RLG00000009301

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004745
Physical Location & Seq
Reverse (-)
50475193 .. 50481107
5915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009301

Sequence Viewer

Length: 888 bp
ATGGGGCTTTTCTCTATCGCGAGGCAGACGTCTCATTCCGCGTCTCCTCCCTCCTCCTCCTTCTTCTTCTTCGGTGTTTGGACTCTCAGATCGCCTTCTTCCTCAACTCGTCGCGACCTCCTTCAATTCGTGGATTGTCGCCGCCATCCTCAACGCCTTCTTCTTCAGCTTGTCGTGGATTGTCGCAGCCTTCCTCTGCGCCATCTTCTTCAGGTCGTCGTGGATCCTCGCCGGGCCTTCCCCTGCGCCTTCTTCTTCAGCTCGTCGCTGGTGATCTCCTTCAATTCATGGATTCTCGTCACTGAAAGTGATGGAGGAGCAATTCACGACAAGTCGTTGGATTTGTCTTTCGAAGAGGATGGCCGGAGTGGAACATTTGTAATTGGCAATGACCGGTTCCCTGCATCGCTCTTGGATCTTCCTACTGTTGTGGAATCCTACAAAACGTATGACGATAGTGTGTTAATTAAGACTGCAGATATTGGTCAGATGATTATGGTTAGAGATCAAAATGATCCTGCTCCAGATACAGTTGAGTACAGGCATGGTCTCACCCCTCCGATGAGGGATGCTCGAAAGCGAAGATTTCGCAGGGAGCCTGATCTAAATCCTGAGCTTGTCCAGCGTGTTGAGCAAGATCTGCTGAACATTAGTGCTAGTGGACCAGCTGACAATGTTATGAAGCGTACTGTTACATCAATTGATATCTCACATATTGAAGTAGCTGAGCAAGAGAAAAATCGAGATGGCAAGGCTGGTAATACAAGTAAAAACCCTGCACCAGCACCTGAATCAAAAACTGATATTCCTGAGGCTGCTACAAACACAGGGGAGCCTGATGGAGAGCCTGATAGAAGTGATTCAGATGAATCTGACGATTCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

296

Amino Acids

32.88

Weight (kDa)

5.07

Isoelectric Point (pI)

