AT1G55300

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004745
Physical Location & Seq
Reverse (-)
20627907 .. 20629692
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55300.2

Sequence Viewer

Length: 612 bp
ATGGAAGAACAGTTCATACTTAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTAAGCGAGGATGCTTCTACTTCCGACGAAATCCCTTTGGATTTGTTTTTTTCAGAGGATGGGAGAAACGGGACGTTTATGATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTTTAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGATGATCATGGTTAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATACAGACATGGTCTAACTCCTCCAATGAAGGATGCTCGAAAGAGGAGATTTCGTCGAGAGCCTGACCTTAATCCGGAGCTTGTACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTACATGAGCAAGAGGAACCAGCTACGAACGAGAATGCTAGTAATGCAAGTAAGAAAGTATCTTCTTCTTCACCTACACCTGTTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAATCCAACAGGAGTTGAACCGGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

203

Amino Acids

22.49

Weight (kDa)

4.38

Isoelectric Point (pI)

61.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 1 - 138 2.7e-30 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 370
AciI CCGC 2 cut(s) 385, 420
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 549
AfaI GTAC 2 cut(s) 381, 438
AfiI CCNNNNNNNGG 2 cut(s) 370, 542
AgsI TTSAA 5 cut(s) 296, 406, 521, 569, 606
AhlI ACTAGT 1 cut(s) 548
AjnI CCWGG 1 cut(s) 268
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 376, 458, 533
AluI AGCT 3 cut(s) 376, 458, 533
Alw26I GTCTC 2 cut(s) 390, 533
AlwI GGATC 1 cut(s) 269
Aor13HI TCCGGA 1 cut(s) 370
AspLEI GCGC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 284, 498
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 390, 533
BcuI ACTAGT 1 cut(s) 548
BfaI CTAG 2 cut(s) 474, 549
BfmI CTRYAG 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 161, 270
BmiI GGNNCC 3 cut(s) 27, 267, 453
BmrFI CCNGG 2 cut(s) 161, 270
BmsI GCATC 2 cut(s) 61, 319
BpuMI CCSGG 1 cut(s) 161
BsaWI WCCGGW 2 cut(s) 370, 571
BsaXI ACNNNNNCTCC 2 cut(s) 334, 364
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 542
BseAI TCCGGA 1 cut(s) 370
BseBI CCWGG 1 cut(s) 270
BseGI GGATG 3 cut(s) 76, 124, 334
BseLI CCNNNNNNNGG 2 cut(s) 370, 542
BseMII CTCAG 1 cut(s) 528
BseRI GAGGAG 2 cut(s) 306, 355
BsiSI CCGG 3 cut(s) 161, 371, 572
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 370, 542
BsmAI GTCTC 2 cut(s) 390, 533
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 475
Bsp13I TCCGGA 1 cut(s) 370
Bsp1407I TGTACA 2 cut(s) 379, 436
Bsp143I GATC 4 cut(s) 52, 175, 252, 274
BspACI CCGC 2 cut(s) 385, 420
BspCNI CTCAG 1 cut(s) 529
BspEI TCCGGA 1 cut(s) 370
BspLI GGNNCC 3 cut(s) 27, 267, 453
BspMAI CTGCAG 1 cut(s) 187
BspPI GGATC 1 cut(s) 269
BsrGI TGTACA 2 cut(s) 379, 436
BssMI GATC 4 cut(s) 52, 175, 252, 274
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 4 cut(s) 12, 33, 292, 427
BstAUI TGTACA 2 cut(s) 379, 436
BstDEI CTNAG 2 cut(s) 20, 537
BstENI CCTNNNNNAGG 1 cut(s) 540
BstF5I GGATG 3 cut(s) 76, 124, 334
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 4 cut(s) 55, 178, 255, 277
BstMAI GTCTC 2 cut(s) 390, 533
BstMBI GATC 4 cut(s) 52, 175, 252, 274
BstMWI GCNNNNNNNGC 2 cut(s) 382, 479
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 159, 268
BstSFI CTRYAG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 76, 124, 334
CfoI GCGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 380, 437
