Rorug05G0482600

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004745
Physical Location & Seq
Reverse (-)
66384512 .. 66385525
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0482600.1

Sequence Viewer

Length: 429 bp
ATGTCAATCATCCCAATCAACGAGCGACGAAGCAGTGACGTCGATCCCTGGGCTCTCGACCTCTGGGACCCATTCCTAGATTTCCCATTATTCCCTTCTTCACTCTCCAACGTTTTCCATGAACTCAATCCGGGTTTTCCCTCGGTGAATTCCCGGCTCGATTGGAGCGAGACCCGCAACGTCCACGTTCTTAAGGCAGCTCTTCCTGCGTTTGCCAACGAAGACGTGCTTGTTGAGCTTCAAGAAGACCGAGTGCTTCAGATTAGCACAGACAGTGGTAGCTTCATGACCAAGATTAAGCTCCCCGAGAACGCCAAGATTGAGGAGCTCAAGGCCTTTATGAGCAATGGGGTTGTTACTGTCACTGTTCCTAAGGGGGAGGCTGACAGGCCCAATGTCAGAGCCATTGAAATTTCTGGCGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

142

Amino Acids

15.88

Weight (kDa)

4.58

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 54 - 139 1.4e-12 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 42
AciI CCGC 1 cut(s) 175
AclI AACGTT 1 cut(s) 111
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 2 cut(s) 148, 411
AcuI CTGAAG 1 cut(s) 242
AcyI GRCGYC 1 cut(s) 39
AflII CTTAAG 1 cut(s) 191
AgsI TTSAA 2 cut(s) 242, 410
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 5 cut(s) 200, 238, 282, 301, 328
AluI AGCT 5 cut(s) 200, 238, 282, 301, 328
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 164
AlwI GGATC 1 cut(s) 38
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 2 cut(s) 333, 389
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 148, 411
AspS9I GGNCC 2 cut(s) 67, 390
AsuC2I CCSGG 2 cut(s) 132, 154
AsuHPI GGTGA 1 cut(s) 157
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 372
BanII GRGCYC 2 cut(s) 55, 330
BbsI GAAGAC 2 cut(s) 228, 252
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 49
BcnI CCSGG 2 cut(s) 132, 154
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 77
BfrI CTTAAG 1 cut(s) 191
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
Bme1390I CCNGG 3 cut(s) 49, 132, 154
Bme18I GGWCC 1 cut(s) 67
BmeT110I CYCGRG 1 cut(s) 305
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 2 cut(s) 67, 390
BmiI GGNNCC 2 cut(s) 68, 69
BmrFI CCNGG 3 cut(s) 49, 132, 154
BpiI GAAGAC 2 cut(s) 228, 252
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 2 cut(s) 132, 154
BsaHI GRCGYC 1 cut(s) 39
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 3 cut(s) 47, 48, 141
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 3 cut(s) 47, 48, 141
BseGI GGATG 1 cut(s) 9
BseMI GCAATG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 2 cut(s) 335, 391
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 2 cut(s) 131, 154
BslFI GGGAC 1 cut(s) 80
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 335, 391
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 305
Bsp1286I GDGCHC 2 cut(s) 55, 330
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 175
BspANI GGCC 2 cut(s) 335, 391
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 68, 69
BspPI GGATC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 207
BspTI CTTAAG 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 352
BssECI CCNNGG 3 cut(s) 47, 48, 141
BssMI GATC 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 49
Bst4CI ACNGT 3 cut(s) 275, 361, 367
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 39
BstAFI CTTAAG 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 164
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 3 cut(s) 174, 206, 235
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 3 cut(s) 47, 130, 152
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 2 cut(s) 228, 252
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 2 cut(s) 335, 391
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 9
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 3 cut(s) 40, 280, 363
CciI TCATGA 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 67, 390
