FvH4_3g45340

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004745
Physical Location & Seq
Forward (+)
37632778 .. 37635171
2394 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45340.t2

Sequence Viewer

Length: 615 bp
ATGGAGGAGCAGTTCGTACTGAGAGTCCCGCCGTCAGTTGCGGAGCGATTGGATCGTCTTCTGAGCGAGAATGCGAGTTCTTCAGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTGATTGGCAATGACCGTTTCCCTGCATCGCTCTTGGACCTTCCTACTGTGGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCAGCTCCAGATACTGTCGAGTACAGGCATGGTCTCACCCCTCCTATGAGGGATGCTCGGAAGAGAAGATTCCGCAGGGAGCCTGATCTAAACCCCGAGCTTGTCCAGCGTGTTGAGCAAGATCTACTGAACATTAGTGCTGGTGGACCAGCTGACAATATGGATATTGAAGTAGCTGGGCAAGAGAAAAATGGAGATGGCAATGCTGGTAATACAAGTGAAAACCCTGCGCCAGCACCTGAAGCAAAAGCTGATATTATTGAGACTGCTACAAATGCTGGGGGGGCTGATGGAGAGCCTGATAGAAGTGACTCTGATGAATCTGATGATTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

205

Amino Acids

22.22

Weight (kDa)

4.22

Isoelectric Point (pI)

