Rh5AG532200

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004745
Physical Location & Seq
Forward (+)
91397286 .. 91399780
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG532200.1

Sequence Viewer

Length: 579 bp
ATGGTGTATGTGTATAGTTTGTTTTTTCCTTACCCTGTTTCATCAAATGGTTTGCATGTAAGCTTGAAATATATTGCAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCGATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCTGAGCTTGTCCAGCGTGTTGAGCAAGATCTACTGAACATTAGTGCTGGTGGACCAGCTGACAATGTGGATATTGAAGTAGCTGAGCAAGAGAAAAATCGAGATGGCAAGGCTGGTAATACAAGTAAAAACCCTGCACCAGCACCTGAATCAAAAACTGATATTCCTGAGGCTACTACAAACACAGGGGAGCCTGATGGAGAGCCTGATAGAAGTGATTCGGATGAATCTGACGATTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

192

Amino Acids

21.21

Weight (kDa)

4.47

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 20 - 122 1e-24 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 147, 224, 233
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 1 cut(s) 263
AgeI ACCGGT 1 cut(s) 117
AgsI TTSAA 3 cut(s) 67, 410, 573
AluBI AGCT 4 cut(s) 63, 340, 392, 416
AluI AGCT 4 cut(s) 63, 340, 392, 416
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 3 cut(s) 147, 224, 233
AlwNI CAGNNNCTG 1 cut(s) 479
AoxI GGCC 1 cut(s) 85
AsiGI ACCGGT 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 268
AvaII GGWCC 1 cut(s) 386
AxyI CCTNAGG 1 cut(s) 501
BccI CCATC 3 cut(s) 77, 431, 524
BcoDI GTCTC 1 cut(s) 278
BfmI CTRYAG 1 cut(s) 198
BglII AGATCT 1 cut(s) 361
BlpI GCTNAGC 1 cut(s) 417
Bme18I GGWCC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 386
BmiI GGNNCC 3 cut(s) 122, 321, 525
BmsI GCATC 2 cut(s) 137, 283
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 330
BsaI GGTCTC 1 cut(s) 278
BsaWI WCCGGW 1 cut(s) 117
Bse118I RCCGGY 1 cut(s) 117
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 118
Bse8I GATNNNNATC 1 cut(s) 330
BseGI GGATG 3 cut(s) 88, 298, 562
BseJI GATNNNNATC 1 cut(s) 330
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 327, 408, 492
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 87
BshTI ACCGGT 1 cut(s) 117
BsiSI CCGG 2 cut(s) 88, 118
BsmAI GTCTC 1 cut(s) 278
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 278
Bsp143I GATC 5 cut(s) 139, 229, 238, 325, 361
Bsp1720I GCTNAGC 1 cut(s) 417
BspANI GGCC 1 cut(s) 87
BspCNI CTCAG 3 cut(s) 328, 409, 493
BspLI GGNNCC 3 cut(s) 122, 321, 525
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 3 cut(s) 147, 224, 233
BspTNI GGTCTC 1 cut(s) 278
BsrDI GCAATG 1 cut(s) 118
BsrFI RCCGGY 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 117
BssMI GATC 5 cut(s) 139, 229, 238, 325, 361
Bst4CI ACNGT 2 cut(s) 151, 256
BstDEI CTNAG 3 cut(s) 336, 417, 501
BstF5I GGATG 3 cut(s) 88, 298, 562
BstKTI GATC 5 cut(s) 142, 232, 241, 328, 364
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 5 cut(s) 139, 229, 238, 325, 361
BstMWI GCNNNNNNNGC 2 cut(s) 346, 355
BstNSI RCATGY 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 198
BstX2I RGATCY 3 cut(s) 139, 229, 361
