No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 |
| fragaria_vesca | FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 |
| malus_domestica | MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1 |
| prunus_persica | Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1 |
| pyrus_communis | pycom03g08170 pycom12g00260 |
| rosa_chinensis | RchiOBHm_Chr3g0497191 |
| rosa_laevigata | RLG00000022472 |
| rosa_multiflora | Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00388290 |
| rosa_rugosa | Rorug03G0291700 |
| rosa_samantha | Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000 |
| rosa_wichuraiana | Rw3G029450 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1694 |
| AccI | GTMKAC | 1 cut(s) | 1425 |
| AciI | CCGC | 2 cut(s) | 667, 709 |
| AclWI | GGATC | 3 cut(s) | 749, 1406, 1419 |
| AcoI | YGGCCR | 1 cut(s) | 258 |
| AcsI | RAATTY | 7 cut(s) | 697, 733, 931, 1087, 1238, 1271, 1481 |
| AcuI | CTGAAG | 2 cut(s) | 390, 1391 |
| AcyI | GRCGYC | 1 cut(s) | 1649 |
| AdeI | CACNNNGTG | 1 cut(s) | 1532 |
| AfaI | GTAC | 2 cut(s) | 237, 1202 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1304, 1603, 1694, 1717 |
| AjnI | CCWGG | 1 cut(s) | 910 |
| AleI | CACNNNNGTG | 1 cut(s) | 1780 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1157, 1189 |
| Alw26I | GTCTC | 2 cut(s) | 1161, 1656 |
| AlwI | GGATC | 3 cut(s) | 749, 1406, 1419 |
| Ama87I | CYCGRG | 2 cut(s) | 1007, 1188 |
| AoxI | GGCC | 3 cut(s) | 258, 946, 1594 |
| ApeKI | GCWGC | 3 cut(s) | 458, 506, 842 |
| ApoI | RAATTY | 7 cut(s) | 697, 733, 931, 1087, 1238, 1271, 1481 |
| AseI | ATTAAT | 1 cut(s) | 1788 |
| AspA2I | CCTAGG | 1 cut(s) | 1298 |
| AspLEI | GCGC | 1 cut(s) | 881 |
| AspS9I | GGNCC | 3 cut(s) | 328, 908, 1595 |
| AsuHPI | GGTGA | 6 cut(s) | 742, 992, 996, 1050, 1586, 1811 |
| AvaI | CYCGRG | 2 cut(s) | 1007, 1188 |
| AvaII | GGWCC | 2 cut(s) | 328, 908 |
| AvrII | CCTAGG | 1 cut(s) | 1298 |
| BaeGI | GKGCMC | 1 cut(s) | 1711 |
| BalI | TGGCCA | 1 cut(s) | 260 |
| BamHI | GGATCC | 1 cut(s) | 1411 |
| BanII | GRGCYC | 1 cut(s) | 1496 |
| BauI | CACGAG | 1 cut(s) | 213 |
| BbsI | GAAGAC | 1 cut(s) | 378 |
| BbvI | GCAGC | 3 cut(s) | 445, 493, 829 |
| BccI | CCATC | 5 cut(s) | 511, 817, 1160, 1361, 1613 |
| BciT130I | CCWGG | 1 cut(s) | 912 |
| BclI | TGATCA | 3 cut(s) | 817, 982, 1792 |
| BcoDI | GTCTC | 2 cut(s) | 1161, 1656 |
| BfaI | CTAG | 4 cut(s) | 342, 642, 1299, 1452 |
| BfmI | CTRYAG | 1 cut(s) | 507 |
| BisI | GCNGC | 3 cut(s) | 459, 507, 843 |
| BlnI | CCTAGG | 1 cut(s) | 1298 |
| BlsI | GCNGC | 3 cut(s) | 460, 508, 844 |
| Bme1390I | CCNGG | 1 cut(s) | 912 |
| Bme18I | GGWCC | 2 cut(s) | 328, 908 |
| BmeT110I | CYCGRG | 2 cut(s) | 1007, 1188 |
| BmgT120I | GGNCC | 3 cut(s) | 328, 908, 1595 |
