Prupe.7G003500_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
394153 .. 397827
3675 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G003500.2

Sequence Viewer

Length: 1836 bp
ATGGGGAGGAGTTTAAGCCCAATACTAAGGCGTGAATTGGAAAATCTTGATAAAGATGCTGATAGTCGTAGATCAGCAATGAAAGCACTGAAATCCTATGTGAAAGAATTGGATTCCAAGGCAATCCCAATGTTTCTTGCCCAAGTTTCTCAAACTAAAGAAACTGGTTCTTTGTCGGGAGAATGCACTATTTCACTATATGAAGTTCTTGCTCGTGTTCATGGTGTCAAGATAGTACCTCTGATAAACAGCATCATGGCCACCATAATCAAGACCTTGGCTTCAAGTGCAGGGTCTTTCCCTCTTCAACAAGCCTGCTCAAAGGTGGTCCCAGCTATTGCTAGATATGGGATTGACCCAACCACCCCTGAAGACAAGAAAAGGAACATTATTCATTCACTCTGCAATCCTCTGTCGGATTCTCTCTTGGGTTCTCAAGAGAGCTTGACTTCTGGAGCTGCACTTTGCTTAAAGGCTCTTATTGATTCGGATAATTGGCGTTTTGCTGCAGATGAGATGGTTAATAGGGTATGCCAGAATGTTTCTGGTGCTTTGGAGGAGAAGTCCACTCAGACAAATGCACACATGGGTCTGGTTATGGCTCTTGCAAAACGTAATGCTACAATTGTTGAACCATATGCTAGGTTGTTGATACAAGCAGGACTGCGGATATTGAATGCTGGTGTAGTGGAAGGGAATTCTCAGAAGCGGTTGTCAGCTATTCAAATGGTGAATTTCTTGATGAGATGCTTAGATCCTTGGAGCATTCTCTCTGAGCTTGAGTTGATAATTGAAGAAATGGAGAAGTGTCAATCTGATCAGATGGCTTATGTTAAAGGGGCTGCCTTTGAAGCTCTGCAAACTGCAAGGAGAATAGGCGCAGATAAAGGCTCAAAACTTGAAAAAGGTCCTGGTTCTGTCTGTGGGTCAAATTTTATTAGGAGAGGCCACAGCAGGAGGAGAAACCTATCAAGTGCTGGTGATCAATCTCCTGCATCAACGTCACCCGAGTCACAGACCCTTGATTCCTTTGTTGAATATGAATCATTGGTTGAGTCACCTATTTCAATGAGTCAGGCTTCTCAAAATTCAATTTATGATTGTAGGAGTGTAAACCGGAAGCTTTGGAGTCGTGAGAATGGAGTAGTTGATGTGTCTCTCAAGGATGGCTTGTTCTCAGAAATTGCTCGGGGTAGTGCGTACTCGAATGGATATCCAGAGAACTCTGGGAATAATGAATTCATCAAATGCGAAGGAGATTGCACAGAGGAATTTGCAGGGTTCCTGCAAAGAAATCCTAGGAATGGAGCATCAAGAAGCACCACAACCAGTCCTCTGAGGTCACACACTCCCATCAATGTTGACAACATCATCTTCAACACTCCGAGGAGGCTTTTTCACTCTCTTCAGGATCCAAGTAATGTCTACTCTAAGTCCTCTGAGAAACGAGCTAGAAGATTTAGAAGTTTATCCATGAGCGAATTTGATTGGAGCCCAAATGCCAGATACGACCAAGAAGGCTATTCACATGGTGTGAACTATGAATGCAGAGAGAATGGGAGCTTCTATGCTGGTGATGAGCAGTTTCAAGGTGGCCCTGAATCGGTATCATCAACAGATGGCATTCCCGTGGATGCTGATTTGCAGGCGTCTCAGGAGGTTGTTCCAGAAAATGAAACAGAAGTTCCAATCTCTGGCATAAAAAGTGCCCGTCGAAAGGTTGCTGTGAAATTGTTGTGTGGACTTTCGTTCGCACTACTTGCAGTAGCTATGCCACTACTGTGGATTAATGATCAAGGTGAAGGGCATGAAGGTTATTATCTTGTTCCAACTTAA

