Transcription initiation factor TFIID subunit
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55300 AT1G55300 |
| fragaria_vesca | FvH4_3g45340 FvH4_3g45340 |
| malus_domestica | MD03G1005700.v1.1 MD11G1008600.v1.1 |
| prunus_persica | Prupe.6G007100_v2.0.a1 Prupe.6G007100_v2.0.a1 Prupe.6G007100_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0431981 RchiOBHm_Chr5g0083141 |
| rosa_laevigata | RLG00000009301 RLG00000037014 |
| rosa_multiflora | Rmu_ssc0000026.1_g000006 |
| rosa_roxburghii | Rroxscaffold_1G00001370 Rroxscaffold_5G00345050 Rroxscaffold_5G00373440 |
| rosa_rugosa | Rorug04G0253900 Rorug04G0254000 Rorug04G0254000 Rorug04G0254000 Rorug05G0482500 Rorug05G0482600 |
| rosa_samantha | Rh4AG311000 Rh4BG318200 Rh4CG333500 Rh4DG313100 Rh5AG532200 Rh5DG568100 |
| rosa_wichuraiana | Rw4G027060 Rw5G049620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 55, 275 |
| AclWI | GGATC | 2 cut(s) | 180, 573 |
| AfaI | GTAC | 2 cut(s) | 18, 296 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AgsI | TTSAA | 2 cut(s) | 199, 443 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 88 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 3 cut(s) | 373, 425, 449 |
| AluI | AGCT | 3 cut(s) | 373, 425, 449 |
| AlwI | GGATC | 2 cut(s) | 180, 573 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 542 |
| AoxI | GGCC | 1 cut(s) | 419 |
| ApeKI | GCWGC | 2 cut(s) | 446, 542 |
| AspS9I | GGNCC | 1 cut(s) | 419 |
| AsuII | TTCGAA | 1 cut(s) | 108 |
| BbvI | GCAGC | 2 cut(s) | 458, 529 |
| BccI | CCATC | 3 cut(s) | 110, 458, 464 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 118, 152 |
| BfmI | CTRYAG | 1 cut(s) | 231 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 63 |
| BglII | AGATCT | 1 cut(s) | 394 |
| BisI | GCNGC | 3 cut(s) | 276, 447, 543 |
| BlpI | GCTNAGC | 1 cut(s) | 450 |
| BlsI | GCNGC | 3 cut(s) | 277, 448, 544 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 88 |
| BmgT120I | GGNCC | 1 cut(s) | 419 |
| BmiI | GGNNCC | 3 cut(s) | 279, 354, 561 |
| BmsI | GCATC | 3 cut(s) | 170, 262, 316 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 313, 345 |
| BpmI | CTGGAG | 1 cut(s) | 264 |
| Bpu10I | CCTNAGC | 1 cut(s) | 369 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 450 |
| Bpu14I | TTCGAA | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 1 cut(s) | 363 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| Bse1I | ACTGG | 1 cut(s) | 130 |
| Bse8I | GATNNNNATC | 1 cut(s) | 363 |
| BseGI | GGATG | 3 cut(s) | 121, 331, 469 |
| BseJI | GATNNNNATC | 1 cut(s) | 363 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMII | CTCAG | 3 cut(s) | 34, 360, 441 |
| BseNI | ACTGG | 1 cut(s) | 130 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 2 cut(s) | 458, 529 |
| BseYI | CCCAGC | 1 cut(s) | 554 |
| BshFI | GGCC | 1 cut(s) | 421 |