| BmiI | GGNNCC | 4 cut(s) | 330, 1283, 1413, 1493 |
| BmrFI | CCNGG | 1 cut(s) | 912 |
| BmsI | GCATC | 6 cut(s) | 46, 261, 737, 1004, 1319, 1624 |
| BpiI | GAAGAC | 1 cut(s) | 378 |
| BpmI | CTGGAG | 1 cut(s) | 474 |
| BpuEI | CTTGAG | 3 cut(s) | 420, 800, 1145 |
| BsaHI | GRCGYC | 1 cut(s) | 1649 |
| BsaJI | CCNNGG | 6 cut(s) | 117, 276, 758, 1298, 1385, 1629 |
| BsaWI | WCCGGW | 1 cut(s) | 1116 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 548, 578 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1304, 1603, 1694, 1717 |
| Bse1I | ACTGG | 2 cut(s) | 169, 1329 |
| Bse3DI | GCAATG | 1 cut(s) | 84 |
| BseBI | CCWGG | 1 cut(s) | 912 |
| BseDI | CCNNGG | 6 cut(s) | 117, 276, 758, 1298, 1385, 1629 |
| BseGI | GGATG | 2 cut(s) | 1171, 1639 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1304, 1603, 1694, 1717 |
| BseMI | GCAATG | 1 cut(s) | 84 |
| BseMII | CTCAG | 7 cut(s) | 584, 716, 765, 1191, 1328, 1431, 1667 |
| BseNI | ACTGG | 2 cut(s) | 169, 1329 |
| BseRI | GAGGAG | 4 cut(s) | 22, 572, 973, 1402 |
| BseSI | GKGCMC | 1 cut(s) | 1711 |
| BseXI | GCAGC | 3 cut(s) | 445, 493, 829 |
| BseYI | CCCAGC | 1 cut(s) | 331 |
| BsgI | GTGCAG | 2 cut(s) | 309, 444 |
| BshFI | GGCC | 3 cut(s) | 260, 948, 1596 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1007, 1188 |
| BsiSI | CCGG | 1 cut(s) | 1117 |
| BslFI | GGGAC | 1 cut(s) | 314 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1304, 1603, 1694, 1717 |
| BsmAI | GTCTC | 2 cut(s) | 1161, 1656 |
| BsmBI | CGTCTC | 1 cut(s) | 1656 |
| BsmFI | GGGAC | 1 cut(s) | 314 |
| BsmI | GAATGC | 5 cut(s) | 188, 682, 765, 1550, 1623 |
| BsnI | GGCC | 3 cut(s) | 260, 948, 1596 |
| BsoBI | CYCGRG | 2 cut(s) | 1007, 1188 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1496, 1711 |
| Bsp143I | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| BspACI | CCGC | 2 cut(s) | 667, 709 |
| BspANI | GGCC | 3 cut(s) | 260, 948, 1596 |
| BspCNI | CTCAG | 7 cut(s) | 583, 715, 766, 1190, 1329, 1432, 1666 |
| BspLI | GGNNCC | 4 cut(s) | 330, 1283, 1413, 1493 |
| BspMAI | CTGCAG | 1 cut(s) | 511 |
| BspPI | GGATC | 3 cut(s) | 749, 1406, 1419 |
| BsrDI | GCAATG | 1 cut(s) | 84 |
| BsrI | ACTGG | 2 cut(s) | 169, 1329 |
| BssECI | CCNNGG | 6 cut(s) | 117, 276, 758, 1298, 1385, 1629 |
| BssMI | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| BssNI | GRCGYC | 1 cut(s) | 1649 |
| BssSI | CACGAG | 1 cut(s) | 213 |
| BssT1I | CCWWGG | 4 cut(s) | 117, 276, 758, 1298 |
| Bst2BI | CACGAG | 1 cut(s) | 213 |
| Bst2UI | CCWGG | 1 cut(s) | 912 |
| Bst4CI | ACNGT | 1 cut(s) | 1782 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 1410 |
| BstACI | GRCGYC | 1 cut(s) | 1649 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1760 |
