Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8084920.1

Orthogroup ID

OG0003221

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 587

Gene Structure 584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8084920.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 584 bp

atgaaagcactgaaatcctatgtgaaagatttggactccaaggcaatccctatgtttcttgcccaagtttcccagtccaaagactctggtcctttgaatggggaatgcaccatttctctctatgaagttcttgctcgtgttcatggtgtcaaaatcgtccctctcataaacagcatcatggcaaccataatcaagacactaacttcgagtgcagggtctttccctcttcaacaagcatgctcaaaggtggttccggccattgctagatatgggattgaccctaccacccctgaagacaagaaaaggcatatcattcattcactttgcaatcctctcgcggattccctcttgggttctcaagacagcttgacttctggagctgccctttgcttaaaggctcttgtggattcggaaaattggcgttttgcttcagatgagatggttaataaggtttgtcagaatgtttctggggctttggaggagaaatctactcagtcgaatgcacatatgggtctggtcatgtctcttgcaaagcgtaatgctataatagttgaaccatacgctaggttgttgatacatgctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0006950 GO:0006952 GO:0006955 GO:0008092 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0012505 GO:0031967 GO:0031975 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0061760 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

20.95

Weight (kDa)

8.58

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003221)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54385 AT1G54385 AT1G54385 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970 AT3G03970
fragaria_vesca	FvH4_1g28060 FvH4_1g28060 FvH4_1g28060 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880 FvH4_5g28880
malus_domestica	MD12G1002800.v1.1 MD12G1002900.v1.1 MD12G1003000.v1.1 MD14G1002300.v1.1
prunus_persica	Prupe.7G003500_v2.0.a1 Prupe.7G003500_v2.0.a1
pyrus_communis	pycom03g08170 pycom12g00260
rosa_chinensis	RchiOBHm_Chr3g0497191
rosa_laevigata	RLG00000022472
rosa_multiflora	Rmu_co8084920.1_g000001 Rmu_sc0002893.1_g000012 Rmu_sc0007568.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388290
rosa_rugosa	Rorug03G0291700
rosa_samantha	Rh3AG335000 Rh3BG372700 Rh3CG369100 Rh3DG370000
rosa_wichuraiana	Rw3G029450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	338
AciI	CCGC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	255
AcuI	CTGAAG	2 cut(s)	312, 414
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	3 cut(s)	97, 230, 554
AluBI	AGCT	2 cut(s)	366, 380
AluI	AGCT	2 cut(s)	366, 380
Alw26I	GTCTC	1 cut(s)	528
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	380
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspS9I	GGNCC	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	89
BauI	CACGAG	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	433
BcgI	CGANNNNNNTGC	2 cut(s)	316, 350
BcoDI	GTCTC	1 cut(s)	528
BfaI	CTAG	2 cut(s)	264, 564
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	183
BmuI	ACTGGG	1 cut(s)	67
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	39
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	1 cut(s)	258
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	1 cut(s)	367
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	1 cut(s)	257
BsiSI	CCGG	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	528
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	110, 505
BsnI	GGCC	1 cut(s)	257
BspACI	CCGC	1 cut(s)	338
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	39
Bst2BI	CACGAG	1 cut(s)	135
Bst6I	CTCTTC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	492
BstFNI	CGCG	1 cut(s)	338
BstMAI	GTCTC	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	240, 581
BstPAI	GACNNNNGTC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	338
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	257
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	238
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	5 cut(s)	143, 178, 237, 520, 578
CviJI	RGCY	5 cut(s)	257, 366, 380, 398, 473
CviKI_1	RGCY	5 cut(s)	257, 366, 380, 398, 473
DdeI	CTNAG	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	2 cut(s)	312, 414
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	5 cut(s)	146, 181, 240, 523, 581
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	5 cut(s)	142, 177, 236, 519, 577
FauNDI	CATATG	1 cut(s)	507
Fnu4HI	GCNGC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	264, 564
GluI	GCNGC	1 cut(s)	381
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	254
Hin1II	CATG	5 cut(s)	146, 181, 240, 523, 581
HinfI	GANTC	4 cut(s)	35, 83, 341, 407
HpaII	CCGG	1 cut(s)	254
Hpy188I	TCNGA	3 cut(s)	412, 433, 459
Hpy188III	TCNNGA	3 cut(s)	193, 359, 375
HpyCH4V	TGCA	5 cut(s)	108, 212, 327, 503, 530
HpyF3I	CTNAG	1 cut(s)	492
Hsp92II	CATG	5 cut(s)	146, 181, 240, 523, 581
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	9 cut(s)	72, 86, 198, 267, 303, 360, 453, 500, 567
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	183
MaeI	CTAG	2 cut(s)	264, 564
MboII	GAAGA	2 cut(s)	218, 305
MluCI	AATT	1 cut(s)	415
MlyI	GAGTC	2 cut(s)	29, 77
MnlI	CCTC	5 cut(s)	171, 234, 342, 356, 472
MseI	TTAA	2 cut(s)	392, 444
MspI	CCGG	1 cut(s)	254
Mva1269I	GAATGC	2 cut(s)	110, 505
MvnI	CGCG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	507
NlaIII	CATG	5 cut(s)	146, 181, 240, 523, 581
NlaIV	GGNNCC	1 cut(s)	252
NspI	RCATGY	2 cut(s)	240, 581
PaeI	GCATGC	1 cut(s)	240
PctI	GAATGC	2 cut(s)	110, 505
PfeI	GAWTC	2 cut(s)	341, 407
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	29, 77
PpsI	GAGTC	2 cut(s)	29, 77
PshAI	GACNNNNGTC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	392, 444
SatI	GCNGC	1 cut(s)	381
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	29, 77
SetI	ASST	5 cut(s)	249, 368, 382, 453, 569
SfaNI	GCATC	1 cut(s)	183
SinI	GGWCC	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
SphI	GCATGC	1 cut(s)	240
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	338
SspMI	CTAG	2 cut(s)	264, 564
StyI	CCWWGG	1 cut(s)	39
TaqI	TCGA	2 cut(s)	206, 497
TasI	AATT	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	341, 407
Tru1I	TTAA	2 cut(s)	392, 444
Tru9I	TTAA	2 cut(s)	392, 444
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	1 cut(s)	380
TspDTI	ATGAA	4 cut(s)	17, 131, 138, 305
TspRI	CASTG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	89
XceI	RCATGY	2 cut(s)	240, 581
XspI	CTAG	2 cut(s)	264, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.