Protein Analysis

612

Amino Acids

67.02

Weight (kDa)

6.17

Isoelectric Point (pI)

56.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1694
AccI GTMKAC 1 cut(s) 1425
AciI CCGC 2 cut(s) 667, 709
AclWI GGATC 3 cut(s) 749, 1406, 1419
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 7 cut(s) 697, 733, 931, 1087, 1238, 1271, 1481
AcuI CTGAAG 2 cut(s) 390, 1391
AcyI GRCGYC 1 cut(s) 1649
AdeI CACNNNGTG 1 cut(s) 1532
AfaI GTAC 2 cut(s) 237, 1202
AfiI CCNNNNNNNGG 4 cut(s) 1304, 1603, 1694, 1717
AjnI CCWGG 1 cut(s) 910
AleI CACNNNNGTG 1 cut(s) 1780
AloI GAACNNNNNNTCC 2 cut(s) 1157, 1189
Alw26I GTCTC 2 cut(s) 1161, 1656
AlwI GGATC 3 cut(s) 749, 1406, 1419
Ama87I CYCGRG 2 cut(s) 1007, 1188
AoxI GGCC 3 cut(s) 258, 946, 1594
ApeKI GCWGC 3 cut(s) 458, 506, 842
ApoI RAATTY 7 cut(s) 697, 733, 931, 1087, 1238, 1271, 1481
AseI ATTAAT 1 cut(s) 1788
AspA2I CCTAGG 1 cut(s) 1298
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 3 cut(s) 328, 908, 1595
AsuHPI GGTGA 6 cut(s) 742, 992, 996, 1050, 1586, 1811
AvaI CYCGRG 2 cut(s) 1007, 1188
AvaII GGWCC 2 cut(s) 328, 908
AvrII CCTAGG 1 cut(s) 1298
BaeGI GKGCMC 1 cut(s) 1711
BalI TGGCCA 1 cut(s) 260
BamHI GGATCC 1 cut(s) 1411
BanII GRGCYC 1 cut(s) 1496
BauI CACGAG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 3 cut(s) 445, 493, 829
BccI CCATC 5 cut(s) 511, 817, 1160, 1361, 1613
BciT130I CCWGG 1 cut(s) 912
BclI TGATCA 3 cut(s) 817, 982, 1792
BcoDI GTCTC 2 cut(s) 1161, 1656
BfaI CTAG 4 cut(s) 342, 642, 1299, 1452
BfmI CTRYAG 1 cut(s) 507
BisI GCNGC 3 cut(s) 459, 507, 843
BlnI CCTAGG 1 cut(s) 1298
BlsI GCNGC 3 cut(s) 460, 508, 844
Bme1390I CCNGG 1 cut(s) 912
Bme18I GGWCC 2 cut(s) 328, 908
BmeT110I CYCGRG 2 cut(s) 1007, 1188
BmgT120I GGNCC 3 cut(s) 328, 908, 1595
BmiI GGNNCC 4 cut(s) 330, 1283, 1413, 1493
BmrFI CCNGG 1 cut(s) 912
BmsI GCATC 6 cut(s) 46, 261, 737, 1004, 1319, 1624
BpiI GAAGAC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 3 cut(s) 420, 800, 1145
BsaHI GRCGYC 1 cut(s) 1649
BsaJI CCNNGG 6 cut(s) 117, 276, 758, 1298, 1385, 1629
BsaWI WCCGGW 1 cut(s) 1116
BsaXI ACNNNNNCTCC 2 cut(s) 548, 578
Bsc4I CCNNNNNNNGG 4 cut(s) 1304, 1603, 1694, 1717
Bse1I ACTGG 2 cut(s) 169, 1329
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 912
BseDI CCNNGG 6 cut(s) 117, 276, 758, 1298, 1385, 1629
BseGI GGATG 2 cut(s) 1171, 1639
BseLI CCNNNNNNNGG 4 cut(s) 1304, 1603, 1694, 1717
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 7 cut(s) 584, 716, 765, 1191, 1328, 1431, 1667
BseNI ACTGG 2 cut(s) 169, 1329
BseRI GAGGAG 4 cut(s) 22, 572, 973, 1402
BseSI GKGCMC 1 cut(s) 1711
BseXI GCAGC 3 cut(s) 445, 493, 829