53.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 1 - 133 2.2e-32 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 41, 349
AclWI GGATC 3 cut(s) 60, 260, 269
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 2 cut(s) 66, 537
AfaI GTAC 2 cut(s) 18, 299
AgsI TTSAA 2 cut(s) 446, 609
AhdI GACNNNNNGTC 1 cut(s) 91
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 5 cut(s) 281, 376, 428, 452, 527
AluI AGCT 5 cut(s) 281, 376, 428, 452, 527
Alw26I GTCTC 2 cut(s) 314, 533
AlwI GGATC 3 cut(s) 60, 260, 269
AlwNI CAGNNNCTG 2 cut(s) 290, 515
Ama87I CYCGRG 1 cut(s) 371
AoxI GGCC 1 cut(s) 121
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 2 cut(s) 175, 422
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 371
AvaII GGWCC 2 cut(s) 175, 422
BbsI GAAGAC 1 cut(s) 50
BccI CCATC 3 cut(s) 113, 467, 560
BceAI ACGGC 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 314, 533
BfmI CTRYAG 1 cut(s) 234
BglII AGATCT 1 cut(s) 397
Bme18I GGWCC 2 cut(s) 175, 422
BmeRI GACNNNNNGTC 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 371
BmgT120I GGNCC 2 cut(s) 175, 422
BmiI GGNNCC 1 cut(s) 357
BmsI GCATC 2 cut(s) 173, 319
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 314
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse3DI GCAATG 2 cut(s) 154, 484
BseGI GGATG 2 cut(s) 124, 334
BseMI GCAATG 2 cut(s) 154, 484
BseMII CTCAG 2 cut(s) 11, 53
BseRI GAGGAG 1 cut(s) 20
BseYI CCCAGC 2 cut(s) 452, 554
BshFI GGCC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 371
BsiSI CCGG 1 cut(s) 124
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 2 cut(s) 314, 533
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 314
BsoBI CYCGRG 1 cut(s) 371
Bsp119I TTCGAA 1 cut(s) 111
Bsp143I GATC 5 cut(s) 52, 265, 274, 361, 397
BspACI CCGC 3 cut(s) 29, 41, 349
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 2 cut(s) 12, 54
BspLI GGNNCC 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 238
BspPI GGATC 3 cut(s) 60, 260, 269
BspT104I TTCGAA 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 154, 484
BssMI GATC 5 cut(s) 52, 265, 274, 361, 397
Bst4CI ACNGT 3 cut(s) 155, 187, 292
Bst6I CTCTTC 2 cut(s) 108, 332
BstBI TTCGAA 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 510
BstDEI CTNAG 2 cut(s) 20, 62
BstF5I GGATG 2 cut(s) 124, 334
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 5 cut(s) 55, 268, 277, 364, 400
BstMAI GTCTC 2 cut(s) 314, 533
BstMBI GATC 5 cut(s) 52, 265, 274, 361, 397
BstMWI GCNNNNNNNGC 5 cut(s) 382, 391, 518, 551, 560
BstSFI CTRYAG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 2 cut(s) 265, 397
BstYI RGATCY 2 cut(s) 265, 397
BsuRI GGCC 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 124, 334
Cac8I GCNNGC 1 cut(s) 510
CaiI CAGNNNCTG 2 cut(s) 290, 515
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 2 cut(s) 175, 422
Csp6I GTAC 2 cut(s) 17, 298
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 123, 281, 358, 376, 428, 452, 527, 563, 574
CviKI_1 RGCY 9 cut(s) 123, 281, 358, 376, 428, 452, 527, 563, 574
CviQI GTAC 2 cut(s) 17, 298
DdeI CTNAG 2 cut(s) 20, 62
DpnI GATC 5 cut(s) 54, 267, 276, 363, 399
DpnII GATC 5 cut(s) 52, 265, 274, 361, 397
DriI GACNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 108, 332
Eam1105I GACNNNNNGTC 1 cut(s) 91
EarI CTCTTC 2 cut(s) 108, 332
Eco31I GGTCTC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 175, 422
Eco57I CTGAAG 2 cut(s) 66, 537
Eco88I CYCGRG 1 cut(s) 371
FaeI CATG 1 cut(s) 308
FaiI YATR 5 cut(s) 210, 257, 306, 323, 437
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 304
FauI CCCGC 1 cut(s) 36
FokI GGATG 2 cut(s) 131, 341
GlaI GCGC 1 cut(s) 507
GsaI CCCAGC 2 cut(s) 456, 558
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 124
HhaI GCGC 1 cut(s) 508
Hin1II CATG 1 cut(s) 308
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 6 cut(s) 24, 194, 345, 587, 596, 605
HpaII CCGG 1 cut(s) 124
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 422
Hpy188I TCNGA 6 cut(s) 63, 85, 249, 336, 592, 601
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 422
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 3 cut(s) 155, 187, 292
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 164, 236
HpyF10VI GCNNNNNNNGC 5 cut(s) 382, 391, 518, 551, 560
HpyF3I CTNAG 2 cut(s) 20, 62
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 1 cut(s) 308
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 5 cut(s) 52, 265, 274, 361, 397
LmnI GCTCC 4 cut(s) 7, 43, 286, 355
LweI GCATC 2 cut(s) 173, 319
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 584
MalI GATC 5 cut(s) 54, 267, 276, 363, 399
MboI GATC 5 cut(s) 52, 265, 274, 361, 397
MboII GAAGA 5 cut(s) 50, 72, 125, 349, 354
MflI RGATCY 2 cut(s) 265, 397
MluCI AATT 2 cut(s) 225, 609
MlyI GAGTC 2 cut(s) 33, 581
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 3 cut(s) 109, 318, 327
MseI TTAA 2 cut(s) 224, 228
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 1 cut(s) 124
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 5 cut(s) 382, 391, 518, 551, 560
NdeII GATC 5 cut(s) 52, 265, 274, 361, 397
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 1 cut(s) 584
NspV TTCGAA 1 cut(s) 111
PacI TTAATTAA 1 cut(s) 228
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 4 cut(s) 194, 345, 596, 605
PleI GAGTC 2 cut(s) 32, 581
PpsI GAGTC 2 cut(s) 32, 581
PspFI CCCAGC 2 cut(s) 452, 554
PspN4I GGNNCC 1 cut(s) 357
PspPI GGNCC 2 cut(s) 175, 422
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 2 cut(s) 290, 515
PsuI RGATCY 2 cut(s) 265, 397
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 2 cut(s) 18, 299
RsaNI GTAC 2 cut(s) 17, 298
SaqAI TTAA 2 cut(s) 224, 228
Sau3AI GATC 5 cut(s) 52, 265, 274, 361, 397
Sau96I GGNCC 2 cut(s) 175, 422
SchI GAGTC 2 cut(s) 33, 581
SetI ASST 8 cut(s) 180, 209, 283, 378, 430, 454, 517, 529
SfaNI GCATC 2 cut(s) 173, 319
SfcI CTRYAG 1 cut(s) 234
SfuI TTCGAA 1 cut(s) 111
SinI GGWCC 2 cut(s) 175, 422
Sse9I AATT 2 cut(s) 225, 609
SsiI CCGC 3 cut(s) 29, 41, 349
TaaI ACNGT 3 cut(s) 155, 187, 292
TaiI ACGT 1 cut(s) 209
TaqI TCGA 2 cut(s) 111, 294
TasI AATT 2 cut(s) 225, 609
TatI WGTACW 1 cut(s) 297
TfiI GAWTC 4 cut(s) 194, 345, 596, 605
Tru1I TTAA 2 cut(s) 224, 228
Tru9I TTAA 2 cut(s) 224, 228
TseFI GTSAC 1 cut(s) 584
Tsp45I GTSAC 1 cut(s) 584
TspDTI ATGAA 1 cut(s) 609
VpaK11BI GGWCC 2 cut(s) 175, 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.