MD11G1008600.v1.1

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004745
Physical Location & Seq
Reverse (-)
730529 .. 733201
2673 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1008600.v1.1.491

Sequence Viewer

Length: 528 bp
ATGCTGATCCGGTGCCGTTTTGTGGCAGTGATGGAGGAGCAGTTCGTGCTCAGAGTCCCACCTTCTGTTGCAGAGCGACTGGACCGCCTTCTGGGCGACAACGCTTCTACTGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCAGGACTGGCACATTTGTCGTTGGCAATGACCATTTCCCTGCATCACTGTTTGATCTTCCTTGTGTTGTGGAGTCCTTCAAAACATATGATGATAGCGTGTTAATTAAGACTGCAGACATTGGTCAGATGATTATGGTTAGAGATCCGAGTGATCCAGCTCCAGATACAGTAGAGTACAGGCATGGTCTCACCCCTCCAATGAGGGATGCTCGAAAGCGAAGGTTTCGCAGGGAACCTGATCTCAATCCTGAGCTTGTCCGGCGTGTTGAGGAAGATCTACTGAATATTAGTACAAGCGGACCAGCTGATAATATTGATATCCTCACATATTATGTTTCATTACTTTCTTGTTATCGGTTTGTGCAAAAGGCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

176

Amino Acids

19.94

Weight (kDa)