61.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAFII55_N PF04658 110 - 214 7.6e-26 TAFII55 protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 32
AccII CGCG 3 cut(s) 20, 41, 114
AciI CCGC 2 cut(s) 39, 142
AclWI GGATC 4 cut(s) 218, 231, 423, 509
AcoI YGGCCR 1 cut(s) 361
AcuI CTGAAG 3 cut(s) 149, 194, 241
AcyI GRCGYC 1 cut(s) 29
AfaI GTAC 2 cut(s) 539, 688
AgeI ACCGGT 1 cut(s) 393
AgsI TTSAA 4 cut(s) 125, 283, 719, 882
AluBI AGCT 5 cut(s) 169, 261, 616, 668, 725
AluI AGCT 5 cut(s) 169, 261, 616, 668, 725
Alw26I GTCTC 3 cut(s) 36, 48, 554
AlwI GGATC 4 cut(s) 218, 231, 423, 509
AlwNI CAGNNNCTG 1 cut(s) 788
AoxI GGCC 2 cut(s) 234, 361
ApeKI GCWGC 2 cut(s) 186, 815
AsiGI ACCGGT 1 cut(s) 393
Asp700I GAANNNNTTC 1 cut(s) 859
AspLEI GCGC 2 cut(s) 201, 248
AspS9I GGNCC 2 cut(s) 234, 662
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 283, 544
AsuII TTCGAA 1 cut(s) 351
AvaII GGWCC 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 810
BamHI GGATCC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 198, 802
BccI CCATC 6 cut(s) 153, 210, 305, 353, 740, 833
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 36, 48, 554
BfaI CTAG 1 cut(s) 657
BfmI CTRYAG 1 cut(s) 474
BglII AGATCT 1 cut(s) 637
BisI GCNGC 3 cut(s) 142, 187, 816
BlpI GCTNAGC 1 cut(s) 726
BlsI GCNGC 3 cut(s) 143, 188, 817
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 662
BmgT120I GGNCC 2 cut(s) 234, 662
BmiI GGNNCC 4 cut(s) 225, 398, 597, 834
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 2 cut(s) 413, 559
BplI GAGNNNNNCTC 2 cut(s) 556, 588
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 554
BsaWI WCCGGW 1 cut(s) 393
Bse118I RCCGGY 1 cut(s) 393
Bse21I CCTNAGG 1 cut(s) 810
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 606
BseGI GGATG 3 cut(s) 145, 364, 574
BseJI GATNNNNATC 1 cut(s) 606
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 4 cut(s) 100, 603, 717, 801
BseRI GAGGAG 4 cut(s) 36, 43, 46, 330
BseXI GCAGC 2 cut(s) 198, 802
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 3 cut(s) 20, 41, 114
BshFI GGCC 2 cut(s) 236, 363
BshTI ACCGGT 1 cut(s) 393
BsiSI CCGG 3 cut(s) 232, 364, 394
BsmAI GTCTC 3 cut(s) 36, 48, 554
BsmBI CGTCTC 2 cut(s) 36, 48
BsnI GGCC 2 cut(s) 236, 363
Bso31I GGTCTC 1 cut(s) 554
Bsp119I TTCGAA 1 cut(s) 351
Bsp143I GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
Bsp1720I GCTNAGC 1 cut(s) 726
Bsp68I TCGCGA 2 cut(s) 20, 114
BspACI CCGC 2 cut(s) 39, 142
BspANI GGCC 2 cut(s) 236, 363
BspCNI CTCAG 4 cut(s) 99, 604, 718, 802
BspFNI CGCG 3 cut(s) 20, 41, 114
BspLI GGNNCC 4 cut(s) 225, 398, 597, 834
BspMAI CTGCAG 1 cut(s) 478
BspPI GGATC 4 cut(s) 218, 231, 423, 509
BspT104I TTCGAA 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 554
BsrDI GCAATG 1 cut(s) 394
BsrFI RCCGGY 1 cut(s) 393
BssAI RCCGGY 1 cut(s) 393
BssMI GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 427, 532, 691
Bst6I CTCTTC 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 640
BstBI TTCGAA 1 cut(s) 351
BstDEI CTNAG 4 cut(s) 86, 612, 726, 810
BstF5I GGATG 3 cut(s) 145, 364, 574
BstFNI CGCG 3 cut(s) 20, 41, 114
BstHHI GCGC 2 cut(s) 201, 248
BstKTI GATC 8 cut(s) 92, 226, 276, 418, 508, 517, 604, 640
BstMAI GTCTC 3 cut(s) 36, 48, 554
BstMBI GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
BstMWI GCNNNNNNNGC 3 cut(s) 622, 631, 640
BstSCI CCNGG 1 cut(s) 231
BstSFI CTRYAG 1 cut(s) 474
BstUI CGCG 3 cut(s) 20, 41, 114
BstV1I GCAGC 2 cut(s) 198, 802
BstX2I RGATCY 3 cut(s) 223, 415, 637
BstYI RGATCY 3 cut(s) 223, 415, 637
Bsu36I CCTNAGG 1 cut(s) 810
BsuRI GGCC 2 cut(s) 236, 363
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 145, 364, 574
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 2 cut(s) 20, 114
CaiI CAGNNNCTG 1 cut(s) 788
CfoI GCGC 2 cut(s) 201, 248
Cfr10I RCCGGY 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 234, 662
CseI GACGC 1 cut(s) 30
Csp6I GTAC 2 cut(s) 538, 687
CspAI ACCGGT 1 cut(s) 393
CviAII CATG 2 cut(s) 288, 545
CviQI GTAC 2 cut(s) 538, 687
DdeI CTNAG 4 cut(s) 86, 612, 726, 810
DpnI GATC 8 cut(s) 91, 225, 275, 417, 507, 516, 603, 639
DpnII GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
EaeI YGGCCR 1 cut(s) 361
