCNNNNNNNGG 2 cut(s) 176, 1610
AjnI CCWGG 2 cut(s) 1002, 1777
AloI GAACNNNNNNTCC 2 cut(s) 1139, 1171
AluBI AGCT 9 cut(s) 281, 444, 458, 719, 778, 854, 878, 1533, 1757
AluI AGCT 9 cut(s) 281, 444, 458, 719, 778, 854, 878, 1533, 1757
Alw26I GTCTC 2 cut(s) 606, 1143
AlwI GGATC 2 cut(s) 350, 1385
AlwNI CAGNNNCTG 2 cut(s) 842, 1003
AoxI GGCC 4 cut(s) 333, 889, 1567, 1717
ApeKI GCWGC 5 cut(s) 458, 842, 878, 1049, 1467
ApoI RAATTY 6 cut(s) 10, 697, 946, 1250, 1273, 1659
ArsI GACNNNNNNTTYG 2 cut(s) 265, 297
Asp700I GAANNNNTTC 2 cut(s) 45, 720
AspLEI GCGC 2 cut(s) 551, 615
AspS9I GGNCC 4 cut(s) 167, 890, 1568, 1775
AsuHPI GGTGA 5 cut(s) 742, 974, 978, 1032, 1625
AvaII GGWCC 2 cut(s) 167, 1775
AxyI CCTNAGG 1 cut(s) 1316
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 5 cut(s) 445, 829, 865, 1061, 1479
BccI CCATC 6 cut(s) 344, 511, 817, 1142, 1535, 1589
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 1004, 1779
BclI TGATCA 1 cut(s) 964
BcoDI GTCTC 2 cut(s) 606, 1143
BfaI CTAG 7 cut(s) 278, 342, 642, 954, 1170, 1431, 1671
BfmI CTRYAG 2 cut(s) 665, 879
BfoI RGCGCY 1 cut(s) 552
BfuAI ACCTGC 2 cut(s) 1048, 1470
BglI GCCNNNNNGGC 1 cut(s) 1476
BisI GCNGC 5 cut(s) 459, 843, 879, 1050, 1468
BlsI GCNGC 5 cut(s) 460, 844, 880, 1051, 1469
BmcAI AGTACT 1 cut(s) 1734
Bme1390I CCNGG 2 cut(s) 1004, 1779
Bme18I GGWCC 2 cut(s) 167, 1775
BmgT120I GGNCC 4 cut(s) 167, 890, 1568, 1775
BmiI GGNNCC 1 cut(s) 330
BmrFI CCNGG 2 cut(s) 1004, 1779
BmrI ACTGGG 2 cut(s) 14, 145
BmsI GCATC 3 cut(s) 46, 986, 1683
BmuI ACTGGG 2 cut(s) 14, 145
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 5 cut(s) 74, 420, 800, 1127, 1474
BsaAI YACGTR 1 cut(s) 832
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 117, 758, 1002, 1364
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 2 cut(s) 176, 1610
Bse1I ACTGG 4 cut(s) 20, 151, 169, 1308
Bse21I CCTNAGG 1 cut(s) 1316
Bse3DI GCAATG 4 cut(s) 84, 622, 1531, 1699
BseBI CCWGG 2 cut(s) 1004, 1779
BseDI CCNNGG 4 cut(s) 117, 758, 1002, 1364
BseGI GGATG 1 cut(s) 1153
BseLI CCNNNNNNNGG 2 cut(s) 176, 1610
BseMI GCAATG 4 cut(s) 84, 622, 1531, 1699
BseMII CTCAG 9 cut(s) 501, 584, 716, 765, 981, 1173, 1307, 1410, 1422
BseNI ACTGG 4 cut(s) 20, 151, 169, 1308
BseRI GAGGAG 3 cut(s) 572, 1140, 1381
BseXI GCAGC 5 cut(s) 445, 829, 865, 1061, 1479
BsgI GTGCAG 1 cut(s) 309
BshFI GGCC 4 cut(s) 335, 891, 1569, 1719
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 4 cut(s) 221, 955, 1296, 1787
