Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Reverse (-)

1027866 .. 1030677

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1665 bp

ATGGGAAGAAATCTTGGTTCGGCATTTAGACAAGAGTTGGCTAATCTTGACAAAGATCCAGATTCCCACAAGACTGCAATGAGCAATTTGAGATCGATTGTGAAAGATTTGGATGCAAAGGTGGTTCATGTTTTTGTTGCTCAACTTTCTGATGTCAAAGAGATTGGGTTGGAGTCTGGTGGTTACACTGTATCTCTCTTTGAAGACCTTGCTCGTGCTCATGGAGTCAAGATTGCTCCTCATATAGACATTATCATGCCGGCGATTATAAGAACATTGAGCTCCAGTGAAGGGTCTTTACGTGTTCAACAGGCTTGCTCAAGGGCAGTAGCTGCTATGGCTAGATATGGAATTGATCCTACAACACCAGAAGATAAGAAAACGAATGTGATTCATTCTCTTTGCAAGCCACTCTCTGATTCTCTTATAGATTCGCAACATCAACAGCATCTTGCTTTGGGATCTGCTCTTTGCTTGAAGTCACTTGTGGATTGCGATAATTGGCGATCTGCTTCTAGTGAAATGGTTAATAATGTTTGTCAAAGCTTAGCTGTTGCTCTTGAAGCTACTTCAAGTGAAGCTAAGTCTCATATGGCACTTGTTATGGCACTTTCCAAGCACAATCCTTTTACTGTCGAGGCATATGCAAGGCTTTTTGTGAAGTCGGGTCTGAGGATTCTGGATTTAGGTGTTGTTGAGGGAGATTCTCAGAAACGGCTTTTAGCTATACAGATGCTCAACTTTCTGATGAAGAATCTGAATCCCAAGAGTATTTCTTCTGAGTTAGAGCTTATATATCAAGAGATGGAGAAATACCAAAAAGATCAGCATTATGTCAAAATGGCAGCTCATGAAACCATGAGACAAGCAGAGAGATTAATATGTGAGGCAGATCCGATGTTTGATGCAGAGAACTGCAAGCCCCGAAACTCGCTCAGCGGATCAGTCAAGTCTACATCAAGTCTGCGAGAACATGATGGGAGTGTCTATAGTAGACAAGATAGGAGTTATGTAAACGATCAAGACGAGTATGATGTTTTGTTTTCTGGTGTAGCCAGTGGAAGAACTCTTGTCTCAGGCTCTCCTCTGGTGACTTTCGGAGACAATAACCAAGAAACTGGTTTTGTTATCGAGAGTCCAAGAATTGGAGATCAGATTCAATGTTCTGGTGTTGAAAATGGCAACATTGAGTCAGTTTGGTTCCATCAGCGGAACAGAAGCTCCGAGTTTAATGAATCTGTGTGCTCTAGGACCAACCGCTCAAGAAGTTCAAGACGAAACACCAAGAAGAGACAATCAGGAGACATTTGTTCAAAACATCACAGGCATGGTTTCGCACAAGATCCATTCACTGAGTTACTAGATAACAGACAGCAGCTGCTACAGTACAGTGAAACCTCGTCATCATCATCAATATATGATACCTCTGGTACTACAACTCCAACCAACACAACAGAAGATATCTGTGAGAAACCAAAAACAGATTTGGATTCTGAGGCCAAACTTAAGACAGTGGAGACTGAACTAGACCCACGTCTGGGACGGAGCAAGGGTGTGTTAAAATTGGGATTGAGTGTCTTCTCTATTGCAGTTGCAGGGTTTGCTTCTTTCATGTGGATGTATCTCCAGGATGATATGATGCCTCCTCATCTTGTTCCGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

554

Amino Acids

61.44

Weight (kDa)