| BsiSI | CCGG | 2 cut(s) | 379, 563 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 421 |
| Bsp119I | TTCGAA | 1 cut(s) | 108 |
| Bsp143I | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 450 |
| BspACI | CCGC | 2 cut(s) | 55, 275 |
| BspANI | GGCC | 1 cut(s) | 421 |
| BspCNI | CTCAG | 3 cut(s) | 33, 361, 442 |
| BspLI | GGNNCC | 3 cut(s) | 279, 354, 561 |
| BspMAI | CTGCAG | 1 cut(s) | 235 |
| BspPI | GGATC | 2 cut(s) | 180, 573 |
| BspT104I | TTCGAA | 1 cut(s) | 108 |
| BsrI | ACTGG | 1 cut(s) | 130 |
| BssMI | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| Bst4CI | ACNGT | 2 cut(s) | 152, 289 |
| Bst6I | CTCTTC | 1 cut(s) | 105 |
| BstBI | TTCGAA | 1 cut(s) | 108 |
| BstC8I | GCNNGC | 1 cut(s) | 423 |
| BstDEI | CTNAG | 3 cut(s) | 20, 369, 450 |
| BstF5I | GGATG | 3 cut(s) | 121, 331, 469 |
| BstKTI | GATC | 5 cut(s) | 175, 361, 397, 481, 568 |
| BstMBI | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 63, 126, 379, 551 |
| BstSFI | CTRYAG | 1 cut(s) | 231 |
| BstV1I | GCAGC | 2 cut(s) | 458, 529 |
| BstX2I | RGATCY | 2 cut(s) | 172, 394 |
| BstYI | RGATCY | 2 cut(s) | 172, 394 |
| BsuRI | GGCC | 1 cut(s) | 421 |
| BtgZI | GCGATG | 1 cut(s) | 147 |
| BtsCI | GGATG | 3 cut(s) | 121, 331, 469 |
| BtsIMutI | CAGTG | 1 cut(s) | 294 |
| Cac8I | GCNNGC | 1 cut(s) | 423 |
| CaiI | CAGNNNCTG | 1 cut(s) | 542 |
| Cfr13I | GGNCC | 1 cut(s) | 419 |
| Csp6I | GTAC | 2 cut(s) | 17, 295 |
| CviAII | CATG | 1 cut(s) | 302 |
| CviJI | RGCY | 9 cut(s) | 278, 355, 373, 421, 425, 449, 499, 542, 562 |
| CviKI_1 | RGCY | 9 cut(s) | 278, 355, 373, 421, 425, 449, 499, 542, 562 |
| CviQI | GTAC | 2 cut(s) | 17, 295 |
| DdeI | CTNAG | 3 cut(s) | 20, 369, 450 |
| DpnI | GATC | 5 cut(s) | 174, 360, 396, 480, 567 |
| DpnII | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| DriI | GACNNNNNGTC | 1 cut(s) | 88 |
| Eam1104I | CTCTTC | 1 cut(s) | 105 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 88 |
| EarI | CTCTTC | 1 cut(s) | 105 |
| FaeI | CATG | 1 cut(s) | 305 |
| FaiI | YATR | 4 cut(s) | 205, 207, 254, 303 |
| FatI | CATG | 1 cut(s) | 301 |
| FauNDI | CATATG | 1 cut(s) | 205 |
| Fnu4HI | GCNGC | 3 cut(s) | 276, 447, 543 |
| FokI | GGATG | 3 cut(s) | 128, 338, 476 |
| Fsp4HI | GCNGC | 3 cut(s) | 276, 447, 543 |
| GluI | GCNGC | 3 cut(s) | 276, 447, 543 |
| GsaI | CCCAGC | 1 cut(s) | 558 |
| GsuI | CTGGAG | 1 cut(s) | 264 |
| HaeIII | GGCC | 1 cut(s) | 421 |
| HapII | CCGG | 2 cut(s) | 379, 563 |
| Hin1II | CATG | 1 cut(s) | 305 |
| HinfI | GANTC | 5 cut(s) | 191, 263, 575, 584, 593 |
| HpaII | CCGG | 2 cut(s) | 379, 563 |
| Hpy188I | TCNGA | 5 cut(s) | 23, 246, 348, 580, 589 |
| Hpy188III | TCNNGA | 2 cut(s) | 281, 368 |
| Hpy99I | CGWCG | 1 cut(s) | 593 |
| HpyAV | CCTTC | 3 cut(s) | 42, 205, 454 |
| HpyCH4III | ACNGT | 2 cut(s) | 152, 289 |