BslI CCNNNNNNNGG 2 cut(s) 176, 1610
BsmAI GTCTC 2 cut(s) 606, 1143
BsmFI GGGAC 4 cut(s) 221, 955, 1296, 1787
BsmI GAATGC 2 cut(s) 188, 1244
BsnI GGCC 4 cut(s) 335, 891, 1569, 1719
Bsp143I GATC 5 cut(s) 71, 355, 817, 964, 1390
BspACI CCGC 2 cut(s) 943, 1052
BspANI GGCC 4 cut(s) 335, 891, 1569, 1719
BspCNI CTCAG 9 cut(s) 500, 583, 715, 766, 982, 1172, 1308, 1411, 1421
BspHI TCATGA 2 cut(s) 1114, 1221
BspLI GGNNCC 1 cut(s) 330
BspMAI CTGCAG 2 cut(s) 669, 883
BspMI ACCTGC 2 cut(s) 1048, 1470
BspPI GGATC 2 cut(s) 350, 1385
BsrDI GCAATG 4 cut(s) 84, 622, 1531, 1699
BsrI ACTGG 4 cut(s) 20, 151, 169, 1308
BssECI CCNNGG 4 cut(s) 117, 758, 1002, 1364
BssMI GATC 5 cut(s) 71, 355, 817, 964, 1390
BssNAI GTATAC 1 cut(s) 1601
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 2 cut(s) 117, 758
Bst1107I GTATAC 1 cut(s) 1601
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 1004, 1779
Bst6I CTCTTC 3 cut(s) 309, 374, 1389
BstACI GRCGYC 1 cut(s) 225
BstAPI GCANNNNNTGC 2 cut(s) 842, 1736
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 1 cut(s) 316
BstENI CCTNNNNNAGG 1 cut(s) 1608
BstF5I GGATG 1 cut(s) 1153
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 2 cut(s) 551, 615
BstKTI GATC 5 cut(s) 74, 358, 820, 967, 1393
BstMAI GTCTC 2 cut(s) 606, 1143
BstMBI GATC 5 cut(s) 71, 355, 817, 964, 1390
BstMWI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1179, 1476, 1530, 1736
BstNI CCWGG 2 cut(s) 1004, 1779
BstNSI RCATGY 2 cut(s) 318, 659
BstSCI CCNGG 2 cut(s) 1002, 1777
BstSFI CTRYAG 2 cut(s) 665, 879
BstSNI TACGTA 1 cut(s) 832
BstV1I GCAGC 5 cut(s) 445, 829, 865, 1061, 1479
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 1390
BstYI RGATCY 1 cut(s) 1390
BstZ17I GTATAC 1 cut(s) 1601
Bsu36I CCTNAGG 1 cut(s) 1316
BsuRI GGCC 4 cut(s) 335, 891, 1569, 1719
BtgZI GCGATG 1 cut(s) 322
BtsCI GGATG 1 cut(s) 1153
BtsIMutI CAGTG 2 cut(s) 925, 987
BveI ACCTGC 2 cut(s) 1048, 1470
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 2 cut(s) 842, 1003
CciI TCATGA 2 cut(s) 1114, 1221
CfoI GCGC 2 cut(s) 551, 615
Cfr13I GGNCC 4 cut(s) 167, 890, 1568, 1775
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 26, 1483, 1733
CviQI GTAC 3 cut(s) 26, 1483, 1733
DpnI GATC 5 cut(s) 73, 357, 819, 966, 1392
DpnII GATC 5 cut(s) 71, 355, 817, 964, 1390
DraIII CACNNNGTG 1 cut(s) 1508
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 3 cut(s) 309, 374, 1389