6.12

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOR1L1_N	PF24714	18 - 199	2.7e-18	TORTIFOLIA1 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	269
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AccBSI	CCGCTC	1 cut(s)	1260
AccI	GTMKAC	2 cut(s)	953, 994
AciI	CCGC	3 cut(s)	939, 1210, 1258
AclWI	GGATC	6 cut(s)	50, 350, 469, 887, 949, 1337
AfaI	GTAC	2 cut(s)	1388, 1432
AfiI	CCNNNNNNNGG	4 cut(s)	291, 1145, 1537, 1538
AflII	CTTAAG	1 cut(s)	1505
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	9 cut(s)	203, 308, 478, 563, 573, 1160, 1175, 1272, 1314
AjiI	CACGTC	1 cut(s)	1535
AjnI	CCWGG	1 cut(s)	1626
AloI	GAACNNNNNNTCC	2 cut(s)	1205, 1237
Alw21I	GWGCWC	3 cut(s)	220, 284, 1247
Alw26I	GTCTC	7 cut(s)	591, 856, 1078, 1095, 1285, 1296, 1511
AlwI	GGATC	6 cut(s)	50, 350, 469, 887, 949, 1337
AlwNI	CAGNNNCTG	2 cut(s)	332, 1378
AoxI	GGCC	1 cut(s)	1497
ApeKI	GCWGC	4 cut(s)	332, 845, 1375, 1378
AseI	ATTAAT	1 cut(s)	878
AspS9I	GGNCC	1 cut(s)	1251
AsuHPI	GGTGA	1 cut(s)	1102
AvaII	GGWCC	1 cut(s)	1251
BanII	GRGCYC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BauI	CACGAG	1 cut(s)	213
BbsI	GAAGAC	2 cut(s)	210, 1570
Bbv12I	GWGCWC	3 cut(s)	220, 284, 1247
BbvI	GCAGC	4 cut(s)	319, 857, 1365, 1387
BccI	CCATC	3 cut(s)	799, 971, 1212
BceAI	ACGGC	1 cut(s)	731
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	1 cut(s)	1628
BcoDI	GTCTC	7 cut(s)	591, 856, 1078, 1095, 1285, 1296, 1511
BfaI	CTAG	5 cut(s)	342, 516, 1248, 1361, 1526
BfmI	CTRYAG	2 cut(s)	988, 1382
BfrI	CTTAAG	1 cut(s)	1505
BisI	GCNGC	4 cut(s)	333, 846, 1376, 1379
BlpI	GCTNAGC	2 cut(s)	547, 935
BlsI	GCNGC	4 cut(s)	334, 847, 1377, 1380
Bme1390I	CCNGG	1 cut(s)	1628
Bme18I	GGWCC	1 cut(s)	1251
BmgBI	CACGTC	1 cut(s)	1535
BmgT120I	GGNCC	1 cut(s)	1251
BmiI	GGNNCC	1 cut(s)	1202
BmrFI	CCNGG	1 cut(s)	1628
BmsI	GCATC	5 cut(s)	103, 457, 723, 895, 1629
BoxI	GACNNNNGTC	1 cut(s)	1533
BpiI	GAAGAC	2 cut(s)	210, 1570
BpmI	CTGGAG	2 cut(s)	268, 1610
Bpu1102I	GCTNAGC	2 cut(s)	547, 935
BpuEI	CTTGAG	2 cut(s)	304, 1246
Bsa29I	ATCGAT	1 cut(s)	95
BsaAI	YACGTR	1 cut(s)	302
BsaXI	ACNNNNNCTCC	6 cut(s)	1205, 1235, 1423, 1453, 1537, 1567
Bsc4I	CCNNNNNNNGG	4 cut(s)	291, 1145, 1537, 1538
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	3 cut(s)	285, 1056, 1123
Bse3DI	GCAATG	1 cut(s)	84
BseBI	CCWGG	1 cut(s)	1628
BseCI	ATCGAT	1 cut(s)	95
BseGI	GGATG	3 cut(s)	118, 1623, 1636
BseLI	CCNNNNNNNGG	4 cut(s)	291, 1145, 1537, 1538