BseYI CCCAGC 1 cut(s) 331
BsgI GTGCAG 2 cut(s) 309, 444
BshFI GGCC 3 cut(s) 260, 948, 1596
BsiHKCI CYCGRG 2 cut(s) 1007, 1188
BsiSI CCGG 1 cut(s) 1117
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 4 cut(s) 1304, 1603, 1694, 1717
BsmAI GTCTC 2 cut(s) 1161, 1656
BsmBI CGTCTC 1 cut(s) 1656
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 5 cut(s) 188, 682, 765, 1550, 1623
BsnI GGCC 3 cut(s) 260, 948, 1596
BsoBI CYCGRG 2 cut(s) 1007, 1188
Bsp1286I GDGCHC 2 cut(s) 1496, 1711
Bsp143I GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
BspACI CCGC 2 cut(s) 667, 709
BspANI GGCC 3 cut(s) 260, 948, 1596
BspCNI CTCAG 7 cut(s) 583, 715, 766, 1190, 1329, 1432, 1666
BspLI GGNNCC 4 cut(s) 330, 1283, 1413, 1493
BspMAI CTGCAG 1 cut(s) 511
BspPI GGATC 3 cut(s) 749, 1406, 1419
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 169, 1329
BssECI CCNNGG 6 cut(s) 117, 276, 758, 1298, 1385, 1629
BssMI GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
BssNI GRCGYC 1 cut(s) 1649
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 4 cut(s) 117, 276, 758, 1298
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 912
Bst4CI ACNGT 1 cut(s) 1782
Bst6I CTCTTC 2 cut(s) 309, 1410
BstACI GRCGYC 1 cut(s) 1649
BstAPI GCANNNNNTGC 1 cut(s) 1760
BstC8I GCNNGC 2 cut(s) 316, 1647
BstDSI CCRYGG 1 cut(s) 1629
BstF5I GGATG 2 cut(s) 1171, 1639
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 6 cut(s) 74, 757, 820, 985, 1414, 1795
BstMAI GTCTC 2 cut(s) 1161, 1656
BstMBI GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
BstMWI GCNNNNNNNGC 4 cut(s) 83, 287, 851, 1760
BstNI CCWGG 1 cut(s) 912
BstSCI CCNGG 1 cut(s) 910
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 1711
BstV1I GCAGC 3 cut(s) 445, 493, 829
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 2 cut(s) 754, 1411
BstXI CCANNNNNNTGG 1 cut(s) 1782
BstYI RGATCY 2 cut(s) 754, 1411
BsuRI GGCC 3 cut(s) 260, 948, 1596
BtgI CCRYGG 1 cut(s) 1629
BtsCI GGATG 2 cut(s) 1171, 1639
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 2 cut(s) 316, 1647
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 328, 908, 1595
CseI GACGC 1 cut(s) 1638
Csp6I GTAC 2 cut(s) 236, 1201
CviAII CATG 6 cut(s) 221, 256, 586, 1474, 1529, 1808
CviQI GTAC 2 cut(s) 236, 1201
DpnI GATC 6 cut(s) 73, 756, 819, 984, 1413, 1794
DpnII GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
DraIII CACNNNGTG 1 cut(s) 1532
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 309, 1410
EarI CTCTTC 2 cut(s) 309, 1410
Eco130I CCWWGG 4 cut(s) 117, 276, 758, 1298
Eco24I GRGCYC 1 cut(s) 1496
Eco32I GATATC 1 cut(s) 1214