CviAII CATG 3 cut(s) 256, 305, 440
CviJI RGCY 8 cut(s) 58, 164, 268, 358, 376, 458, 526, 533
CviKI_1 RGCY 8 cut(s) 58, 164, 268, 358, 376, 458, 526, 533
CviQI GTAC 2 cut(s) 380, 437
DdeI CTNAG 2 cut(s) 20, 537
DpnI GATC 4 cut(s) 54, 177, 254, 276
DpnII GATC 4 cut(s) 52, 175, 252, 274
DraI TTTAAA 1 cut(s) 202
EciI GGCGGA 1 cut(s) 435
Eco57I CTGAAG 1 cut(s) 549
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 268
FaeI CATG 3 cut(s) 259, 308, 443
FaiI YATR 7 cut(s) 17, 140, 210, 257, 306, 410, 441
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 255, 304, 439
FauI CCCGC 1 cut(s) 378
FbaI TGATCA 1 cut(s) 252
FokI GGATG 3 cut(s) 83, 131, 341
FspBI CTAG 2 cut(s) 474, 549
GlaI GCGC 1 cut(s) 282
HapII CCGG 3 cut(s) 161, 371, 572
HhaI GCGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 259, 308, 443
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HinfI GANTC 4 cut(s) 194, 584, 593, 602
HpaII CCGG 3 cut(s) 161, 371, 572
HphI GGTGA 2 cut(s) 284, 498
Hpy188I TCNGA 5 cut(s) 43, 85, 115, 589, 598
Hpy188III TCNNGA 3 cut(s) 353, 371, 536
Hpy99I CGWCG 3 cut(s) 89, 155, 354
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 4 cut(s) 12, 33, 292, 427
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 3 cut(s) 185, 221, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 479
HpyF3I CTNAG 2 cut(s) 20, 537
HpySE526I ACGT 1 cut(s) 134
Hsp92II CATG 3 cut(s) 259, 308, 443
HspAI GCGC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 52, 175, 252, 274
LmnI GCTCC 3 cut(s) 265, 373, 538
LweI GCATC 2 cut(s) 61, 319
MaeI CTAG 2 cut(s) 474, 549
MaeII ACGT 1 cut(s) 134
MalI GATC 4 cut(s) 54, 177, 254, 276
MboI GATC 4 cut(s) 52, 175, 252, 274
MboII GAAGA 5 cut(s) 17, 489, 492, 495, 602
MluCI AATT 1 cut(s) 48
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 2 cut(s) 108, 581
MnlI CCTC 5 cut(s) 61, 109, 327, 333, 442
MroI TCCGGA 1 cut(s) 370
MseI TTAA 3 cut(s) 62, 201, 366
MspA1I CMGCKG 1 cut(s) 385
MspI CCGG 3 cut(s) 161, 371, 572
MspR9I CCNGG 2 cut(s) 161, 270
Mva1269I GAATGC 1 cut(s) 475
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 382, 479
NciI CCSGG 1 cut(s) 161
NdeII GATC 4 cut(s) 52, 175, 252, 274
NlaIII CATG 3 cut(s) 259, 308, 443
NlaIV GGNNCC 3 cut(s) 27, 267, 453
PctI GAATGC 1 cut(s) 475
PfeI GAWTC 3 cut(s) 584, 593, 602
PflFI GACNNNGTC 1 cut(s) 306
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 27, 267, 453
PsrI GAACNNNNNNTAC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 306
RsaI GTAC 2 cut(s) 381, 438
RsaNI GTAC 2 cut(s) 380, 437
SaqAI TTAA 3 cut(s) 62, 201, 366
Sau3AI GATC 4 cut(s) 52, 175, 252, 274
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 161, 270
SetI ASST 7 cut(s) 137, 366, 378, 460, 511, 517, 535
SfaNI GCATC 2 cut(s) 61, 319
SfcI CTRYAG 1 cut(s) 183
SpeI ACTAGT 1 cut(s) 548
Sse9I AATT 1 cut(s) 48
SsiI CCGC 2 cut(s) 385, 420
SspMI CTAG 2 cut(s) 474, 549
StyD4I CCNGG 2 cut(s) 159, 268
TaaI ACNGT 4 cut(s) 12, 33, 292, 427
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 334, 352
TasI AATT 1 cut(s) 48
TatI WGTACW 2 cut(s) 379, 436
TfiI GAWTC 3 cut(s) 584, 593, 602
Tru1I TTAA 3 cut(s) 62, 201, 366
Tru9I TTAA 3 cut(s) 62, 201, 366
TspDTI ATGAA 2 cut(s) 4, 338
Tth111I GACNNNGTC 1 cut(s) 306
XagI CCTNNNNNAGG 1 cut(s) 540
XspI CTAG 2 cut(s) 474, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.