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 554
Eco32I GATATC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 662
Eco57I CTGAAG 3 cut(s) 149, 194, 241
Eco81I CCTNAGG 1 cut(s) 810
EcoRV GATATC 1 cut(s) 706
Esp3I CGTCTC 2 cut(s) 36, 48
FaeI CATG 2 cut(s) 291, 548
FaiI YATR 6 cut(s) 289, 450, 497, 546, 680, 714
FatI CATG 2 cut(s) 287, 544
Fnu4HI GCNGC 3 cut(s) 142, 187, 816
FokI GGATG 3 cut(s) 132, 371, 581
Fsp4HI GCNGC 3 cut(s) 142, 187, 816
FspBI CTAG 1 cut(s) 657
GlaI GCGC 2 cut(s) 200, 247
GluI GCNGC 3 cut(s) 142, 187, 816
GsuI CTGGAG 1 cut(s) 507
HaeIII GGCC 2 cut(s) 236, 363
HapII CCGG 3 cut(s) 232, 364, 394
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 201, 248
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 2 cut(s) 291, 548
Hin6I GCGC 2 cut(s) 199, 246
HinP1I GCGC 2 cut(s) 199, 246
HinfI GANTC 7 cut(s) 82, 292, 434, 791, 860, 869, 878
HpaII CCGG 3 cut(s) 232, 364, 394
HphI GGTGA 2 cut(s) 283, 544
Hpy166II GTNNAC 1 cut(s) 662
Hpy188I TCNGA 5 cut(s) 89, 489, 561, 865, 874
Hpy188III TCNNGA 7 cut(s) 19, 113, 326, 524, 611, 743, 809
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 3 cut(s) 114, 221, 268
HpyAV CCTTC 8 cut(s) 70, 105, 131, 167, 200, 247, 259, 289
HpyCH4III ACNGT 3 cut(s) 427, 532, 691
HpyCH4IV ACGT 2 cut(s) 29, 446
HpyCH4V TGCA 3 cut(s) 404, 476, 779
HpyF10VI GCNNNNNNNGC 3 cut(s) 622, 631, 640
HpyF3I CTNAG 4 cut(s) 86, 612, 726, 810
HpySE526I ACGT 2 cut(s) 29, 446
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 291, 548
HspAI GCGC 2 cut(s) 199, 246
Kzo9I GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
LmnI GCTCC 4 cut(s) 317, 526, 595, 832
Lsp1109I GCAGC 2 cut(s) 198, 802
LweI GCATC 2 cut(s) 413, 559
MaeI CTAG 1 cut(s) 657
MaeII ACGT 2 cut(s) 29, 446
MaeIII GTNAC 2 cut(s) 298, 691
MalI GATC 8 cut(s) 91, 225, 275, 417, 507, 516, 603, 639
MboI GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 3 cut(s) 223, 415, 637
MluCI AATT 7 cut(s) 125, 283, 321, 381, 465, 699, 882
MlyI GAGTC 1 cut(s) 76
MmeI TCCRAC 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 859
MseI TTAA 2 cut(s) 464, 468
MspA1I CMGCKG 1 cut(s) 668
MspI CCGG 3 cut(s) 232, 364, 394
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 699
MvnI CGCG 3 cut(s) 20, 41, 114
MwoI GCNNNNNNNGC 3 cut(s) 622, 631, 640
NciI CCSGG 1 cut(s) 233
NdeII GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
NlaIII CATG 2 cut(s) 291, 548
NlaIV GGNNCC 4 cut(s) 225, 398, 597, 834
NmuCI GTSAC 1 cut(s) 298
NruI TCGCGA 2 cut(s) 20, 114
NspV TTCGAA 1 cut(s) 351
PacI TTAATTAA 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 859
PfeI GAWTC 6 cut(s) 292, 434, 791, 860, 869, 878
PinAI ACCGGT 1 cut(s) 393
PkrI GCNGC 3 cut(s) 143, 188, 817
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PspN4I GGNNCC 4 cut(s) 225, 398, 597, 834
PspPI GGNCC 2 cut(s) 234, 662
PstI CTGCAG 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 788
PsuI RGATCY 3 cut(s) 223, 415, 637
PvuII CAGCTG 1 cut(s) 668
RruI TCGCGA 2 cut(s) 20, 114
RsaI GTAC 2 cut(s) 539, 688
RsaNI GTAC 2 cut(s) 538, 687
SaqAI TTAA 2 cut(s) 464, 468
SatI GCNGC 3 cut(s) 142, 187, 816
Sau3AI GATC 8 cut(s) 89, 223, 273, 415, 505, 514, 601, 637
Sau96I GGNCC 2 cut(s) 234, 662
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 1 cut(s) 233
SfaNI GCATC 2 cut(s) 413, 559
SfcI CTRYAG 1 cut(s) 474
SfuI TTCGAA 1 cut(s) 351
SinI GGWCC 1 cut(s) 662
Sse9I AATT 7 cut(s) 125, 283, 321, 381, 465, 699, 882
SsiI CCGC 2 cut(s) 39, 142
SspMI CTAG 1 cut(s) 657
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 427, 532, 691
TaiI ACGT 2 cut(s) 32, 449
TaqI TCGA 3 cut(s) 351, 574, 742
TasI AATT 7 cut(s) 125, 283, 321, 381, 465, 699, 882
TatI WGTACW 1 cut(s) 537
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 6 cut(s) 292, 434, 791, 860, 869, 878
Tru1I TTAA 2 cut(s) 464, 468
Tru9I TTAA 2 cut(s) 464, 468
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 2 cut(s) 186, 815
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 3 cut(s) 276, 695, 882
TspRI CASTG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 662
XmnI GAANNNNTTC 1 cut(s) 859
XspI CTAG 1 cut(s) 657
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.