EarI CTCTTC 3 cut(s) 309, 374, 1389
EciI GGCGGA 1 cut(s) 958
Eco105I TACGTA 1 cut(s) 832
Eco130I CCWWGG 2 cut(s) 117, 758
Eco47I GGWCC 2 cut(s) 167, 1775
Eco57I CTGAAG 5 cut(s) 32, 390, 492, 1182, 1626
Eco81I CCTNAGG 1 cut(s) 1316
EcoNI CCTNNNNNAGG 1 cut(s) 1608
EcoRI GAATTC 1 cut(s) 697
EcoRII CCWGG 2 cut(s) 1002, 1777
EcoT14I CCWWGG 2 cut(s) 117, 758
ErhI CCWWGG 2 cut(s) 117, 758
FaqI GGGAC 4 cut(s) 221, 955, 1296, 1787
FauI CCCGC 1 cut(s) 1045
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 1 cut(s) 964
FblI GTMKAC 1 cut(s) 1600
Fnu4HI GCNGC 5 cut(s) 459, 843, 879, 1050, 1468
FokI GGATG 1 cut(s) 1160
Fsp4HI GCNGC 5 cut(s) 459, 843, 879, 1050, 1468
FspBI CTAG 7 cut(s) 278, 342, 642, 954, 1170, 1431, 1671
GlaI GCGC 2 cut(s) 550, 614
GluI GCNGC 5 cut(s) 459, 843, 879, 1050, 1468
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 4 cut(s) 335, 891, 1569, 1719
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 214
HhaI GCGC 2 cut(s) 551, 615
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 2 cut(s) 549, 613
HinP1I GCGC 2 cut(s) 549, 613
HincII GTYRAC 1 cut(s) 1405
HindII GTYRAC 1 cut(s) 1405
HpaII CCGG 1 cut(s) 332
HphI GGTGA 5 cut(s) 742, 974, 978, 1032, 1625
Hpy166II GTNNAC 5 cut(s) 484, 733, 1405, 1498, 1601
Hpy8I GTNNAC 5 cut(s) 484, 733, 1405, 1498, 1601
HpyAV CCTTC 4 cut(s) 1021, 1206, 1604, 1697
HpyCH4IV ACGT 3 cut(s) 709, 831, 1623
HpyF10VI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1179, 1476, 1530, 1736
HpySE526I ACGT 3 cut(s) 709, 831, 1623
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 2 cut(s) 549, 613
Ksp22I TGATCA 1 cut(s) 964
Kzo9I GATC 5 cut(s) 71, 355, 817, 964, 1390
LmnI GCTCC 2 cut(s) 455, 762
Lsp1109I GCAGC 5 cut(s) 445, 829, 865, 1061, 1479
LweI GCATC 3 cut(s) 46, 986, 1683
MaeI CTAG 7 cut(s) 278, 342, 642, 954, 1170, 1431, 1671
MaeII ACGT 3 cut(s) 709, 831, 1623
MaeIII GTNAC 4 cut(s) 984, 993, 1320, 1613
MalI GATC 5 cut(s) 73, 357, 819, 966, 1392
MboI GATC 5 cut(s) 71, 355, 817, 964, 1390
MfeI CAATTG 1 cut(s) 1332
MflI RGATCY 1 cut(s) 1390
MlyI GAGTC 6 cut(s) 107, 268, 479, 817, 1001, 1120
MroXI GAANNNNTTC 2 cut(s) 45, 720
MseI TTAA 3 cut(s) 470, 522, 686
MslI CAYNNNNRTG 2 cut(s) 1119, 1503
MspA1I CMGCKG 1 cut(s) 1052
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 2 cut(s) 1004, 1779
MunI CAATTG 1 cut(s) 1332
Mva1269I GAATGC 2 cut(s) 188, 1244
MvaI CCWGG 2 cut(s) 1004, 1779