| BstC8I | GCNNGC | 2 cut(s) | 316, 1647 |
| BstDSI | CCRYGG | 1 cut(s) | 1629 |
| BstF5I | GGATG | 2 cut(s) | 1171, 1639 |
| BstHHI | GCGC | 1 cut(s) | 881 |
| BstKTI | GATC | 6 cut(s) | 74, 757, 820, 985, 1414, 1795 |
| BstMAI | GTCTC | 2 cut(s) | 1161, 1656 |
| BstMBI | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 83, 287, 851, 1760 |
| BstNI | CCWGG | 1 cut(s) | 912 |
| BstSCI | CCNGG | 1 cut(s) | 910 |
| BstSFI | CTRYAG | 1 cut(s) | 507 |
| BstSLI | GKGCMC | 1 cut(s) | 1711 |
| BstV1I | GCAGC | 3 cut(s) | 445, 493, 829 |
| BstV2I | GAAGAC | 1 cut(s) | 378 |
| BstX2I | RGATCY | 2 cut(s) | 754, 1411 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1782 |
| BstYI | RGATCY | 2 cut(s) | 754, 1411 |
| BsuRI | GGCC | 3 cut(s) | 260, 948, 1596 |
| BtgI | CCRYGG | 1 cut(s) | 1629 |
| BtsCI | GGATG | 2 cut(s) | 1171, 1639 |
| BtsIMutI | CAGTG | 1 cut(s) | 86 |
| Cac8I | GCNNGC | 2 cut(s) | 316, 1647 |
| CfoI | GCGC | 1 cut(s) | 881 |
| Cfr13I | GGNCC | 3 cut(s) | 328, 908, 1595 |
| CseI | GACGC | 1 cut(s) | 1638 |
| Csp6I | GTAC | 2 cut(s) | 236, 1201 |
| CviAII | CATG | 6 cut(s) | 221, 256, 586, 1474, 1529, 1808 |
| CviQI | GTAC | 2 cut(s) | 236, 1201 |
| DpnI | GATC | 6 cut(s) | 73, 756, 819, 984, 1413, 1794 |
| DpnII | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| DraIII | CACNNNGTG | 1 cut(s) | 1532 |
| EaeI | YGGCCR | 1 cut(s) | 258 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 1410 |
| EarI | CTCTTC | 2 cut(s) | 309, 1410 |
| Eco130I | CCWWGG | 4 cut(s) | 117, 276, 758, 1298 |
| Eco24I | GRGCYC | 1 cut(s) | 1496 |
| Eco32I | GATATC | 1 cut(s) | 1214 |
| Eco47I | GGWCC | 2 cut(s) | 328, 908 |
| Eco57I | CTGAAG | 2 cut(s) | 390, 1391 |
| Eco88I | CYCGRG | 2 cut(s) | 1007, 1188 |
| EcoO109I | RGGNCCY | 1 cut(s) | 908 |
| EcoRI | GAATTC | 2 cut(s) | 697, 1238 |
| EcoRII | CCWGG | 1 cut(s) | 910 |
| EcoRV | GATATC | 1 cut(s) | 1214 |
| EcoT14I | CCWWGG | 4 cut(s) | 117, 276, 758, 1298 |
| EcoT38I | GRGCYC | 1 cut(s) | 1496 |
| ErhI | CCWWGG | 4 cut(s) | 117, 276, 758, 1298 |
| Esp3I | CGTCTC | 1 cut(s) | 1656 |
| FaeI | CATG | 6 cut(s) | 224, 259, 589, 1477, 1532, 1811 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1154, 1186 |
| FaqI | GGGAC | 1 cut(s) | 314 |
| FatI | CATG | 6 cut(s) | 220, 255, 585, 1473, 1528, 1807 |
| FauNDI | CATATG | 1 cut(s) | 637 |
| FbaI | TGATCA | 3 cut(s) | 817, 982, 1792 |
| FblI | GTMKAC | 1 cut(s) | 1425 |
| Fnu4HI | GCNGC | 3 cut(s) | 459, 507, 843 |
| FokI | GGATG | 2 cut(s) | 1178, 1646 |
| FriOI | GRGCYC | 1 cut(s) | 1496 |
| Fsp4HI | GCNGC | 3 cut(s) | 459, 507, 843 |
| FspBI | CTAG | 4 cut(s) | 342, 642, 1299, 1452 |
| GlaI | GCGC | 1 cut(s) | 880 |
| GluI | GCNGC | 3 cut(s) | 459, 507, 843 |
