Rorug04G0253900

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004745
Physical Location & Seq
Reverse (-)
42670985 .. 42672856
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0253900.1

Sequence Viewer

Length: 1812 bp
ATGAAAAAGCCGTTGAACCAAATCCTCCACCTCACCGCCGCCTCTTCAAACTTTTCCCGCCAAAACCAACCGTCGCATTTTCACCTCATCCAACACCTCCTCCGCAACTGTAACCACTCCAGCTCCGCAAACTCCATCCATTCCGTCGTGATAAAGTCTGGCTCTTTCTACGACACTTTCACCGCCAACCATCTCATCAATTGCTATGTAAGGTTCCGCAGAATCGACTCTGCAGCCAAGGTGTTCGACGAAATGCCTGACCCAAACGTCGTGTCGTGGACGTCGCTCATCTCCGGCTACGTCAGCGCGGATCGCCCGCGAGTGGGTCTGTGGCTGTTTGGGAGGATGCTGGAATGTTCGGTTCTGCCCAACGAGTTTACTTTCGCTACTGTCATTAATGCGTGTTCGGTGCTTGCTGATGTTGAAACCGGCAGAAAAATTCATGCCCGTGTTGAAATATTGGGTGTGCAAAAGAACCTTGTTGTGTGTTCCGCGCTGGTTGATATGTACGGGAAGTGCAATGATGTCGGTGGCGCTCGGCGGGTTTTCGAGTTGATGGGTGGGAGGAATGTTGTTACTTGGACTTCCATTATTGCTGCCTATGCCCAGAACGGACGAGGCGAGGATGCGCTCCAGCTTTATAGGGAATTTAATCGTGGGATGATGGAGCGTCCGAATCATTTCATGTTGGCTAGTGTTGTAAATGCTTGTGCGAGCTTGGGTCGTTTAGTTTCTGGCAAAGTTGCACATGGAGCAGTGATTCGCCGTGGACATGATCTGAATGATGTGATTGCGAGTGCATTGGTTGACATGTATGCTAAATGTGGGAGTGTCGAGTATTCTGACAAGGTTTTCAGGCGAATTCCAAATCCCTCTGTAATAGCCTACACTTCGATGATTGTGGCTGCTGCGAAGTATGGATTGGGGAAAATGTCCCTTCAACTCTTTGAAGAAATGATCGATAGAAGAATAAAACCCAATGATGTCACCTTTGTTGGTGTCTTGCATGCTTGTAGCCATGCAGGGCTTGTGGATGAAGGGCTCCAACACTATGAATCTATGTATGAGAAACATGGAATATCCCCAAATGCAAAGCATCATACTTGCATTGTTGACATGCTTGGTCGAACTGGCCGTCTCAATGAGGCGTACGAACTGGCCAAATCCATCCAAGCAGAACCAAATCAACAAGCCTTGGTGTGGGGGACACTTCTTTCAGCGAGTAGGCTTCGTGGAAGGGTTGACATTGCTGTTGAAGCTAGCAGACGGCTAATAGATTCCAACCAACAGGTATCAGGTGCATATGTCACGTTGTCAAATGCTTATGCGTTGAGTGGAGAGTGGGAGACCGCTCATGGTCTTCGGTCAGAAATGAAGCGTACTGGGGTTAGGAAAGAACCCGGCTGCAGTTGGGTTGAGATTAAGGACTCAAATTATGTGTTCTATGCTGGAGATGTAACATCATGTGCACGGCGGAGTGAGGTGGTTACTTTGCTGAGGGAGTTGGAGGGGAAAATGAAACAAAGAGGATATGTAGGAGGGAGTATAGGATTGGTCTTTGTTGATGTAGAGGAGGAGGCCAAAGAGGAAATTGTAGGTCTTCATAGTGAGAGATTGGCGTTGGGTTTTGCATTGCTGAGTATACCAAAAGGAGTCACCATTAGAATAATGAAGAACTTGAGAATGTGTACTGATTGTCATGAAGCTTTCAAGCTTATTAGTGATATTGTTAGGAGGGAATTCATTGTTAGAGATGTTAATAGATTTCATCACTTTAAAGGTGGCTCCTGCACTTGTAGGGATTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

603

Amino Acids

67.19

Weight (kDa)

8.88

Isoelectric Point (pI)