Eco47I GGWCC 2 cut(s) 328, 908
Eco57I CTGAAG 2 cut(s) 390, 1391
Eco88I CYCGRG 2 cut(s) 1007, 1188
EcoO109I RGGNCCY 1 cut(s) 908
EcoRI GAATTC 2 cut(s) 697, 1238
EcoRII CCWGG 1 cut(s) 910
EcoRV GATATC 1 cut(s) 1214
EcoT14I CCWWGG 4 cut(s) 117, 276, 758, 1298
EcoT38I GRGCYC 1 cut(s) 1496
ErhI CCWWGG 4 cut(s) 117, 276, 758, 1298
Esp3I CGTCTC 1 cut(s) 1656
FaeI CATG 6 cut(s) 224, 259, 589, 1477, 1532, 1811
FalI AAGNNNNNCTT 2 cut(s) 1154, 1186
FaqI GGGAC 1 cut(s) 314
FatI CATG 6 cut(s) 220, 255, 585, 1473, 1528, 1807
FauNDI CATATG 1 cut(s) 637
FbaI TGATCA 3 cut(s) 817, 982, 1792
FblI GTMKAC 1 cut(s) 1425
Fnu4HI GCNGC 3 cut(s) 459, 507, 843
FokI GGATG 2 cut(s) 1178, 1646
FriOI GRGCYC 1 cut(s) 1496
Fsp4HI GCNGC 3 cut(s) 459, 507, 843
FspBI CTAG 4 cut(s) 342, 642, 1299, 1452
GlaI GCGC 1 cut(s) 880
GluI GCNGC 3 cut(s) 459, 507, 843
GsaI CCCAGC 1 cut(s) 335
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 3 cut(s) 260, 948, 1596
HapII CCGG 1 cut(s) 1117
HgaI GACGC 1 cut(s) 1638
HhaI GCGC 1 cut(s) 881
Hin1I GRCGYC 1 cut(s) 1649
Hin1II CATG 6 cut(s) 224, 259, 589, 1477, 1532, 1811
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 1 cut(s) 1363
HindII GTYRAC 1 cut(s) 1363
HindIII AAGCTT 1 cut(s) 1121
HpaII CCGG 1 cut(s) 1117
HphI GGTGA 6 cut(s) 742, 992, 996, 1050, 1586, 1811
Hpy166II GTNNAC 6 cut(s) 567, 1114, 1363, 1426, 1537, 1742
Hpy8I GTNNAC 6 cut(s) 567, 1114, 1363, 1426, 1537, 1742
Hpy99I CGWCG 1 cut(s) 1716
HpyAV CCTTC 5 cut(s) 686, 1247, 1511, 1796, 1805
HpyCH4III ACNGT 1 cut(s) 1782
HpyCH4IV ACGT 2 cut(s) 613, 1001
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 287, 851, 1760
HpySE526I ACGT 2 cut(s) 613, 1001
Hsp92I GRCGYC 1 cut(s) 1649
Hsp92II CATG 6 cut(s) 224, 259, 589, 1477, 1532, 1811
HspAI GCGC 1 cut(s) 879
Ksp22I TGATCA 3 cut(s) 817, 982, 1792
Kzo9I GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
LmnI GCTCC 5 cut(s) 455, 762, 1307, 1491, 1560
Lsp1109I GCAGC 3 cut(s) 445, 493, 829
LweI GCATC 6 cut(s) 46, 261, 737, 1004, 1319, 1624
MaeI CTAG 4 cut(s) 342, 642, 1299, 1452
MaeII ACGT 2 cut(s) 613, 1001
MaeIII GTNAC 4 cut(s) 1002, 1011, 1056, 1341
MalI GATC 6 cut(s) 73, 756, 819, 984, 1413, 1794
MboI GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
MboII GAAGA 6 cut(s) 296, 383, 806, 1366, 1397, 1467
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 2 cut(s) 754, 1411
MhlI GDGCHC 2 cut(s) 1496, 1711
MlsI TGGCCA 1 cut(s) 260
MluNI TGGCCA 1 cut(s) 260
MlyI GAGTC 4 cut(s) 1019, 1064, 1081, 1138
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 260
MscI TGGCCA 1 cut(s) 260
MseI TTAA 6 cut(s) 14, 470, 522, 834, 1788, 1834