BseMI	GCAATG	1 cut(s)	84
BseMII	CTCAG	7 cut(s)	662, 722, 771, 949, 1089, 1344, 1485
BseNI	ACTGG	3 cut(s)	285, 1056, 1123
BseRI	GAGGAG	3 cut(s)	228, 1074, 1635
BseXI	GCAGC	4 cut(s)	319, 857, 1365, 1387
BshFI	GGCC	1 cut(s)	1499
BshVI	ATCGAT	1 cut(s)	95
BsiHKAI	GWGCWC	3 cut(s)	220, 284, 1247
BsiSI	CCGG	1 cut(s)	260
BslFI	GGGAC	1 cut(s)	1554
BslI	CCNNNNNNNGG	4 cut(s)	291, 1145, 1537, 1538
BsmAI	GTCTC	7 cut(s)	591, 856, 1078, 1095, 1285, 1296, 1511
BsmFI	GGGAC	1 cut(s)	1554
BsnI	GGCC	1 cut(s)	1499
Bsp1286I	GDGCHC	3 cut(s)	220, 284, 1247
Bsp1720I	GCTNAGC	2 cut(s)	547, 935
BspACI	CCGC	3 cut(s)	939, 1210, 1258
BspANI	GGCC	1 cut(s)	1499
BspCNI	CTCAG	7 cut(s)	663, 721, 772, 948, 1088, 1345, 1486
BspDI	ATCGAT	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	850
BspLI	GGNNCC	1 cut(s)	1202
BspPI	GGATC	6 cut(s)	50, 350, 469, 887, 949, 1337
BspTI	CTTAAG	1 cut(s)	1505
BsrBI	CCGCTC	1 cut(s)	1260
BsrDI	GCAATG	1 cut(s)	84
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	3 cut(s)	285, 1056, 1123
BssAI	RCCGGY	1 cut(s)	259
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	1628
Bst4CI	ACNGT	5 cut(s)	190, 634, 1386, 1391, 1513
Bst6I	CTCTTC	1 cut(s)	1283
BstAFI	CTTAAG	1 cut(s)	1505
BstAPI	GCANNNNNTGC	2 cut(s)	332, 1601
BstBAI	YACGTR	1 cut(s)	302
BstC8I	GCNNGC	4 cut(s)	261, 316, 407, 920
BstDEI	CTNAG	9 cut(s)	547, 582, 671, 708, 780, 935, 1075, 1353, 1494
BstF5I	GGATG	3 cut(s)	118, 1623, 1636
BstMAI	GTCTC	7 cut(s)	591, 856, 1078, 1095, 1285, 1296, 1511
BstMWI	GCNNNNNNNGC	4 cut(s)	332, 338, 563, 1601
BstNI	CCWGG	1 cut(s)	1628
BstPAI	GACNNNNGTC	1 cut(s)	1533
BstSCI	CCNGG	1 cut(s)	1626
BstSFI	CTRYAG	2 cut(s)	988, 1382
BstV1I	GCAGC	4 cut(s)	319, 857, 1365, 1387
BstV2I	GAAGAC	2 cut(s)	210, 1570
BstX2I	RGATCY	4 cut(s)	55, 461, 892, 1342
BstXI	CCANNNNNNTGG	1 cut(s)	1118
BstYI	RGATCY	4 cut(s)	55, 461, 892, 1342
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	1499
BsuTUI	ATCGAT	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	1535
BtsCI	GGATG	3 cut(s)	118, 1623, 1636
BtsIMutI	CAGTG	6 cut(s)	186, 292, 1063, 1350, 1396, 1518
Cac8I	GCNNGC	4 cut(s)	261, 316, 407, 920
CaiI	CAGNNNCTG	2 cut(s)	332, 1378
CciI	TCATGA	1 cut(s)	850
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	1251
ClaI	ATCGAT	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	1387, 1431
CviAII	CATG	8 cut(s)	128, 221, 256, 851, 859, 974, 1328, 1612
CviQI	GTAC	2 cut(s)	1387, 1431
DdeI	CTNAG	9 cut(s)	547, 582, 671, 708, 780, 935, 1075, 1353, 1494