36.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 88 - 135 3.5e-09 PPR repeat family
PPR_2 PF13041 189 - 217 9.6e-06 PPR repeat family
PPR_2 PF13041 291 - 339 5.8e-09 PPR repeat family
E_motif PF20431 414 - 473 1.8e-14 E motif
DYW_deaminase PF14432 516 - 603 1.7e-33 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 284
AccBSI CCGCTC 1 cut(s) 1352
AccI GTMKAC 1 cut(s) 1642
AccII CGCG 3 cut(s) 308, 319, 494
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 2 cut(s) 1132, 1158
AcsI RAATTY 4 cut(s) 438, 647, 861, 1739
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 4 cut(s) 509, 1151, 1381, 1690
AfiI CCNNNNNNNGG 3 cut(s) 322, 323, 1200
AflIII ACRYGT 1 cut(s) 810
AgsI TTSAA 8 cut(s) 16, 48, 425, 455, 941, 950, 1256, 1711
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 6 cut(s) 123, 637, 717, 1259, 1706, 1714
AluI AGCT 6 cut(s) 123, 637, 717, 1259, 1706, 1714
Alw21I GWGCWC 1 cut(s) 1471
Alw26I GTCTC 2 cut(s) 1142, 1340
Alw44I GTGCAC 1 cut(s) 1467
AlwI GGATC 1 cut(s) 318
AoxI GGCC 3 cut(s) 1132, 1158, 1578
ApaLI GTGCAC 1 cut(s) 1467
ApeKI GCWGC 5 cut(s) 233, 596, 905, 908, 1404
ApoI RAATTY 4 cut(s) 438, 647, 861, 1739
ArsI GACNNNNNNTTYG 4 cut(s) 257, 289, 1120, 1152
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 4 cut(s) 308, 496, 536, 631
AsuC2I CCSGG 1 cut(s) 1401
AsuHPI GGTGA 5 cut(s) 25, 74, 172, 979, 1648
AsuNHI GCTAGC 1 cut(s) 1259
BaeGI GKGCMC 1 cut(s) 1471
BalI TGGCCA 1 cut(s) 1160
BanII GRGCYC 1 cut(s) 1044
BbsI GAAGAC 2 cut(s) 1352, 1592
Bbv12I GWGCWC 1 cut(s) 1471
BbvCI CCTCAGC 1 cut(s) 1496
BbvI GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BccI CCATC 5 cut(s) 143, 198, 550, 658, 1175
BceAI ACGGC 4 cut(s) 750, 1119, 1283, 1487
BcgI CGANNNNNNTGC 2 cut(s) 508, 542
BcnI CCSGG 1 cut(s) 1401
BcoDI GTCTC 2 cut(s) 1142, 1340
BfaI CTAG 2 cut(s) 693, 1260
BfmI CTRYAG 2 cut(s) 231, 1405
BfoI RGCGCY 1 cut(s) 537
BisI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
BlsI GCNGC 6 cut(s) 40, 235, 598, 907, 910, 1406
Bme1390I CCNGG 1 cut(s) 1401
BmiI GGNNCC 3 cut(s) 215, 1043, 1786
BmrFI CCNGG 1 cut(s) 1401
BmrI ACTGGG 1 cut(s) 1392
BmsI GCATC 3 cut(s) 336, 616, 1105
BmtI GCTAGC 1 cut(s) 1263
BmuI ACTGGG 1 cut(s) 1392
BpiI GAAGAC 2 cut(s) 1352, 1592
BpmI CTGGAG 3 cut(s) 103, 617, 1470
Bpu10I CCTNAGC 1 cut(s) 1496
BpuEI CTTGAG 1 cut(s) 1699
BpuMI CCSGG 1 cut(s) 1401
Bsa29I ATCGAT 1 cut(s) 960
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 1340
BsaJI CCNNGG 3 cut(s) 237, 766, 1194
BsaXI ACNNNNNCTCC 4 cut(s) 84, 107, 114, 137
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 323, 1200
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 1135, 1161, 1387
Bse3DI GCAATG 3 cut(s) 526, 1245, 1631
BseCI ATCGAT 1 cut(s) 960
BseDI CCNNGG 3 cut(s) 237, 766, 1194