MslI CAYNNNNRTG 2 cut(s) 1628, 1780
Msp20I TGGCCA 1 cut(s) 260
MspI CCGG 1 cut(s) 1117
MspR9I CCNGG 1 cut(s) 912
MunI CAATTG 1 cut(s) 624
Mva1269I GAATGC 5 cut(s) 188, 682, 765, 1550, 1623
MvaI CCWGG 1 cut(s) 912
MwoI GCNNNNNNNGC 4 cut(s) 83, 287, 851, 1760
NdeI CATATG 1 cut(s) 637
NdeII GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
NlaIII CATG 6 cut(s) 224, 259, 589, 1477, 1532, 1811
NlaIV GGNNCC 4 cut(s) 330, 1283, 1413, 1493
NmuCI GTSAC 4 cut(s) 1002, 1011, 1056, 1341
OliI CACNNNNGTG 1 cut(s) 1780
PctI GAATGC 5 cut(s) 188, 682, 765, 1550, 1623
PfeI GAWTC 6 cut(s) 113, 419, 485, 1025, 1043, 1601
PflMI CCANNNNNTGG 1 cut(s) 1694
PkrI GCNGC 3 cut(s) 460, 508, 844
PleI GAGTC 4 cut(s) 1018, 1063, 1080, 1137
PpsI GAGTC 4 cut(s) 1018, 1063, 1080, 1137
PpuMI RGGWCCY 1 cut(s) 908
PshBI ATTAAT 1 cut(s) 1788
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 1 cut(s) 910
PspFI CCCAGC 1 cut(s) 331
PspGI CCWGG 1 cut(s) 910
PspN4I GGNNCC 4 cut(s) 330, 1283, 1413, 1493
PspPI GGNCC 3 cut(s) 328, 908, 1595
PspPPI RGGWCCY 1 cut(s) 908
PstI CTGCAG 1 cut(s) 511
PsuI RGATCY 2 cut(s) 754, 1411
RsaI GTAC 2 cut(s) 237, 1202
RsaNI GTAC 2 cut(s) 236, 1201
RseI CAYNNNNRTG 2 cut(s) 1628, 1780
SaqAI TTAA 6 cut(s) 14, 470, 522, 834, 1788, 1834
SatI GCNGC 3 cut(s) 459, 507, 843
Sau3AI GATC 6 cut(s) 71, 754, 817, 982, 1411, 1792
Sau96I GGNCC 3 cut(s) 328, 908, 1595
SchI GAGTC 4 cut(s) 1019, 1064, 1081, 1138
ScrFI CCNGG 1 cut(s) 912
SduI GDGCHC 2 cut(s) 1496, 1711
SfaNI GCATC 6 cut(s) 46, 261, 737, 1004, 1319, 1624
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 2 cut(s) 328, 908
SmiMI CAYNNNNRTG 2 cut(s) 1628, 1780
SmlI CTYRAG 3 cut(s) 435, 779, 1160
SmoI CTYRAG 3 cut(s) 435, 779, 1160
SsiI CCGC 2 cut(s) 667, 709
SspMI CTAG 4 cut(s) 342, 642, 1299, 1452
StyD4I CCNGG 1 cut(s) 910
StyI CCWWGG 4 cut(s) 117, 276, 758, 1298
TaaI ACNGT 1 cut(s) 1782
TaiI ACGT 2 cut(s) 616, 1004
TaqI TCGA 2 cut(s) 1205, 1714
TfiI GAWTC 6 cut(s) 113, 419, 485, 1025, 1043, 1601
Tru1I TTAA 6 cut(s) 14, 470, 522, 834, 1788, 1834
Tru9I TTAA 6 cut(s) 14, 470, 522, 834, 1788, 1834
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 4 cut(s) 1002, 1011, 1056, 1341
TseI GCWGC 3 cut(s) 458, 506, 842
Tsp45I GTSAC 4 cut(s) 1002, 1011, 1056, 1341
TspRI CASTG 1 cut(s) 93
Van91I CCANNNNNTGG 1 cut(s) 1694
VpaK11BI GGWCC 2 cut(s) 328, 908
VspI ATTAAT 1 cut(s) 1788
XapI RAATTY 7 cut(s) 697, 733, 931, 1087, 1238, 1271, 1481
XcmI CCANNNNNNNNNTGG 1 cut(s) 542
XmaJI CCTAGG 1 cut(s) 1298
XmiI GTMKAC 1 cut(s) 1425
XspI CTAG 4 cut(s) 342, 642, 1299, 1452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.