Eam1104I	CTCTTC	1 cut(s)	1283
EarI	CTCTTC	1 cut(s)	1283
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco32I	GATATC	1 cut(s)	1462
Eco47I	GGWCC	1 cut(s)	1251
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	1626
EcoRV	GATATC	1 cut(s)	1462
EcoT38I	GRGCYC	1 cut(s)	284
FaeI	CATG	8 cut(s)	131, 224, 259, 854, 862, 977, 1331, 1615
FaqI	GGGAC	1 cut(s)	1554
FatI	CATG	8 cut(s)	127, 220, 255, 850, 858, 973, 1327, 1611
FauNDI	CATATG	2 cut(s)	591, 643
FblI	GTMKAC	2 cut(s)	953, 994
Fnu4HI	GCNGC	4 cut(s)	333, 846, 1376, 1379
FokI	GGATG	3 cut(s)	125, 1630, 1643
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	4 cut(s)	333, 846, 1376, 1379
FspBI	CTAG	5 cut(s)	342, 516, 1248, 1361, 1526
GluI	GCNGC	4 cut(s)	333, 846, 1376, 1379
GsuI	CTGGAG	2 cut(s)	268, 1610
HaeIII	GGCC	1 cut(s)	1499
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	8 cut(s)	131, 224, 259, 854, 862, 977, 1331, 1615
HindIII	AAGCTT	1 cut(s)	544
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	1102
Hpy166II	GTNNAC	3 cut(s)	954, 995, 1015
Hpy8I	GTNNAC	3 cut(s)	954, 995, 1015
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	5 cut(s)	190, 634, 1386, 1391, 1513
HpyCH4IV	ACGT	2 cut(s)	301, 1534
HpyCH4V	TGCA	8 cut(s)	77, 116, 405, 647, 908, 918, 1589, 1595
HpyF10VI	GCNNNNNNNGC	4 cut(s)	332, 338, 563, 1601
HpyF3I	CTNAG	9 cut(s)	547, 582, 671, 708, 780, 935, 1075, 1353, 1494
HpySE526I	ACGT	2 cut(s)	301, 1534
Hsp92II	CATG	8 cut(s)	131, 224, 259, 854, 862, 977, 1331, 1615
KroI	GCCGGC	1 cut(s)	259
KroNI	GCCGGC	1 cut(s)	261
LmnI	GCTCC	4 cut(s)	241, 287, 1226, 1545
Lsp1109I	GCAGC	4 cut(s)	319, 857, 1365, 1387
LweI	GCATC	5 cut(s)	103, 457, 723, 895, 1629
MaeI	CTAG	5 cut(s)	342, 516, 1248, 1361, 1526
MaeII	ACGT	2 cut(s)	301, 1534
MaeIII	GTNAC	4 cut(s)	182, 480, 1090, 1356
MbiI	CCGCTC	1 cut(s)	1260
MboII	GAAGA	9 cut(s)	18, 215, 383, 763, 768, 1074, 1300, 1469, 1570
MflI	RGATCY	4 cut(s)	55, 461, 892, 1342
MhlI	GDGCHC	3 cut(s)	220, 284, 1247
MluCI	AATT	5 cut(s)	85, 351, 499, 1143, 1562
MlyI	GAGTC	4 cut(s)	182, 234, 1144, 1199
MmeI	TCCRAC	2 cut(s)	150, 1466
MroNI	GCCGGC	1 cut(s)	259
MseI	TTAA	6 cut(s)	528, 878, 1230, 1506, 1559, 1663
MslI	CAYNNNNRTG	3 cut(s)	254, 1326, 1616
MspA1I	CMGCKG	3 cut(s)	939, 1210, 1378
MspCI	CTTAAG	1 cut(s)	1505
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	1628
MvaI	CCWGG	1 cut(s)	1628
MwoI	GCNNNNNNNGC	4 cut(s)	332, 338, 563, 1601