BseGI GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BseLI CCNNNNNNNGG 3 cut(s) 322, 323, 1200
BseMI GCAATG 3 cut(s) 526, 1245, 1631
BseMII CTCAG 2 cut(s) 1487, 1628
BseNI ACTGG 3 cut(s) 1135, 1161, 1387
BseRI GAGGAG 3 cut(s) 89, 1586, 1589
BseSI GKGCMC 1 cut(s) 1471
BseXI GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BsgI GTGCAG 1 cut(s) 1774
Bsh1236I CGCG 3 cut(s) 308, 319, 494
BshFI GGCC 3 cut(s) 1134, 1160, 1580
BshVI ATCGAT 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 1471
BsiSI CCGG 3 cut(s) 294, 429, 1401
BsiWI CGTACG 1 cut(s) 1149
BslFI GGGAC 2 cut(s) 919, 1219
BslI CCNNNNNNNGG 3 cut(s) 322, 323, 1200
BsmAI GTCTC 2 cut(s) 1142, 1340
BsmBI CGTCTC 1 cut(s) 1142
BsmFI GGGAC 2 cut(s) 919, 1219
BsnI GGCC 3 cut(s) 1134, 1160, 1580
Bso31I GGTCTC 1 cut(s) 1340
Bsp1286I GDGCHC 2 cut(s) 1044, 1471
Bsp143I GATC 3 cut(s) 310, 775, 957
BspANI GGCC 3 cut(s) 1134, 1160, 1580
BspCNI CTCAG 2 cut(s) 1488, 1629
BspDI ATCGAT 1 cut(s) 960
BspFNI CGCG 3 cut(s) 308, 319, 494
BspHI TCATGA 1 cut(s) 1699
BspLI GGNNCC 3 cut(s) 215, 1043, 1786
BspMAI CTGCAG 2 cut(s) 235, 1409
BspOI GCTAGC 1 cut(s) 1263
BspPI GGATC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 1340
BsrBI CCGCTC 1 cut(s) 1352
BsrDI GCAATG 3 cut(s) 526, 1245, 1631
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 3 cut(s) 1135, 1161, 1387
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 3 cut(s) 237, 766, 1194
BssMI GATC 3 cut(s) 310, 775, 957
BssNAI GTATAC 1 cut(s) 1643
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 2 cut(s) 237, 1194
Bst1107I GTATAC 1 cut(s) 1643
Bst4CI ACNGT 3 cut(s) 72, 110, 391
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 281
BstC8I GCNNGC 5 cut(s) 317, 414, 715, 1008, 1261
BstDEI CTNAG 2 cut(s) 1496, 1637
BstDSI CCRYGG 1 cut(s) 766
BstF5I GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BstFNI CGCG 3 cut(s) 308, 319, 494
BstH2I RGCGCY 1 cut(s) 537
BstHHI GCGC 4 cut(s) 308, 496, 536, 631
BstKTI GATC 3 cut(s) 313, 778, 960
BstMAI GTCTC 2 cut(s) 1142, 1340
BstMBI GATC 3 cut(s) 310, 775, 957
BstMWI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
BstNSI RCATGY 3 cut(s) 814, 1010, 1120
BstSCI CCNGG 1 cut(s) 1399
BstSFI CTRYAG 2 cut(s) 231, 1405
BstSLI GKGCMC 1 cut(s) 1471
BstUI CGCG 3 cut(s) 308, 319, 494
BstV1I GCAGC 5 cut(s) 245, 583, 892, 895, 1391
BstV2I GAAGAC 2 cut(s) 1352, 1592
BstZ17I GTATAC 1 cut(s) 1643
Bsu15I ATCGAT 1 cut(s) 960
BsuRI GGCC 3 cut(s) 1134, 1160, 1580
BsuTUI ATCGAT 1 cut(s) 960
BtgI CCRYGG 1 cut(s) 766
BtsCI GGATG 7 cut(s) 87, 135, 351, 631, 666, 1039, 1167
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 762
Cac8I GCNNGC 5 cut(s) 317, 414, 715, 1008, 1261
CciI TCATGA 1 cut(s) 1699
CfoI GCGC 4 cut(s) 308, 496, 536, 631
Cfr10I RCCGGY 1 cut(s) 428
ClaI ATCGAT 1 cut(s) 960
CseI GACGC 1 cut(s) 659
Csp6I GTAC 4 cut(s) 508, 1150, 1380, 1689
