Rw4G027060

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004745
Physical Location & Seq
Forward (+)
53333028 .. 53334952
1925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027060.1

Sequence Viewer

Length: 591 bp
ATGGAGGAGCAATTCGTACTCAGAGTCCCACCTTCAGTTGCAGAGAGATTAGATCGTCTTCTCAGCGAGAATGCTTCTTCAGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCGATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCTGAGCTTGTCCAGCGTGTTGAGCAAGATCTGCTGAACATTAGTGCTGGTGGACCAGCTGACAATCAAGAGAAAAATCGAGATGGCAAGGCTGGTAATACAAGTAAAAACCCTGCACCAGCACCTGAATCAAAAACTGATATTCCTGAGGCTGCTACAAACACAGGGGAGCCTGATGGAGAGCCTGATAGAAGTGATTCGGATGAATCGGACGATTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

196

Amino Acids

21.65

Weight (kDa)

4.39

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 1 - 133 1.4e-32 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 180, 257, 266
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 18, 63
AfaI GTAC 2 cut(s) 18, 296
AgeI ACCGGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 585
AhdI GACNNNNNGTC 1 cut(s) 88
AluBI AGCT 2 cut(s) 373, 425
AluI AGCT 2 cut(s) 373, 425
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 3 cut(s) 180, 257, 266
AlwNI CAGNNNCTG 1 cut(s) 491
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 518
AsiGI ACCGGT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 562
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 505
BccI CCATC 3 cut(s) 110, 443, 536
BcoDI GTCTC 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 231
BglII AGATCT 1 cut(s) 394
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme18I GGWCC 1 cut(s) 419
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 3 cut(s) 155, 354, 537
BmsI GCATC 2 cut(s) 170, 316
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 363
BseGI GGATG 3 cut(s) 121, 331, 574
BseJI GATNNNNATC 1 cut(s) 363
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 4 cut(s) 34, 76, 360, 504
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 505
BsgI GTGCAG 1 cut(s) 465
BshFI GGCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 150
BsiSI CCGG 2 cut(s) 121, 151
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 6 cut(s) 52, 172, 262, 271, 358, 394
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 4 cut(s) 33, 75, 361, 505
BspLI GGNNCC 3 cut(s) 155, 354, 537
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 3 cut(s) 180, 257, 266
BspT104I TTCGAA 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssMI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
Bst4CI ACNGT 2 cut(s) 184, 289
Bst6I CTCTTC 1 cut(s) 105
BstAPI GCANNNNNTGC 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 4 cut(s) 20, 62, 369, 513
BstF5I GGATG 3 cut(s) 121, 331, 574
BstKTI GATC 6 cut(s) 55, 175, 265, 274, 361, 397
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
BstMWI GCNNNNNNNGC 3 cut(s) 379, 388, 397
BstSFI CTRYAG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 3 cut(s) 172, 262, 394
BstYI RGATCY 3 cut(s) 172, 262, 394
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 3 cut(s) 121, 331, 574
CaiI CAGNNNCTG 1 cut(s) 491
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 17, 295
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 1 cut(s) 302
CviJI RGCY 8 cut(s) 120, 355, 373, 425, 458, 518, 538, 550
CviKI_1 RGCY 8 cut(s) 120, 355, 373, 425, 458, 518, 538, 550
CviQI GTAC 2 cut(s) 17, 295
DdeI CTNAG 4 cut(s) 20, 62, 369, 513
DpnI GATC 6 cut(s) 54, 174, 264, 273, 360, 396
DpnII GATC 6 cut(s) 52, 172, 262, 271, 358, 394
DriI GACNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 311
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 2 cut(s) 18, 63
Eco81I CCTNAGG 1 cut(s) 513
FaeI CATG 1 cut(s) 305
FaiI YATR 3 cut(s) 207, 254, 303
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 3 cut(s) 128, 338, 581
Fsp4HI GCNGC 1 cut(s) 519
GluI GCNGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 121, 151
Hin1II CATG 1 cut(s) 305
HinfI GANTC 6 cut(s) 24, 191, 494, 563, 572, 581
HpaII CCGG 2 cut(s) 121, 151
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 6 cut(s) 23, 82, 246, 318, 568, 577
Hpy188III TCNNGA 5 cut(s) 281, 368, 434, 446, 512
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 184, 289
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 41, 161, 233, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 379, 388, 397
HpyF3I CTNAG 4 cut(s) 20, 62, 369, 513
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 6 cut(s) 52, 172, 262, 271, 358, 394
LmnI GCTCC 4 cut(s) 7, 283, 352, 535
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 2 cut(s) 170, 316
MaeII ACGT 1 cut(s) 203
MalI GATC 6 cut(s) 54, 174, 264, 273, 360, 396
MboI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
MboII GAAGA 5 cut(s) 50, 69, 122, 167, 351
MflI RGATCY 3 cut(s) 172, 262, 394
MluCI AATT 4 cut(s) 11, 138, 222, 585
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 4 cut(s) 106, 315, 324, 508
MroXI GAANNNNTTC 1 cut(s) 562
MseI TTAA 2 cut(s) 221, 225
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 121, 151
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 3 cut(s) 379, 388, 397
NdeII GATC 6 cut(s) 52, 172, 262, 271, 358, 394
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 3 cut(s) 155, 354, 537
NspV TTCGAA 1 cut(s) 108
PacI TTAATTAA 1 cut(s) 225
PctI GAATGC 1 cut(s) 76
PdmI GAANNNNTTC 1 cut(s) 562
PfeI GAWTC 5 cut(s) 191, 494, 563, 572, 581
PinAI ACCGGT 1 cut(s) 150
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspN4I GGNNCC 3 cut(s) 155, 354, 537
PspPI GGNCC 1 cut(s) 419
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 491
PsuI RGATCY 3 cut(s) 172, 262, 394
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 18, 296
RsaNI GTAC 2 cut(s) 17, 295
SaqAI TTAA 2 cut(s) 221, 225
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 33
SetI ASST 5 cut(s) 34, 206, 375, 427, 493
SfaNI GCATC 2 cut(s) 170, 316
SfcI CTRYAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 1 cut(s) 419
Sse9I AATT 4 cut(s) 11, 138, 222, 585
TaaI ACNGT 2 cut(s) 184, 289
TaiI ACGT 1 cut(s) 206
TaqI TCGA 3 cut(s) 108, 331, 445
TasI AATT 4 cut(s) 11, 138, 222, 585
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 5 cut(s) 191, 494, 563, 572, 581
Tru1I TTAA 2 cut(s) 221, 225
Tru9I TTAA 2 cut(s) 221, 225
TseI GCWGC 1 cut(s) 518
TspDTI ATGAA 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.