| GsaI | CCCAGC | 1 cut(s) | 335 |
| GsuI | CTGGAG | 1 cut(s) | 474 |
| HaeIII | GGCC | 3 cut(s) | 260, 948, 1596 |
| HapII | CCGG | 1 cut(s) | 1117 |
| HgaI | GACGC | 1 cut(s) | 1638 |
| HhaI | GCGC | 1 cut(s) | 881 |
| Hin1I | GRCGYC | 1 cut(s) | 1649 |
| Hin1II | CATG | 6 cut(s) | 224, 259, 589, 1477, 1532, 1811 |
| Hin6I | GCGC | 1 cut(s) | 879 |
| HinP1I | GCGC | 1 cut(s) | 879 |
| HincII | GTYRAC | 1 cut(s) | 1363 |
| HindII | GTYRAC | 1 cut(s) | 1363 |
| HindIII | AAGCTT | 1 cut(s) | 1121 |
| HpaII | CCGG | 1 cut(s) | 1117 |
| HphI | GGTGA | 6 cut(s) | 742, 992, 996, 1050, 1586, 1811 |
| Hpy166II | GTNNAC | 6 cut(s) | 567, 1114, 1363, 1426, 1537, 1742 |
| Hpy8I | GTNNAC | 6 cut(s) | 567, 1114, 1363, 1426, 1537, 1742 |
| Hpy99I | CGWCG | 1 cut(s) | 1716 |
| HpyAV | CCTTC | 5 cut(s) | 686, 1247, 1511, 1796, 1805 |
| HpyCH4III | ACNGT | 1 cut(s) | 1782 |
| HpyCH4IV | ACGT | 2 cut(s) | 613, 1001 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 83, 287, 851, 1760 |
| HpySE526I | ACGT | 2 cut(s) | 613, 1001 |
| Hsp92I | GRCGYC | 1 cut(s) | 1649 |
| Hsp92II | CATG | 6 cut(s) | 224, 259, 589, 1477, 1532, 1811 |
| HspAI | GCGC | 1 cut(s) | 879 |
| Ksp22I | TGATCA | 3 cut(s) | 817, 982, 1792 |
| Kzo9I | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| LmnI | GCTCC | 5 cut(s) | 455, 762, 1307, 1491, 1560 |
| Lsp1109I | GCAGC | 3 cut(s) | 445, 493, 829 |
| LweI | GCATC | 6 cut(s) | 46, 261, 737, 1004, 1319, 1624 |
| MaeI | CTAG | 4 cut(s) | 342, 642, 1299, 1452 |
| MaeII | ACGT | 2 cut(s) | 613, 1001 |
| MaeIII | GTNAC | 4 cut(s) | 1002, 1011, 1056, 1341 |
| MalI | GATC | 6 cut(s) | 73, 756, 819, 984, 1413, 1794 |
| MboI | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| MboII | GAAGA | 6 cut(s) | 296, 383, 806, 1366, 1397, 1467 |
| MfeI | CAATTG | 1 cut(s) | 624 |
| MflI | RGATCY | 2 cut(s) | 754, 1411 |
| MhlI | GDGCHC | 2 cut(s) | 1496, 1711 |
| MlsI | TGGCCA | 1 cut(s) | 260 |
| MluNI | TGGCCA | 1 cut(s) | 260 |
| MlyI | GAGTC | 4 cut(s) | 1019, 1064, 1081, 1138 |
| MmeI | TCCRAC | 1 cut(s) | 396 |
| Mox20I | TGGCCA | 1 cut(s) | 260 |
| MscI | TGGCCA | 1 cut(s) | 260 |
| MseI | TTAA | 6 cut(s) | 14, 470, 522, 834, 1788, 1834 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1628, 1780 |
| Msp20I | TGGCCA | 1 cut(s) | 260 |
| MspI | CCGG | 1 cut(s) | 1117 |
| MspR9I | CCNGG | 1 cut(s) | 912 |
| MunI | CAATTG | 1 cut(s) | 624 |
| Mva1269I | GAATGC | 5 cut(s) | 188, 682, 765, 1550, 1623 |
| MvaI | CCWGG | 1 cut(s) | 912 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 83, 287, 851, 1760 |
| NdeI | CATATG | 1 cut(s) | 637 |
| NdeII | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| NlaIII | CATG | 6 cut(s) | 224, 259, 589, 1477, 1532, 1811 |
| NlaIV | GGNNCC | 4 cut(s) | 330, 1283, 1413, 1493 |