CviQI GTAC 4 cut(s) 508, 1150, 1380, 1689
DdeI CTNAG 2 cut(s) 1496, 1637
DpnI GATC 3 cut(s) 312, 777, 959
DpnII GATC 3 cut(s) 310, 775, 957
DraI TTTAAA 1 cut(s) 1777
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 2 cut(s) 1132, 1158
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 1489
Eco130I CCWWGG 2 cut(s) 237, 1194
Eco24I GRGCYC 1 cut(s) 1044
Eco31I GGTCTC 1 cut(s) 1340
EcoRI GAATTC 2 cut(s) 861, 1739
EcoT14I CCWWGG 2 cut(s) 237, 1194
EcoT38I GRGCYC 1 cut(s) 1044
ErhI CCWWGG 2 cut(s) 237, 1194
Esp3I CGTCTC 1 cut(s) 1142
FaqI GGGAC 2 cut(s) 919, 1219
FauI CCCGC 3 cut(s) 65, 324, 534
FauNDI CATATG 1 cut(s) 1303
FblI GTMKAC 1 cut(s) 1642
Fnu4HI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
FokI GGATG 7 cut(s) 74, 122, 358, 638, 673, 1046, 1154
FriOI GRGCYC 1 cut(s) 1044
Fsp4HI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
FspBI CTAG 2 cut(s) 693, 1260
GlaI GCGC 4 cut(s) 307, 495, 535, 630
GluI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
GsuI CTGGAG 3 cut(s) 103, 617, 1470
HaeII RGCGCY 1 cut(s) 537
HaeIII GGCC 3 cut(s) 1134, 1160, 1580
HapII CCGG 3 cut(s) 294, 429, 1401
HgaI GACGC 1 cut(s) 659
HhaI GCGC 4 cut(s) 308, 496, 536, 631
Hin1I GRCGYC 1 cut(s) 281
Hin6I GCGC 4 cut(s) 306, 494, 534, 629
HinP1I GCGC 4 cut(s) 306, 494, 534, 629
HincII GTYRAC 3 cut(s) 808, 1114, 1243
HindII GTYRAC 3 cut(s) 808, 1114, 1243
HindIII AAGCTT 2 cut(s) 1704, 1712
HinfI GANTC 8 cut(s) 222, 227, 676, 760, 1055, 1277, 1427, 1653
HpaII CCGG 3 cut(s) 294, 429, 1401
HphI GGTGA 5 cut(s) 25, 74, 172, 979, 1648
Hpy166II GTNNAC 9 cut(s) 279, 378, 770, 808, 1114, 1243, 1469, 1643, 1689
Hpy188I TCNGA 4 cut(s) 675, 780, 844, 1369
Hpy188III TCNNGA 2 cut(s) 148, 1700
Hpy8I GTNNAC 9 cut(s) 279, 378, 770, 808, 1114, 1243, 1469, 1643, 1689
Hpy99I CGWCG 5 cut(s) 76, 149, 251, 272, 286
HpyAV CCTTC 3 cut(s) 947, 1031, 1230
HpyCH4III ACNGT 3 cut(s) 72, 110, 391
HpyCH4IV ACGT 4 cut(s) 267, 281, 300, 1310
HpyF10VI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
HpyF3I CTNAG 2 cut(s) 1496, 1637
HpySE526I ACGT 4 cut(s) 267, 281, 300, 1310
Hsp92I GRCGYC 1 cut(s) 281
HspAI GCGC 4 cut(s) 306, 494, 534, 629
Kzo9I GATC 3 cut(s) 310, 775, 957
LmnI GCTCC 6 cut(s) 128, 636, 667, 752, 1047, 1790
Lsp1109I GCAGC 5 cut(s) 245, 583, 892, 895, 1391
LweI GCATC 3 cut(s) 336, 616, 1105
MaeI CTAG 2 cut(s) 693, 1260
MaeII ACGT 4 cut(s) 267, 281, 300, 1310
MaeIII GTNAC 7 cut(s) 110, 574, 985, 1306, 1456, 1486, 1654
MalI GATC 3 cut(s) 312, 777, 959
MbiI CCGCTC 1 cut(s) 1352
MboI GATC 3 cut(s) 310, 775, 957
MboII GAAGA 6 cut(s) 36, 962, 978, 1352, 1592, 1684
MfeI CAATTG 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 1044, 1471
MlsI TGGCCA 1 cut(s) 1160
MluCI AATT 7 cut(s) 199, 438, 647, 861, 1432, 1590, 1739
MluNI TGGCCA 1 cut(s) 1160
MlyI GAGTC 3 cut(s) 221, 1421, 1662
