Rmu_ssc0000026.1_g000006

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000026.1
OG0004745
Physical Location & Seq
Forward (+)
7525 .. 10169
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000026.1_g000006.1.cds

Sequence Viewer

Length: 765 bp
atgcaggagcgccgtacaacaacgaccaagagaaagacctcgcttagaggactgggtgcccggagagcttgcgccaccgagatagaacagcgaccgccggagaccggtacaagacaatgcaacgggcggatgcccgatataggttttctggggagacccagactaggaaccttctctccttctctgcttcacttccagccacctctgaatctctctatctctctctctttgcgtttgaatttcccacgggtaatctcatcggccaccaaagacttcaatttctcaatcaattttacattcggagtgatggaggagcaattcgtactcagagtcccaccttcagttgcagagagattagatcgtcttctcagcgagaatgcttcttcagacgacaagtcgttggatttgtctttcgaagaggatggccggagtggaacatttgtaattggcaatgaccggttccctgcatcgctcttggatcttcctactgttgtggaatcctacaaaacgtatgacgatagtgtgttaattaagactgcagatattggtcagatgattatggttagagatccaaatgatcctgctccagatacagttgagtacaggcatggtctcacccctccgatgagggatgctcgaaagcgaagatttcgcagggagcctgatctaaatcctgagcttgtccagcgtgttgagcaagatctactgaacattagtgctggtggaccagctgacaatgtggatatccttttatataatgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

254

Amino Acids

28.61

Weight (kDa)