NaeI	GCCGGC	1 cut(s)	261
NdeI	CATATG	2 cut(s)	591, 643
NgoMIV	GCCGGC	1 cut(s)	259
NlaIII	CATG	8 cut(s)	131, 224, 259, 854, 862, 977, 1331, 1615
NlaIV	GGNNCC	1 cut(s)	1202
NmuCI	GTSAC	2 cut(s)	480, 1090
PagI	TCATGA	1 cut(s)	850
PcsI	WCGNNNNNNNCGW	1 cut(s)	1023
PdiI	GCCGGC	1 cut(s)	261
PflMI	CCANNNNNTGG	1 cut(s)	1145
PfoI	TCCNGGA	1 cut(s)	1626
PkrI	GCNGC	4 cut(s)	334, 847, 1377, 1380
PleI	GAGTC	4 cut(s)	181, 233, 1143, 1198
PpsI	GAGTC	4 cut(s)	181, 233, 1143, 1198
Ppu21I	YACGTR	1 cut(s)	302
PshAI	GACNNNNGTC	1 cut(s)	1533
PshBI	ATTAAT	1 cut(s)	878
PsiI	TTATAA	1 cut(s)	269
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	1626
PspGI	CCWGG	1 cut(s)	1626
PspN4I	GGNNCC	1 cut(s)	1202
PspPI	GGNCC	1 cut(s)	1251
PstNI	CAGNNNCTG	2 cut(s)	332, 1378
PsuI	RGATCY	4 cut(s)	55, 461, 892, 1342
PvuII	CAGCTG	1 cut(s)	1378
RsaI	GTAC	2 cut(s)	1388, 1432
RsaNI	GTAC	2 cut(s)	1387, 1431
RseI	CAYNNNNRTG	3 cut(s)	254, 1326, 1616
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	6 cut(s)	528, 878, 1230, 1506, 1559, 1663
SatI	GCNGC	4 cut(s)	333, 846, 1376, 1379
Sau96I	GGNCC	1 cut(s)	1251
SchI	GAGTC	4 cut(s)	182, 234, 1144, 1199
ScrFI	CCNGG	1 cut(s)	1628
SduI	GDGCHC	3 cut(s)	220, 284, 1247
SfaNI	GCATC	5 cut(s)	103, 457, 723, 895, 1629
SfcI	CTRYAG	2 cut(s)	988, 1382
SinI	GGWCC	1 cut(s)	1251
SmiMI	CAYNNNNRTG	3 cut(s)	254, 1326, 1616
SmlI	CTYRAG	3 cut(s)	319, 1261, 1505
SmoI	CTYRAG	3 cut(s)	319, 1261, 1505
Sse9I	AATT	5 cut(s)	85, 351, 499, 1143, 1562
SsiI	CCGC	3 cut(s)	939, 1210, 1258
SspMI	CTAG	5 cut(s)	342, 516, 1248, 1361, 1526
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	1626
TaaI	ACNGT	5 cut(s)	190, 634, 1386, 1391, 1513
TaiI	ACGT	2 cut(s)	304, 1537
TaqI	TCGA	3 cut(s)	95, 636, 1131
TasI	AATT	5 cut(s)	85, 351, 499, 1143, 1562
TatI	WGTACW	1 cut(s)	1386
Tru1I	TTAA	6 cut(s)	528, 878, 1230, 1506, 1559, 1663
Tru9I	TTAA	6 cut(s)	528, 878, 1230, 1506, 1559, 1663
TscAI	CASTG	6 cut(s)	193, 292, 1063, 1357, 1396, 1518
TseFI	GTSAC	2 cut(s)	480, 1090
TseI	GCWGC	4 cut(s)	332, 845, 1375, 1378
Tsp45I	GTSAC	2 cut(s)	480, 1090
TspDTI	ATGAA	6 cut(s)	116, 383, 764, 867, 1248, 1600
TspGWI	ACGGA	1 cut(s)	1558
TspRI	CASTG	6 cut(s)	193, 292, 1063, 1357, 1396, 1518
Van91I	CCANNNNNTGG	1 cut(s)	1145
Vha464I	CTTAAG	1 cut(s)	1505
VpaK11BI	GGWCC	1 cut(s)	1251
VspI	ATTAAT	1 cut(s)	878
XmiI	GTMKAC	2 cut(s)	953, 994
XspI	CTAG	5 cut(s)	342, 516, 1248, 1361, 1526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.