MmeI TCCRAC 4 cut(s) 115, 1069, 1305, 1485
Mox20I TGGCCA 1 cut(s) 1160
MroXI GAANNNNTTC 1 cut(s) 680
MscI TGGCCA 1 cut(s) 1160
MseI TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
MslI CAYNNNNRTG 2 cut(s) 447, 893
Msp20I TGGCCA 1 cut(s) 1160
MspI CCGG 3 cut(s) 294, 429, 1401
MspR9I CCNGG 1 cut(s) 1401
MunI CAATTG 1 cut(s) 199
MvnI CGCG 3 cut(s) 308, 319, 494
MwoI GCNNNNNNNGC 5 cut(s) 303, 312, 602, 752, 1256
NciI CCSGG 1 cut(s) 1401
NdeI CATATG 1 cut(s) 1303
NdeII GATC 3 cut(s) 310, 775, 957
NheI GCTAGC 1 cut(s) 1259
NlaIV GGNNCC 3 cut(s) 215, 1043, 1786
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 3 cut(s) 985, 1306, 1654
NspI RCATGY 3 cut(s) 814, 1010, 1120
PaeI GCATGC 1 cut(s) 1010
PagI TCATGA 1 cut(s) 1699
PciI ACATGT 1 cut(s) 810
PcsI WCGNNNNNNNCGW 2 cut(s) 618, 1132
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 5 cut(s) 222, 676, 760, 1055, 1277
Pfl23II CGTACG 1 cut(s) 1149
PkrI GCNGC 6 cut(s) 40, 235, 598, 907, 910, 1406
PleI GAGTC 3 cut(s) 221, 1421, 1661
PpsI GAGTC 3 cut(s) 221, 1421, 1661
PscI ACATGT 1 cut(s) 810
PshBI ATTAAT 1 cut(s) 396
PspLI CGTACG 1 cut(s) 1149
PspN4I GGNNCC 3 cut(s) 215, 1043, 1786
PstI CTGCAG 2 cut(s) 235, 1409
RsaI GTAC 4 cut(s) 509, 1151, 1381, 1690
RsaNI GTAC 4 cut(s) 508, 1150, 1380, 1689
RseI CAYNNNNRTG 2 cut(s) 447, 893
SaqAI TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
SatI GCNGC 6 cut(s) 39, 234, 597, 906, 909, 1405
Sau3AI GATC 3 cut(s) 310, 775, 957
SchI GAGTC 3 cut(s) 221, 1421, 1662
ScrFI CCNGG 1 cut(s) 1401
SduI GDGCHC 2 cut(s) 1044, 1471
SfaNI GCATC 3 cut(s) 336, 616, 1105
SfcI CTRYAG 2 cut(s) 231, 1405
SmiMI CAYNNNNRTG 2 cut(s) 447, 893
SmlI CTYRAG 1 cut(s) 1678
SmoI CTYRAG 1 cut(s) 1678
SphI GCATGC 1 cut(s) 1010
Sse9I AATT 7 cut(s) 199, 438, 647, 861, 1432, 1590, 1739
SspI AATATT 1 cut(s) 459
SspMI CTAG 2 cut(s) 693, 1260
StyD4I CCNGG 1 cut(s) 1399
StyI CCWWGG 2 cut(s) 237, 1194
TaaI ACNGT 3 cut(s) 72, 110, 391
TaiI ACGT 4 cut(s) 270, 284, 303, 1313
TaqI TCGA 7 cut(s) 225, 246, 549, 834, 893, 960, 1126
TaqII GACCGA 1 cut(s) 1353
TasI AATT 7 cut(s) 199, 438, 647, 861, 1432, 1590, 1739
TatI WGTACW 1 cut(s) 1688
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 5 cut(s) 222, 676, 760, 1055, 1277
Tru1I TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
Tru9I TTAA 5 cut(s) 396, 651, 1422, 1758, 1776
TscAI CASTG 1 cut(s) 762
TseFI GTSAC 3 cut(s) 985, 1306, 1654
TseI GCWGC 5 cut(s) 233, 596, 905, 908, 1404
Tsp45I GTSAC 3 cut(s) 985, 1306, 1654
TspGWI ACGGA 2 cut(s) 133, 627
TspRI CASTG 1 cut(s) 762
VneI GTGCAC 1 cut(s) 1467
VspI ATTAAT 1 cut(s) 396
XapI RAATTY 4 cut(s) 438, 647, 861, 1739
XceI RCATGY 3 cut(s) 814, 1010, 1120
XmiI GTMKAC 1 cut(s) 1642
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 693, 1260
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.