BstYI RGATCY 3 cut(s) 139, 229, 361
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 114
BtsCI GGATG 3 cut(s) 88, 298, 562
CaiI CAGNNNCTG 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 386
Csp6I GTAC 1 cut(s) 262
CspAI ACCGGT 1 cut(s) 117
CviAII CATG 2 cut(s) 56, 269
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 336, 417, 501
DpnI GATC 5 cut(s) 141, 231, 240, 327, 363
DpnII GATC 5 cut(s) 139, 229, 238, 325, 361
EaeI YGGCCR 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 278
Eco47I GGWCC 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 501
FaeI CATG 2 cut(s) 59, 272
FaiI YATR 7 cut(s) 9, 15, 57, 72, 174, 221, 270
FatI CATG 2 cut(s) 55, 268
FokI GGATG 3 cut(s) 95, 305, 569
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 88, 118
Hin1II CATG 2 cut(s) 59, 272
HindIII AAGCTT 1 cut(s) 61
HinfI GANTC 5 cut(s) 158, 482, 551, 560, 569
HpaII CCGG 2 cut(s) 88, 118
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 4 cut(s) 213, 285, 556, 565
Hpy188III TCNNGA 4 cut(s) 248, 335, 434, 500
Hpy8I GTNNAC 1 cut(s) 386
HpyCH4III ACNGT 2 cut(s) 151, 256
HpyCH4IV ACGT 1 cut(s) 170
HpyCH4V TGCA 5 cut(s) 55, 77, 128, 200, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 346, 355
HpyF3I CTNAG 3 cut(s) 336, 417, 501
HpySE526I ACGT 1 cut(s) 170
Hsp92II CATG 2 cut(s) 59, 272
Kzo9I GATC 5 cut(s) 139, 229, 238, 325, 361
LmnI GCTCC 3 cut(s) 250, 319, 523
LweI GCATC 2 cut(s) 137, 283
MaeII ACGT 1 cut(s) 170
MalI GATC 5 cut(s) 141, 231, 240, 327, 363
MboI GATC 5 cut(s) 139, 229, 238, 325, 361
MboII GAAGA 2 cut(s) 134, 318
MflI RGATCY 3 cut(s) 139, 229, 361
MluCI AATT 3 cut(s) 105, 189, 573
MnlI CCTC 4 cut(s) 73, 282, 291, 496
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 2 cut(s) 188, 192
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 2 cut(s) 88, 118
MwoI GCNNNNNNNGC 2 cut(s) 346, 355
NdeII GATC 5 cut(s) 139, 229, 238, 325, 361
NlaIII CATG 2 cut(s) 59, 272
NlaIV GGNNCC 3 cut(s) 122, 321, 525
NspI RCATGY 1 cut(s) 59
PacI TTAATTAA 1 cut(s) 192
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 5 cut(s) 158, 482, 551, 560, 569
PinAI ACCGGT 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 122, 321, 525
PspPI GGNCC 1 cut(s) 386
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 479
PsuI RGATCY 3 cut(s) 139, 229, 361
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 2 cut(s) 188, 192
Sau3AI GATC 5 cut(s) 139, 229, 238, 325, 361
Sau96I GGNCC 1 cut(s) 386
SetI ASST 6 cut(s) 65, 173, 342, 394, 418, 481
SfaNI GCATC 2 cut(s) 137, 283
SfcI CTRYAG 1 cut(s) 198
SinI GGWCC 1 cut(s) 386
Sse9I AATT 3 cut(s) 105, 189, 573
TaaI ACNGT 2 cut(s) 151, 256
TaiI ACGT 1 cut(s) 173
TaqI TCGA 2 cut(s) 298, 433
TasI AATT 3 cut(s) 105, 189, 573
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 5 cut(s) 158, 482, 551, 560, 569
Tru1I TTAA 2 cut(s) 188, 192
Tru9I TTAA 2 cut(s) 188, 192
TspDTI ATGAA 2 cut(s) 30, 573
VpaK11BI GGWCC 1 cut(s) 386
XceI RCATGY 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.