| NmuCI | GTSAC | 4 cut(s) | 1002, 1011, 1056, 1341 |
| OliI | CACNNNNGTG | 1 cut(s) | 1780 |
| PctI | GAATGC | 5 cut(s) | 188, 682, 765, 1550, 1623 |
| PfeI | GAWTC | 6 cut(s) | 113, 419, 485, 1025, 1043, 1601 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1694 |
| PkrI | GCNGC | 3 cut(s) | 460, 508, 844 |
| PleI | GAGTC | 4 cut(s) | 1018, 1063, 1080, 1137 |
| PpsI | GAGTC | 4 cut(s) | 1018, 1063, 1080, 1137 |
| PpuMI | RGGWCCY | 1 cut(s) | 908 |
| PshBI | ATTAAT | 1 cut(s) | 1788 |
| Psp5II | RGGWCCY | 1 cut(s) | 908 |
| Psp6I | CCWGG | 1 cut(s) | 910 |
| PspFI | CCCAGC | 1 cut(s) | 331 |
| PspGI | CCWGG | 1 cut(s) | 910 |
| PspN4I | GGNNCC | 4 cut(s) | 330, 1283, 1413, 1493 |
| PspPI | GGNCC | 3 cut(s) | 328, 908, 1595 |
| PspPPI | RGGWCCY | 1 cut(s) | 908 |
| PstI | CTGCAG | 1 cut(s) | 511 |
| PsuI | RGATCY | 2 cut(s) | 754, 1411 |
| RsaI | GTAC | 2 cut(s) | 237, 1202 |
| RsaNI | GTAC | 2 cut(s) | 236, 1201 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1628, 1780 |
| SaqAI | TTAA | 6 cut(s) | 14, 470, 522, 834, 1788, 1834 |
| SatI | GCNGC | 3 cut(s) | 459, 507, 843 |
| Sau3AI | GATC | 6 cut(s) | 71, 754, 817, 982, 1411, 1792 |
| Sau96I | GGNCC | 3 cut(s) | 328, 908, 1595 |
| SchI | GAGTC | 4 cut(s) | 1019, 1064, 1081, 1138 |
| ScrFI | CCNGG | 1 cut(s) | 912 |
| SduI | GDGCHC | 2 cut(s) | 1496, 1711 |
| SfaNI | GCATC | 6 cut(s) | 46, 261, 737, 1004, 1319, 1624 |
| SfcI | CTRYAG | 1 cut(s) | 507 |
| SinI | GGWCC | 2 cut(s) | 328, 908 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1628, 1780 |
| SmlI | CTYRAG | 3 cut(s) | 435, 779, 1160 |
| SmoI | CTYRAG | 3 cut(s) | 435, 779, 1160 |
| SsiI | CCGC | 2 cut(s) | 667, 709 |
| SspMI | CTAG | 4 cut(s) | 342, 642, 1299, 1452 |
| StyD4I | CCNGG | 1 cut(s) | 910 |
| StyI | CCWWGG | 4 cut(s) | 117, 276, 758, 1298 |
| TaaI | ACNGT | 1 cut(s) | 1782 |
| TaiI | ACGT | 2 cut(s) | 616, 1004 |
| TaqI | TCGA | 2 cut(s) | 1205, 1714 |
| TfiI | GAWTC | 6 cut(s) | 113, 419, 485, 1025, 1043, 1601 |
| Tru1I | TTAA | 6 cut(s) | 14, 470, 522, 834, 1788, 1834 |
| Tru9I | TTAA | 6 cut(s) | 14, 470, 522, 834, 1788, 1834 |
| TscAI | CASTG | 1 cut(s) | 93 |
| TseFI | GTSAC | 4 cut(s) | 1002, 1011, 1056, 1341 |
| TseI | GCWGC | 3 cut(s) | 458, 506, 842 |
| Tsp45I | GTSAC | 4 cut(s) | 1002, 1011, 1056, 1341 |
| TspRI | CASTG | 1 cut(s) | 93 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1694 |
| VpaK11BI | GGWCC | 2 cut(s) | 328, 908 |
| VspI | ATTAAT | 1 cut(s) | 1788 |
| XapI | RAATTY | 7 cut(s) | 697, 733, 931, 1087, 1238, 1271, 1481 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 542 |
| XmaJI | CCTAGG | 1 cut(s) | 1298 |
| XmiI | GTMKAC | 1 cut(s) | 1425 |
| XspI | CTAG | 4 cut(s) | 342, 642, 1299, 1452 |