CviAII CATG 2 cut(s) 119, 286
DdeI CTNAG 1 cut(s) 372
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 328
Eco147I AGGCCT 1 cut(s) 335
Eco24I GRGCYC 2 cut(s) 55, 330
Eco31I GGTCTC 1 cut(s) 164
Eco47I GGWCC 1 cut(s) 67
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 242
Eco81I CCTNAGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 148
EcoRII CCWGG 1 cut(s) 47
EcoT38I GRGCYC 2 cut(s) 55, 330
FaeI CATG 2 cut(s) 122, 289
FaiI YATR 3 cut(s) 120, 287, 341
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 118, 285
FauI CCCGC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 198
FriOI GRGCYC 2 cut(s) 55, 330
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 335, 391
HapII CCGG 2 cut(s) 131, 154
Hin1I GRCGYC 1 cut(s) 39
Hin1II CATG 2 cut(s) 122, 289
HpaII CCGG 2 cut(s) 131, 154
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 261, 401
Hpy188III TCNNGA 3 cut(s) 56, 242, 286
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 2 cut(s) 30, 44
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 3 cut(s) 275, 361, 367
HpyCH4IV ACGT 5 cut(s) 39, 111, 180, 186, 225
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 206, 235
HpyF3I CTNAG 1 cut(s) 372
HpySE526I ACGT 5 cut(s) 39, 111, 180, 186, 225
Hsp92I GRCGYC 1 cut(s) 39
Hsp92II CATG 2 cut(s) 122, 289
KflI GGGWCCC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 43
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 3 cut(s) 165, 306, 325
LpnPI CCDG 8 cut(s) 34, 49, 61, 144, 167, 219, 373, 402
Lsp1109I GCAGC 1 cut(s) 209
MaeI CTAG 1 cut(s) 77
MaeII ACGT 5 cut(s) 39, 111, 180, 186, 225
MaeIII GTNAC 3 cut(s) 35, 355, 361
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 4 cut(s) 90, 194, 233, 257
MhlI GDGCHC 2 cut(s) 55, 330
MluCI AATT 2 cut(s) 148, 411
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 71, 151, 316, 373
MseI TTAA 3 cut(s) 192, 297, 427
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 2 cut(s) 131, 154
MspR9I CCNGG 3 cut(s) 49, 132, 154
MvaI CCWGG 1 cut(s) 49
MwoI GCNNNNNNNGC 3 cut(s) 174, 206, 235
NciI CCSGG 2 cut(s) 132, 154
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 122, 289
NlaIV GGNNCC 2 cut(s) 68, 69
NmuCI GTSAC 2 cut(s) 35, 361
PagI TCATGA 1 cut(s) 285
PasI CCCWGGG 1 cut(s) 48
PceI AGGCCT 1 cut(s) 335
PciSI GCTCTTC 1 cut(s) 207
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PkrI GCNGC 1 cut(s) 199
PpuMI RGGWCCY 1 cut(s) 67
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 111
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
PspN4I GGNNCC 2 cut(s) 68, 69
PspPI GGNCC 2 cut(s) 67, 390
PspPPI RGGWCCY 1 cut(s) 67
SacI GAGCTC 1 cut(s) 330
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 3 cut(s) 192, 297, 427
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 2 cut(s) 67, 390
ScrFI CCNGG 3 cut(s) 49, 132, 154
SduI GDGCHC 2 cut(s) 55, 330
SinI GGWCC 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 191, 329
SmoI CTYRAG 2 cut(s) 191, 329
Sse9I AATT 2 cut(s) 148, 411
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 1 cut(s) 175
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 330
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 3 cut(s) 47, 130, 152
TaaI ACNGT 3 cut(s) 275, 361, 367
TaiI ACGT 5 cut(s) 42, 114, 183, 189, 228
TaqI TCGA 3 cut(s) 42, 57, 159
TaqII GACCGA 1 cut(s) 264
TasI AATT 2 cut(s) 148, 411
Tru1I TTAA 3 cut(s) 192, 297, 427
Tru9I TTAA 3 cut(s) 192, 297, 427
TscAI CASTG 3 cut(s) 40, 280, 370
TseFI GTSAC 2 cut(s) 35, 361
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 35, 361
TspDTI ATGAA 2 cut(s) 135, 274
TspRI CASTG 3 cut(s) 40, 280, 370
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 67
XapI RAATTY 2 cut(s) 148, 411
XspI CTAG 1 cut(s) 77
ZraI GACGTC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.