| HpyCH4V | TGCA | 4 cut(s) | 41, 161, 233, 488 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 63, 126, 379, 551 |
| HpyF3I | CTNAG | 3 cut(s) | 20, 369, 450 |
| Hsp92II | CATG | 1 cut(s) | 305 |
| Kzo9I | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| LmnI | GCTCC | 4 cut(s) | 7, 283, 352, 559 |
| Lsp1109I | GCAGC | 2 cut(s) | 458, 529 |
| LweI | GCATC | 3 cut(s) | 170, 262, 316 |
| MaeIII | GTNAC | 1 cut(s) | 532 |
| MalI | GATC | 5 cut(s) | 174, 360, 396, 480, 567 |
| MboI | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| MboII | GAAGA | 6 cut(s) | 122, 167, 351, 404, 518, 521 |
| MflI | RGATCY | 2 cut(s) | 172, 394 |
| MluCI | AATT | 2 cut(s) | 222, 597 |
| MlyI | GAGTC | 3 cut(s) | 200, 569, 602 |
| MmeI | TCCRAC | 3 cut(s) | 75, 121, 150 |
| MnlI | CCTC | 6 cut(s) | 106, 315, 324, 342, 382, 532 |
| MseI | TTAA | 2 cut(s) | 221, 225 |
| MspA1I | CMGCKG | 2 cut(s) | 425, 449 |
| MspI | CCGG | 2 cut(s) | 379, 563 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 63, 126, 379, 551 |
| NdeI | CATATG | 1 cut(s) | 205 |
| NdeII | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| NlaIII | CATG | 1 cut(s) | 305 |
| NlaIV | GGNNCC | 3 cut(s) | 279, 354, 561 |
| NspV | TTCGAA | 1 cut(s) | 108 |
| PacI | TTAATTAA | 1 cut(s) | 225 |
| PfeI | GAWTC | 2 cut(s) | 263, 584 |
| PkrI | GCNGC | 3 cut(s) | 277, 448, 544 |
| PleI | GAGTC | 3 cut(s) | 199, 569, 601 |
| PpsI | GAGTC | 3 cut(s) | 199, 569, 601 |
| PspFI | CCCAGC | 1 cut(s) | 554 |
| PspN4I | GGNNCC | 3 cut(s) | 279, 354, 561 |
| PspPI | GGNCC | 1 cut(s) | 419 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 9, 41 |
| PstI | CTGCAG | 1 cut(s) | 235 |
| PstNI | CAGNNNCTG | 1 cut(s) | 542 |
| PsuI | RGATCY | 2 cut(s) | 172, 394 |
| PvuII | CAGCTG | 2 cut(s) | 425, 449 |
| RsaI | GTAC | 2 cut(s) | 18, 296 |
| RsaNI | GTAC | 2 cut(s) | 17, 295 |
| SaqAI | TTAA | 2 cut(s) | 221, 225 |
| SatI | GCNGC | 3 cut(s) | 276, 447, 543 |
| Sau3AI | GATC | 5 cut(s) | 172, 358, 394, 478, 565 |
| Sau96I | GGNCC | 1 cut(s) | 419 |
| SchI | GAGTC | 3 cut(s) | 200, 569, 602 |
| SetI | ASST | 6 cut(s) | 34, 375, 427, 451, 517, 529 |
| SfaNI | GCATC | 3 cut(s) | 170, 262, 316 |
| SfcI | CTRYAG | 1 cut(s) | 231 |
| SfuI | TTCGAA | 1 cut(s) | 108 |
| Sse9I | AATT | 2 cut(s) | 222, 597 |
| SsiI | CCGC | 2 cut(s) | 55, 275 |
| SspI | AATATT | 1 cut(s) | 433 |
| TaaI | ACNGT | 2 cut(s) | 152, 289 |
| TaqI | TCGA | 4 cut(s) | 108, 266, 331, 568 |
| TasI | AATT | 2 cut(s) | 222, 597 |
| TatI | WGTACW | 1 cut(s) | 294 |
| TauI | GCSGC | 1 cut(s) | 278 |
| TfiI | GAWTC | 2 cut(s) | 263, 584 |
| Tru1I | TTAA | 2 cut(s) | 221, 225 |
| Tru9I | TTAA | 2 cut(s) | 221, 225 |
| TscAI | CASTG | 1 cut(s) | 294 |
| TseI | GCWGC | 2 cut(s) | 446, 542 |
| TspDTI | ATGAA | 1 cut(s) | 597 |
| TspGWI | ACGGA | 1 cut(s) | 25 |
| TspRI | CASTG | 1 cut(s) | 294 |