MwoI GCNNNNNNNGC 9 cut(s) 83, 287, 833, 842, 851, 1179, 1476, 1530, 1736
NdeI CATATG 1 cut(s) 637
NdeII GATC 5 cut(s) 71, 355, 817, 964, 1390
NlaIV GGNNCC 1 cut(s) 330
NmuCI GTSAC 4 cut(s) 984, 993, 1320, 1613
NspI RCATGY 2 cut(s) 318, 659
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 2 cut(s) 1114, 1221
PctI GAATGC 2 cut(s) 188, 1244
PdmI GAANNNNTTC 2 cut(s) 45, 720
PfeI GAWTC 7 cut(s) 419, 1007, 1025, 1037, 1577, 1652, 1667
PkrI GCNGC 5 cut(s) 460, 844, 880, 1051, 1469
PleI GAGTC 6 cut(s) 107, 268, 479, 816, 1000, 1119
PpsI GAGTC 6 cut(s) 107, 268, 479, 816, 1000, 1119
Ppu21I YACGTR 1 cut(s) 832
Psp1406I AACGTT 1 cut(s) 709
Psp6I CCWGG 2 cut(s) 1002, 1777
PspGI CCWGG 2 cut(s) 1002, 1777
PspN4I GGNNCC 1 cut(s) 330
PspPI GGNCC 4 cut(s) 167, 890, 1568, 1775
PstI CTGCAG 2 cut(s) 669, 883
PstNI CAGNNNCTG 2 cut(s) 842, 1003
PsuI RGATCY 1 cut(s) 1390
RsaI GTAC 3 cut(s) 27, 1484, 1734
RsaNI GTAC 3 cut(s) 26, 1483, 1733
RseI CAYNNNNRTG 2 cut(s) 1119, 1503
SaqAI TTAA 3 cut(s) 470, 522, 686
SatI GCNGC 5 cut(s) 459, 843, 879, 1050, 1468
Sau3AI GATC 5 cut(s) 71, 355, 817, 964, 1390
Sau96I GGNCC 4 cut(s) 167, 890, 1568, 1775
ScaI AGTACT 1 cut(s) 1734
SchI GAGTC 6 cut(s) 107, 268, 479, 817, 1001, 1120
ScrFI CCNGG 2 cut(s) 1004, 1779
SfaNI GCATC 3 cut(s) 46, 986, 1683
SfcI CTRYAG 2 cut(s) 665, 879
SinI GGWCC 2 cut(s) 167, 1775
SmiMI CAYNNNNRTG 2 cut(s) 1119, 1503
SmlI CTYRAG 5 cut(s) 89, 435, 779, 1142, 1453
SmoI CTYRAG 5 cut(s) 89, 435, 779, 1142, 1453
SnaBI TACGTA 1 cut(s) 832
SphI GCATGC 1 cut(s) 318
SsiI CCGC 2 cut(s) 943, 1052
SspMI CTAG 7 cut(s) 278, 342, 642, 954, 1170, 1431, 1671
StyD4I CCNGG 2 cut(s) 1002, 1777
StyI CCWWGG 2 cut(s) 117, 758
TaiI ACGT 3 cut(s) 712, 834, 1626
TaqI TCGA 1 cut(s) 284
TatI WGTACW 2 cut(s) 25, 1732
TfiI GAWTC 7 cut(s) 419, 1007, 1025, 1037, 1577, 1652, 1667
Tru1I TTAA 3 cut(s) 470, 522, 686
Tru9I TTAA 3 cut(s) 470, 522, 686
TscAI CASTG 2 cut(s) 925, 987
TseFI GTSAC 4 cut(s) 984, 993, 1320, 1613
TseI GCWGC 5 cut(s) 458, 842, 878, 1049, 1467
Tsp45I GTSAC 4 cut(s) 984, 993, 1320, 1613
TspGWI ACGGA 1 cut(s) 1740
TspRI CASTG 2 cut(s) 925, 987
VpaK11BI GGWCC 2 cut(s) 167, 1775
XagI CCTNNNNNAGG 1 cut(s) 1608
XapI RAATTY 6 cut(s) 10, 697, 946, 1250, 1273, 1659
XceI RCATGY 2 cut(s) 318, 659
XmiI GTMKAC 1 cut(s) 1600
XmnI GAANNNNTTC 2 cut(s) 45, 720
XspI CTAG 7 cut(s) 278, 342, 642, 954, 1170, 1431, 1671
ZrmI AGTACT 1 cut(s) 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.