6.21

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 56
AciI CCGC 2 cut(s) 95, 127
AclWI GGATC 3 cut(s) 486, 563, 572
AcoI YGGCCR 2 cut(s) 261, 424
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 2 cut(s) 324, 369
AfaI GTAC 4 cut(s) 16, 109, 324, 602
AfiI CCNNNNNNNGG 3 cut(s) 104, 140, 164
AgeI ACCGGT 2 cut(s) 104, 456
AgsI TTSAA 2 cut(s) 238, 277
AhdI GACNNNNNGTC 1 cut(s) 394
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 68, 679, 731
AluI AGCT 3 cut(s) 68, 679, 731
Alw26I GTCTC 3 cut(s) 95, 148, 617
AlwI GGATC 3 cut(s) 486, 563, 572
AoxI GGCC 2 cut(s) 261, 424
ApoI RAATTY 1 cut(s) 238
AsiGI ACCGGT 2 cut(s) 104, 456
AspLEI GCGC 2 cut(s) 12, 74
AspS9I GGNCC 1 cut(s) 725
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 1 cut(s) 607
AsuII TTCGAA 1 cut(s) 414
AvaII GGWCC 1 cut(s) 725
BaeGI GKGCMC 1 cut(s) 61
BanI GGYRCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 356
BccI CCATC 2 cut(s) 301, 416
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 3 cut(s) 95, 148, 617
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 13
BglII AGATCT 1 cut(s) 700
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 725
BmeRI GACNNNNNGTC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 725
BmiI GGNNCC 4 cut(s) 58, 169, 461, 660
BmrFI CCNGG 1 cut(s) 61
BmrI ACTGGG 1 cut(s) 62
BmsI GCATC 3 cut(s) 120, 476, 622
BmuI ACTGGG 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 356
BplI GAGNNNNNCTC 2 cut(s) 619, 651
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 61
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 3 cut(s) 95, 148, 617
BsaJI CCNNGG 1 cut(s) 245
BsaWI WCCGGW 2 cut(s) 104, 456
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 140, 164
Bse118I RCCGGY 2 cut(s) 104, 456
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 457
Bse8I GATNNNNATC 1 cut(s) 669
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 135, 427, 637
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 104, 140, 164
BseMI GCAATG 1 cut(s) 457
BseMII CTCAG 3 cut(s) 340, 382, 666
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 326
BseSI GKGCMC 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 2 cut(s) 263, 426
BshNI GGYRCC 1 cut(s) 56
BshTI ACCGGT 2 cut(s) 104, 456
BsiEI CGRYCG 1 cut(s) 95
BsiSI CCGG 5 cut(s) 61, 98, 105, 427, 457
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 3 cut(s) 104, 140, 164
BsmAI GTCTC 3 cut(s) 95, 148, 617
BsmFI GGGAC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 2 cut(s) 263, 426
Bso31I GGTCTC 3 cut(s) 95, 148, 617
Bsp119I TTCGAA 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 61
Bsp143I GATC 6 cut(s) 358, 478, 568, 577, 664, 700
BspACI CCGC 2 cut(s) 95, 127
BspANI GGCC 2 cut(s) 263, 426
BspCNI CTCAG 3 cut(s) 339, 381, 667
BspLI GGNNCC 4 cut(s) 58, 169, 461, 660
BspMAI CTGCAG 1 cut(s) 541
BspPI GGATC 3 cut(s) 486, 563, 572
BspT104I TTCGAA 1 cut(s) 414
BspT107I GGYRCC 1 cut(s) 56
BspTNI GGTCTC 3 cut(s) 95, 148, 617
BsrDI GCAATG 1 cut(s) 457
BsrFI RCCGGY 2 cut(s) 104, 456
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 2 cut(s) 104, 456
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
Bst4CI ACNGT 2 cut(s) 490, 595
Bst6I CTCTTC 1 cut(s) 411
BstBI TTCGAA 1 cut(s) 414
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 4 cut(s) 44, 326, 368, 675
BstDSI CCRYGG 1 cut(s) 245
BstF5I GGATG 3 cut(s) 135, 427, 637
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 74
BstKTI GATC 6 cut(s) 361, 481, 571, 580, 667, 703
BstMAI GTCTC 3 cut(s) 95, 148, 617
BstMBI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 3 cut(s) 65, 685, 694
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 537
BstSLI GKGCMC 1 cut(s) 61
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 3 cut(s) 478, 568, 700
BstYI RGATCY 3 cut(s) 478, 568, 700
BsuRI GGCC 2 cut(s) 263, 426
BtgI CCRYGG 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 453
BtsCI GGATG 3 cut(s) 135, 427, 637
