Rh5DG568100

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004745
Physical Location & Seq
Forward (+)
87491898 .. 87494508
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG568100.1

Sequence Viewer

Length: 459 bp
ATGGAGGAGCAATTCGTACTCAGAGTCCCACCTTCAGTTGCAGAGAGATTAGATCGTCTTCTCAGCGAGAATGCTTCTTCAGACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCCGATATTGGTCAGATGATTATGGTTAGAGATCCAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCAATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCTGAGCTTGTCCAGCGTGTTGAGCAAGATCTACTAAACATTGGTGCTGGTGGACCAGCTGACAATGTGGATATCCTTTTATATAATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

152

Amino Acids

17.13

Weight (kDa)

4.5

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 1 - 132 6.7e-33 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 180, 257, 266
AcoI YGGCCR 1 cut(s) 118
AcuI CTGAAG 2 cut(s) 18, 63
AfaI GTAC 2 cut(s) 18, 296
AgeI ACCGGT 1 cut(s) 150
AhdI GACNNNNNGTC 1 cut(s) 88
AluBI AGCT 2 cut(s) 373, 425
AluI AGCT 2 cut(s) 373, 425
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 3 cut(s) 180, 257, 266
AoxI GGCC 1 cut(s) 118
AsiGI ACCGGT 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 50
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 311
BglII AGATCT 1 cut(s) 394
Bme18I GGWCC 1 cut(s) 419
BmeRI GACNNNNNGTC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 2 cut(s) 155, 354
BmsI GCATC 2 cut(s) 170, 316
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 313, 345
BpmI CTGGAG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 369
Bpu14I TTCGAA 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 311
BsaWI WCCGGW 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 150
Bse3DI GCAATG 1 cut(s) 151
Bse8I GATNNNNATC 1 cut(s) 363
BseGI GGATG 2 cut(s) 121, 331
BseJI GATNNNNATC 1 cut(s) 363
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 3 cut(s) 34, 76, 360
BseRI GAGGAG 1 cut(s) 20
BshFI GGCC 1 cut(s) 120
BshTI ACCGGT 1 cut(s) 150
BsiSI CCGG 2 cut(s) 121, 151
BslFI GGGAC 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 11
BsmI GAATGC 1 cut(s) 76
BsnI GGCC 1 cut(s) 120
Bso31I GGTCTC 1 cut(s) 311
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 6 cut(s) 52, 172, 262, 271, 358, 394
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 3 cut(s) 33, 75, 361
BspLI GGNNCC 2 cut(s) 155, 354
BspPI GGATC 3 cut(s) 180, 257, 266
BspT104I TTCGAA 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 151
BsrFI RCCGGY 1 cut(s) 150
BssAI RCCGGY 1 cut(s) 150
BssMI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
Bst4CI ACNGT 2 cut(s) 184, 289
Bst6I CTCTTC 1 cut(s) 105
BstBI TTCGAA 1 cut(s) 108
BstDEI CTNAG 3 cut(s) 20, 62, 369
BstF5I GGATG 2 cut(s) 121, 331
BstKTI GATC 6 cut(s) 55, 175, 265, 274, 361, 397
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
BstMWI GCNNNNNNNGC 2 cut(s) 379, 388
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 3 cut(s) 172, 262, 394
BstYI RGATCY 3 cut(s) 172, 262, 394
BsuRI GGCC 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 121, 331
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 1 cut(s) 419
Csp6I GTAC 2 cut(s) 17, 295
CspAI ACCGGT 1 cut(s) 150
CviAII CATG 1 cut(s) 302
CviJI RGCY 4 cut(s) 120, 355, 373, 425
CviKI_1 RGCY 4 cut(s) 120, 355, 373, 425
CviQI GTAC 2 cut(s) 17, 295
DdeI CTNAG 3 cut(s) 20, 62, 369
DpnI GATC 6 cut(s) 54, 174, 264, 273, 360, 396
DpnII GATC 6 cut(s) 52, 172, 262, 271, 358, 394
DriI GACNNNNNGTC 1 cut(s) 88
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 105
Eam1105I GACNNNNNGTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 419
Eco57I CTGAAG 2 cut(s) 18, 63
EcoRV GATATC 1 cut(s) 439
FaeI CATG 1 cut(s) 305
FaiI YATR 5 cut(s) 207, 254, 303, 448, 450
FaqI GGGAC 1 cut(s) 11
FatI CATG 1 cut(s) 301
FokI GGATG 2 cut(s) 128, 338
GsuI CTGGAG 1 cut(s) 264
HaeIII GGCC 1 cut(s) 120
HapII CCGG 2 cut(s) 121, 151
Hin1II CATG 1 cut(s) 305
HinfI GANTC 2 cut(s) 24, 191
HpaII CCGG 2 cut(s) 121, 151
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 3 cut(s) 23, 82, 246
Hpy188III TCNNGA 2 cut(s) 281, 368
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 1 cut(s) 42
HpyCH4III ACNGT 2 cut(s) 184, 289
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 2 cut(s) 41, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 388
HpyF3I CTNAG 3 cut(s) 20, 62, 369
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 6 cut(s) 52, 172, 262, 271, 358, 394
LmnI GCTCC 3 cut(s) 7, 283, 352
LweI GCATC 2 cut(s) 170, 316
MaeII ACGT 1 cut(s) 203
MalI GATC 6 cut(s) 54, 174, 264, 273, 360, 396
MboI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
MboII GAAGA 5 cut(s) 50, 69, 122, 167, 351
MflI RGATCY 3 cut(s) 172, 262, 394
MluCI AATT 3 cut(s) 11, 138, 222
MlyI GAGTC 1 cut(s) 33
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 3 cut(s) 106, 315, 324
MseI TTAA 2 cut(s) 221, 225
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 2 cut(s) 121, 151
Mva1269I GAATGC 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 379, 388
NdeII GATC 6 cut(s) 52, 172, 262, 271, 358, 394
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 2 cut(s) 155, 354
NspV TTCGAA 1 cut(s) 108
PacI TTAATTAA 1 cut(s) 225
PctI GAATGC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 191
PinAI ACCGGT 1 cut(s) 150
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 155, 354
PspPI GGNCC 1 cut(s) 419
PsuI RGATCY 3 cut(s) 172, 262, 394
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 18, 296
RsaNI GTAC 2 cut(s) 17, 295
SaqAI TTAA 2 cut(s) 221, 225
Sau3AI GATC 6 cut(s) 52, 172, 262, 271, 358, 394
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 33
SetI ASST 4 cut(s) 34, 206, 375, 427
SfaNI GCATC 2 cut(s) 170, 316
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 1 cut(s) 419
Sse9I AATT 3 cut(s) 11, 138, 222
TaaI ACNGT 2 cut(s) 184, 289
TaiI ACGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 108, 331
TasI AATT 3 cut(s) 11, 138, 222
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 191
Tru1I TTAA 2 cut(s) 221, 225
Tru9I TTAA 2 cut(s) 221, 225
VpaK11BI GGWCC 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.