Rorug05G0482500

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004745
Physical Location & Seq
Forward (+)
66383200 .. 66383771
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0482500.1

Sequence Viewer

Length: 465 bp
ATGGATTGCCTCGAGCAATCAACATTGACAAAGATCCAGCAGGAATACCAACTTCCGTCGTTCCCTATCGGCCCTCTCAACAAAACTGTTCCGGCCATATCCATCAGCTTATTGAAAGAGGACCAGAGTTGCATTCCATGGCTTGACAAACAATCACACAAATCTCGCACTGCCAGAAGGTTTCACGAAGCTATTGGGGACAGGGGTTGCATAGTAAAATGGGCACCCCAAAAGGAAGTCTTGGCACACACTGCAGTTGGAGGGTTTTGGAGTCACTGTGGTTGGAATTCAACGATTGAGAGTATCTCTGAAGGAGTTCCGTTGATATGCCAACCTTATTTTGGGGACCAGCGAGTGAATGCAAGGTACTTGACCCAAGTTTGGGGAGTAGGGTTAGAATGGGAGAATGACATGAACAGAGGAGAAATAGAGGGAGCTATAAGAAGGCTTATGGTGGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

6.89

Isoelectric Point (pI)

50.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 65 - 152 4.1e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 223
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 330
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 3 cut(s) 341, 381, 382
AgsI TTSAA 2 cut(s) 115, 291
AluBI AGCT 3 cut(s) 108, 191, 437
AluI AGCT 3 cut(s) 108, 191, 437
AlwI GGATC 1 cut(s) 28
Ama87I CYCGRG 1 cut(s) 11
AoxI GGCC 2 cut(s) 70, 93
ApoI RAATTY 1 cut(s) 286
Asp700I GAANNNNTTC 1 cut(s) 315
AspS9I GGNCC 3 cut(s) 71, 121, 346
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 2 cut(s) 121, 346
BaeGI GKGCMC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 223
BccI CCATC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 252
Bme18I GGWCC 2 cut(s) 121, 346
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 3 cut(s) 71, 121, 346
BmiI GGNNCC 2 cut(s) 225, 347
BplI GAGNNNNNCTC 2 cut(s) 290, 322
BsaJI CCNNGG 1 cut(s) 137
BsaXI ACNNNNNCTCC 2 cut(s) 262, 292
Bsc4I CCNNNNNNNGG 3 cut(s) 341, 381, 382
BseDI CCNNGG 1 cut(s) 137
BseLI CCNNNNNNNGG 3 cut(s) 341, 381, 382
BseRI GAGGAG 1 cut(s) 435
BseSI GKGCMC 1 cut(s) 226
BshFI GGCC 2 cut(s) 72, 95
BshNI GGYRCC 1 cut(s) 223
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 212, 359
BslI CCNNNNNNNGG 3 cut(s) 341, 381, 382
BsmFI GGGAC 2 cut(s) 212, 359
BsmI GAATGC 2 cut(s) 132, 364
BsnI GGCC 2 cut(s) 72, 95
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 1 cut(s) 137
BspANI GGCC 2 cut(s) 72, 95
BspLI GGNNCC 2 cut(s) 225, 347
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 1 cut(s) 33
BssT1I CCWWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 88, 278
BstAPI GCANNNNNTGC 1 cut(s) 251
BstDSI CCRYGG 1 cut(s) 137
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 226
BstX2I RGATCY 1 cut(s) 33
BstYI RGATCY 1 cut(s) 33
BsuRI GGCC 2 cut(s) 72, 95
BtgI CCRYGG 1 cut(s) 137
BtsI GCAGTG 2 cut(s) 168, 249
BtsIMutI CAGTG 3 cut(s) 168, 249, 274
Cfr13I GGNCC 3 cut(s) 71, 121, 346
Csp6I GTAC 1 cut(s) 367
CviAII CATG 2 cut(s) 138, 412
CviJI RGCY 7 cut(s) 72, 95, 108, 142, 191, 437, 448
CviKI_1 RGCY 7 cut(s) 72, 95, 108, 142, 191, 437, 448
CviQI GTAC 1 cut(s) 367
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
EaeI YGGCCR 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 121, 346
Eco57I CTGAAG 1 cut(s) 330
Eco88I CYCGRG 1 cut(s) 11
EcoRI GAATTC 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 137
ErhI CCWWGG 1 cut(s) 137
FaeI CATG 2 cut(s) 141, 415
FaiI YATR 7 cut(s) 98, 139, 212, 328, 413, 440, 452
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FaqI GGGAC 2 cut(s) 212, 359
FatI CATG 2 cut(s) 137, 411
HaeIII GGCC 2 cut(s) 72, 95
HapII CCGG 1 cut(s) 92
Hin1II CATG 2 cut(s) 141, 415
HinfI GANTC 1 cut(s) 271
HpaII CCGG 1 cut(s) 92
Hpy188I TCNGA 1 cut(s) 310
Hpy188III TCNNGA 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 171, 305, 438
HpyCH4III ACNGT 2 cut(s) 88, 278
HpyCH4V TGCA 4 cut(s) 132, 210, 254, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 2 cut(s) 141, 415
Kzo9I GATC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 434
LpnPI CCDG 7 cut(s) 26, 50, 105, 137, 187, 187, 362
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MflI RGATCY 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 1 cut(s) 286
MlyI GAGTC 1 cut(s) 280
MmeI TCCRAC 2 cut(s) 238, 263
MnlI CCTC 6 cut(s) 20, 84, 112, 254, 413, 424
MroXI GAANNNNTTC 1 cut(s) 315
MspI CCGG 1 cut(s) 92
Mva1269I GAATGC 2 cut(s) 132, 364
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 137
NdeII GATC 1 cut(s) 33
NlaIII CATG 2 cut(s) 141, 415
NlaIV GGNNCC 2 cut(s) 225, 347
NmuCI GTSAC 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 11
PctI GAATGC 2 cut(s) 132, 364
PdmI GAANNNNTTC 1 cut(s) 315
PleI GAGTC 1 cut(s) 279
PpsI GAGTC 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 225, 347
PspPI GGNCC 3 cut(s) 71, 121, 346
PspXI VCTCGAGB 1 cut(s) 11
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 33
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 3 cut(s) 71, 121, 346
SchI GAGTC 1 cut(s) 280
SduI GDGCHC 1 cut(s) 226
SetI ASST 6 cut(s) 110, 182, 193, 337, 368, 439
SfcI CTRYAG 1 cut(s) 252
Sfr274I CTCGAG 1 cut(s) 11
SinI GGWCC 2 cut(s) 121, 346
SlaI CTCGAG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 286
StyI CCWWGG 1 cut(s) 137
TaaI ACNGT 2 cut(s) 88, 278
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 286
TscAI CASTG 3 cut(s) 175, 256, 281
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 428
TspGWI ACGGA 2 cut(s) 45, 309
TspRI CASTG 3 cut(s) 175, 256, 281
VpaK11BI GGWCC 2 cut(s) 121, 346
XapI RAATTY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.