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 2 cut(s) 12, 74
Cfr10I RCCGGY 2 cut(s) 104, 456
Cfr13I GGNCC 1 cut(s) 725
Csp6I GTAC 4 cut(s) 15, 108, 323, 601
CspAI ACCGGT 2 cut(s) 104, 456
CviAII CATG 1 cut(s) 608
CviJI RGCY 7 cut(s) 68, 199, 263, 426, 661, 679, 731
CviKI_1 RGCY 7 cut(s) 68, 199, 263, 426, 661, 679, 731
CviQI GTAC 4 cut(s) 15, 108, 323, 601
DdeI CTNAG 4 cut(s) 44, 326, 368, 675
DpnI GATC 6 cut(s) 360, 480, 570, 579, 666, 702
DpnII GATC 6 cut(s) 358, 478, 568, 577, 664, 700
DriI GACNNNNNGTC 1 cut(s) 394
EaeI YGGCCR 2 cut(s) 261, 424
Eam1104I CTCTTC 1 cut(s) 411
Eam1105I GACNNNNNGTC 1 cut(s) 394
EarI CTCTTC 1 cut(s) 411
EciI GGCGGA 1 cut(s) 142
Eco31I GGTCTC 3 cut(s) 95, 148, 617
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 725
Eco57I CTGAAG 2 cut(s) 324, 369
EcoRV GATATC 1 cut(s) 745
FaeI CATG 1 cut(s) 611
FaiI YATR 6 cut(s) 140, 513, 560, 609, 754, 756
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 607
FokI GGATG 3 cut(s) 142, 434, 644
FspBI CTAG 1 cut(s) 164
GlaI GCGC 2 cut(s) 11, 73
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 263, 426
HapII CCGG 5 cut(s) 61, 98, 105, 427, 457
HhaI GCGC 2 cut(s) 12, 74
Hin1II CATG 1 cut(s) 611
Hin6I GCGC 2 cut(s) 10, 72
HinP1I GCGC 2 cut(s) 10, 72
HinfI GANTC 3 cut(s) 208, 330, 497
HpaII CCGG 5 cut(s) 61, 98, 105, 427, 457
HphI GGTGA 1 cut(s) 607
Hpy166II GTNNAC 1 cut(s) 725
Hpy188I TCNGA 6 cut(s) 207, 302, 329, 388, 552, 624
Hpy188III TCNNGA 2 cut(s) 587, 674
Hpy8I GTNNAC 1 cut(s) 725
HpyAV CCTTC 3 cut(s) 181, 189, 348
HpyCH4III ACNGT 2 cut(s) 490, 595
HpyCH4IV ACGT 1 cut(s) 509
HpyCH4V TGCA 5 cut(s) 4, 120, 347, 467, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 685, 694
HpyF3I CTNAG 4 cut(s) 44, 326, 368, 675
HpySE526I ACGT 1 cut(s) 509
Hsp92II CATG 1 cut(s) 611
HspAI GCGC 2 cut(s) 10, 72
Kzo9I GATC 6 cut(s) 358, 478, 568, 577, 664, 700
LmnI GCTCC 4 cut(s) 7, 313, 589, 658
LweI GCATC 3 cut(s) 120, 476, 622
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 509
MalI GATC 6 cut(s) 360, 480, 570, 579, 666, 702
MboI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
MboII GAAGA 5 cut(s) 356, 375, 428, 473, 657
MflI RGATCY 3 cut(s) 478, 568, 700
MhlI GDGCHC 1 cut(s) 61
MluCI AATT 6 cut(s) 238, 277, 289, 317, 444, 528
MlyI GAGTC 1 cut(s) 339
MmeI TCCRAC 1 cut(s) 381
MnlI CCTC 7 cut(s) 41, 49, 213, 304, 412, 621, 630
MseI TTAA 2 cut(s) 527, 531
MspA1I CMGCKG 1 cut(s) 731
MspI CCGG 5 cut(s) 61, 98, 105, 427, 457
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 382
MwoI GCNNNNNNNGC 3 cut(s) 65, 685, 694
NciI CCSGG 1 cut(s) 61
NdeII GATC 6 cut(s) 358, 478, 568, 577, 664, 700
NlaIII CATG 1 cut(s) 611
NlaIV GGNNCC 4 cut(s) 58, 169, 461, 660
NspV TTCGAA 1 cut(s) 414
PacI TTAATTAA 1 cut(s) 531
PctI GAATGC 1 cut(s) 382
PfeI GAWTC 2 cut(s) 208, 497
PinAI ACCGGT 2 cut(s) 104, 456
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PspN4I GGNNCC 4 cut(s) 58, 169, 461, 660
PspPI GGNCC 1 cut(s) 725
PstI CTGCAG 1 cut(s) 541
PsuI RGATCY 3 cut(s) 478, 568, 700
PvuII CAGCTG 1 cut(s) 731
RsaI GTAC 4 cut(s) 16, 109, 324, 602
RsaNI GTAC 4 cut(s) 15, 108, 323, 601
SaqAI TTAA 2 cut(s) 527, 531
Sau3AI GATC 6 cut(s) 358, 478, 568, 577, 664, 700
Sau96I GGNCC 1 cut(s) 725
SchI GAGTC 1 cut(s) 339
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 61
SetI ASST 9 cut(s) 41, 70, 145, 173, 205, 340, 512, 681, 733
SfaNI GCATC 3 cut(s) 120, 476, 622
SfcI CTRYAG 1 cut(s) 537
SfuI TTCGAA 1 cut(s) 414
SinI GGWCC 1 cut(s) 725
Sse9I AATT 6 cut(s) 238, 277, 289, 317, 444, 528
SsiI CCGC 2 cut(s) 95, 127
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 2 cut(s) 490, 595
TaiI ACGT 1 cut(s) 512
TaqI TCGA 2 cut(s) 414, 637
TasI AATT 6 cut(s) 238, 277, 289, 317, 444, 528
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 2 cut(s) 208, 497
Tru1I TTAA 2 cut(s) 527, 531
Tru9I TTAA 2 cut(s) 527, 531
VpaK11BI GGWCC 1 cut(s) 725
XapI RAATTY 1 cut(s) 238
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.