4.82

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 11 - 142 3.5e-32 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 12
AciI CCGC 2 cut(s) 85, 447
AclWI GGATC 2 cut(s) 287, 296
AfaI GTAC 2 cut(s) 326, 442
AfiI CCNNNNNNNGG 2 cut(s) 22, 91
AgsI TTSAA 1 cut(s) 229
AhdI GACNNNNNGTC 1 cut(s) 118
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 308, 403, 455
AluI AGCT 3 cut(s) 308, 403, 455
Alw21I GWGCWC 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 341
AlwI GGATC 2 cut(s) 287, 296
AspS9I GGNCC 2 cut(s) 82, 449
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 138
AvaII GGWCC 2 cut(s) 82, 449
BanI GGYRCC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 51
BccI CCATC 2 cut(s) 25, 140
BcgI CGANNNNNNTGC 2 cut(s) 148, 182
BcoDI GTCTC 1 cut(s) 341
BfmI CTRYAG 1 cut(s) 261
BglI GCCNNNNNGGC 1 cut(s) 93
BglII AGATCT 1 cut(s) 424
Bme18I GGWCC 2 cut(s) 82, 449
BmeRI GACNNNNNGTC 1 cut(s) 118
BmgT120I GGNCC 2 cut(s) 82, 449
BmiI GGNNCC 2 cut(s) 14, 384
BmsI GCATC 2 cut(s) 200, 346
BoxI GACNNNNGTC 1 cut(s) 270
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 399
Bpu14I TTCGAA 1 cut(s) 138
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 9
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 91
Bse1I ACTGG 2 cut(s) 84, 160
Bse3DI GCAATG 1 cut(s) 181
Bse8I GATNNNNATC 1 cut(s) 393
BseGI GGATG 2 cut(s) 151, 361
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 22, 91
BseMI GCAATG 1 cut(s) 181
BseMII CTCAG 2 cut(s) 64, 390
BseNI ACTGG 2 cut(s) 84, 160
BseRI GAGGAG 1 cut(s) 50
BshNI GGYRCC 1 cut(s) 12
BsiHKAI GWGCWC 1 cut(s) 51
BsiSI CCGG 2 cut(s) 10, 409
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 2 cut(s) 22, 91
BsmAI GTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 6 cut(s) 6, 202, 292, 301, 388, 424
BspACI CCGC 2 cut(s) 85, 447
BspCNI CTCAG 2 cut(s) 63, 391
BspLI GGNNCC 2 cut(s) 14, 384
BspMAI CTGCAG 1 cut(s) 265
BspPI GGATC 2 cut(s) 287, 296
BspT104I TTCGAA 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 341
BsrDI GCAATG 1 cut(s) 181
BsrI ACTGG 2 cut(s) 84, 160
BssMI GATC 6 cut(s) 6, 202, 292, 301, 388, 424
Bst4CI ACNGT 2 cut(s) 198, 319
Bst6I CTCTTC 1 cut(s) 135
BstAPI GCANNNNNTGC 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 50, 399
BstF5I GGATG 2 cut(s) 151, 361
BstKTI GATC 6 cut(s) 9, 205, 295, 304, 391, 427
BstMAI GTCTC 1 cut(s) 341
BstMBI GATC 6 cut(s) 6, 202, 292, 301, 388, 424
BstMWI GCNNNNNNNGC 4 cut(s) 46, 93, 156, 409
BstPAI GACNNNNGTC 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 261
BstX2I RGATCY 2 cut(s) 292, 424
BstYI RGATCY 2 cut(s) 292, 424
BtsCI GGATG 2 cut(s) 151, 361
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 194
Cfr13I GGNCC 2 cut(s) 82, 449
Csp6I GTAC 2 cut(s) 325, 441
CviAII CATG 1 cut(s) 332
CviJI RGCY 3 cut(s) 308, 403, 455
CviKI_1 RGCY 3 cut(s) 308, 403, 455
CviQI GTAC 2 cut(s) 325, 441
DdeI CTNAG 2 cut(s) 50, 399
DpnI GATC 6 cut(s) 8, 204, 294, 303, 390, 426
DpnII GATC 6 cut(s) 6, 202, 292, 301, 388, 424
DriI GACNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 135
Eam1105I GACNNNNNGTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 469
Eco47I GGWCC 2 cut(s) 82, 449
EcoRV GATATC 1 cut(s) 469
FaeI CATG 1 cut(s) 335
FaiI YATR 7 cut(s) 235, 237, 284, 333, 478, 483, 526
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 331
FauNDI CATATG 1 cut(s) 235
FokI GGATG 2 cut(s) 158, 368
GsuI CTGGAG 1 cut(s) 294
HapII CCGG 2 cut(s) 10, 409
Hin1II CATG 1 cut(s) 335
HinfI GANTC 2 cut(s) 54, 221
HpaII CCGG 2 cut(s) 10, 409
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 53, 276, 297
Hpy188III TCNNGA 2 cut(s) 311, 398
HpyAV CCTTC 4 cut(s) 72, 98, 235, 363
HpyCH4III ACNGT 2 cut(s) 198, 319
HpyCH4V TGCA 4 cut(s) 71, 191, 263, 514
HpyF10VI GCNNNNNNNGC 4 cut(s) 46, 93, 156, 409
HpyF3I CTNAG 2 cut(s) 50, 399
Hsp92II CATG 1 cut(s) 335
Kzo9I GATC 6 cut(s) 6, 202, 292, 301, 388, 424
LmnI GCTCC 2 cut(s) 37, 313
LweI GCATC 2 cut(s) 200, 346
MalI GATC 6 cut(s) 8, 204, 294, 303, 390, 426
MboI GATC 6 cut(s) 6, 202, 292, 301, 388, 424
MboII GAAGA 3 cut(s) 152, 197, 434
MflI RGATCY 2 cut(s) 292, 424
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 252
MlyI GAGTC 2 cut(s) 63, 230
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 6 cut(s) 28, 136, 345, 354, 412, 482
MseI TTAA 2 cut(s) 251, 255
MspA1I CMGCKG 1 cut(s) 455
MspI CCGG 2 cut(s) 10, 409
MwoI GCNNNNNNNGC 4 cut(s) 46, 93, 156, 409
NdeI CATATG 1 cut(s) 235
NdeII GATC 6 cut(s) 6, 202, 292, 301, 388, 424
NlaIII CATG 1 cut(s) 335
NlaIV GGNNCC 2 cut(s) 14, 384
NspV TTCGAA 1 cut(s) 138
PacI TTAATTAA 1 cut(s) 255
PleI GAGTC 2 cut(s) 62, 229
PpsI GAGTC 2 cut(s) 62, 229
PshAI GACNNNNGTC 1 cut(s) 270
PspN4I GGNNCC 2 cut(s) 14, 384
PspPI GGNCC 2 cut(s) 82, 449
PstI CTGCAG 1 cut(s) 265
PsuI RGATCY 2 cut(s) 292, 424
PvuII CAGCTG 1 cut(s) 455
RsaI GTAC 2 cut(s) 326, 442
RsaNI GTAC 2 cut(s) 325, 441
SaqAI TTAA 2 cut(s) 251, 255
Sau3AI GATC 6 cut(s) 6, 202, 292, 301, 388, 424
Sau96I GGNCC 2 cut(s) 82, 449
SchI GAGTC 2 cut(s) 63, 230
SduI GDGCHC 1 cut(s) 51
SetI ASST 6 cut(s) 64, 310, 374, 388, 405, 457
SfaNI GCATC 2 cut(s) 200, 346
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 138
SinI GGWCC 2 cut(s) 82, 449
Sse9I AATT 1 cut(s) 252
SsiI CCGC 2 cut(s) 85, 447
SspI AATATT 2 cut(s) 436, 463
TaaI ACNGT 2 cut(s) 198, 319
TaqI TCGA 2 cut(s) 138, 361
TasI AATT 1 cut(s) 252
TatI WGTACW 2 cut(s) 324, 440
Tru1I TTAA 2 cut(s) 251, 255
Tru9I TTAA 2 cut(s) 251, 255
TscAI CASTG 2 cut(s) 33, 201
TspDTI ATGAA 1 cut(s) 477
TspRI CASTG 2 cut(s) 33, 201
VpaK11BI GGWCC 2 cut(s) 82, 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.