Rorug04G0254000

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004745
Physical Location & Seq
Forward (+)
42676671 .. 42678414
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0254000.1

Sequence Viewer

Length: 1113 bp
ATGGCCCCAATTCCCATTTCTCCTGTTAAGGTTGGTCACATTGATGATGTCCAAGAGCTGAGAAAGACTAAACCCACCATAATTCCTGAAAGATTTGTAAGGGACAAAACTGAGAGACCAACAACTGTAGCCACTGCTATACCATCCTCTAGTGACATTCCCACTATCAATTTCTCTAAGCTTTCCAGTGGAAACACAGATGAACTCAGAACTGAAATCTCTCATCTCACAACCGCTTGCAAGGACTGGGGATTTTTTCAGGTGGTAAGTCATGGGATTGATCTGAGTCTGCTTGAGAGTATAGAGAAGGTAGCCCAGGATTTCTTCATGCTACCTTTAGCAGAGAAACAGAAGTATCCAATGGCTCCTGGAACTGTTCAAGGATATGGACAAGCTTTTGTTTTATCAGAGGACCAAAAACTTGATTGGTGCAACATGTTTGCTCTTGGGGTTGAGCCTAAGTTTATAAGGAACCCAATACTATGGCCAACAAAACCAGAAAAGTTCAGTGAAACTGTAGAGGTCTATTCAAAAGAAGTGAGGAAACTATGCCAGAATCTGTTGAAGTACATTGCCATGAGCCTCGGCTTGCAAGGTGACATCTTTGAAAAGATGTTTGGGGAGGCTGTTCAAGCCATAAGGATGAACTACTACCCTCCATGTTCAAGACCTGACCTTGTTTTAGGCCTAAGCCCACATTCAGATGGGAGTGCCCTGACAGTTCTGCAGCAAGGGAAGGACAACTCAGTAGGACTTCAAATCCTCAAAGATGACAGATGGGTACCTGTTCAGCCTATTCCCAATGCTCTTGTGATCAACATTGGGGACACCATAGAAGTTCTTACAAATGGGATCTATAAGAGTGTGGAGCATAGAGCAGTGACTCACAAGGTGAAAGATAGGCTTTCAATCGTCACATTTTATGCTCCTAGCTATGAGGTAGAGCTTGGACCTGTGCAAGAACTGCTGGATGAAAACACTCCATGCAAGTATAGAAGATACAATCATGGAGAGTACAGCAAACACTATGTTACAAACAAGTTGCAAGGAAAAAAAACACTCGAGTTTGCCAAGATTCAAAGCAGAAGTTCAAACCAGGAAGAACCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000428 GO:0001067 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0005737 GO:0005794 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006469 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0012505 GO:0014070 GO:0016043 GO:0016070 GO:0016591 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019899 GO:0022607 GO:0023052 GO:0030518 GO:0030520 GO:0030522 GO:0030880 GO:0031056 GO:0031057 GO:0031248 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032774 GO:0032870 GO:0032991 GO:0033043 GO:0033044 GO:0033276 GO:0033673 GO:0033993 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0034708 GO:0035035 GO:0035065 GO:0035067 GO:0035097 GO:0035257 GO:0042221 GO:0042325 GO:0042326 GO:0042809 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043401 GO:0043549 GO:0043933 GO:0044085 GO:0044092 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044665 GO:0044798 GO:0045859 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045936 GO:0045944 GO:0046483 GO:0046966 GO:0046982 GO:0046983 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048545 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051123 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051427 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0065009 GO:0070013 GO:0070461 GO:0070887 GO:0070897 GO:0071310 GO:0071339 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901983 GO:1901984 GO:1902275 GO:1902493 GO:1902494 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2000756 GO:2000757 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
TAFII55_N

Protein Analysis

370

Amino Acids

41.76

Weight (kDa)

6.47

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 53 - 164 7.2e-29 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 211 - 310 2.7e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 467
Acc65I GGTACC 1 cut(s) 781
AccB1I GGYRCC 1 cut(s) 781
AciI CCGC 1 cut(s) 234
AclWI GGATC 1 cut(s) 860
AcoI YGGCCR 1 cut(s) 485
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 3 cut(s) 569, 783, 1016
AflIII ACRYGT 1 cut(s) 435
AjnI CCWGG 3 cut(s) 315, 367, 1095
AjuI GAANNNNNNNTTGG 3 cut(s) 33, 600, 632
AluBI AGCT 5 cut(s) 58, 181, 395, 933, 946
AluI AGCT 5 cut(s) 58, 181, 395, 933, 946
Alw26I GTCTC 1 cut(s) 109
AlwI GGATC 1 cut(s) 860
AlwNI CAGNNNCTG 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 1061
AoxI GGCC 3 cut(s) 3, 485, 685
ApeKI GCWGC 1 cut(s) 727
Asp718I GGTACC 1 cut(s) 781
AspS9I GGNCC 3 cut(s) 4, 412, 950
AsuHPI GGTGA 2 cut(s) 608, 904
AvaI CYCGRG 1 cut(s) 1061
AvaII GGWCC 2 cut(s) 412, 950
BaeGI GKGCMC 1 cut(s) 715
BaeI ACNNNNGTAYC 2 cut(s) 338, 371
BalI TGGCCA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 739
BccI CCATC 3 cut(s) 151, 698, 771
BciT130I CCWGG 3 cut(s) 317, 369, 1097
BciVI GTATCC 1 cut(s) 366
BclI TGATCA 1 cut(s) 813
BcoDI GTCTC 1 cut(s) 109
BfaI CTAG 2 cut(s) 150, 930
BfmI CTRYAG 3 cut(s) 126, 516, 725
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 1 cut(s) 728
BlsI GCNGC 1 cut(s) 729
Bme1390I CCNGG 3 cut(s) 317, 369, 1097
Bme18I GGWCC 2 cut(s) 412, 950
BmeT110I CYCGRG 1 cut(s) 1061
BmgT120I GGNCC 3 cut(s) 4, 412, 950
BmiI GGNNCC 4 cut(s) 6, 366, 473, 783
BmrFI CCNGG 3 cut(s) 317, 369, 1097
BmrI ACTGGG 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 689
BpuEI CTTGAG 1 cut(s) 314
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 315, 583
Bse1I ACTGG 2 cut(s) 186, 251
Bse3DI GCAATG 1 cut(s) 570
BseBI CCWGG 3 cut(s) 317, 369, 1097
BseDI CCNNGG 2 cut(s) 315, 583
BseGI GGATG 3 cut(s) 143, 648, 976
BseMI GCAATG 1 cut(s) 570
BseMII CTCAG 5 cut(s) 50, 102, 220, 275, 759
BseNI ACTGG 2 cut(s) 186, 251
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 1 cut(s) 739
BshFI GGCC 3 cut(s) 5, 487, 687
BshNI GGYRCC 1 cut(s) 781
BsiHKCI CYCGRG 1 cut(s) 1061
BslFI GGGAC 2 cut(s) 116, 839
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 2 cut(s) 116, 839
BsnI GGCC 3 cut(s) 5, 487, 687
Bso31I GGTCTC 1 cut(s) 109
BsoBI CYCGRG 1 cut(s) 1061
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 3 cut(s) 280, 813, 852
BspACI CCGC 1 cut(s) 234
BspANI GGCC 3 cut(s) 5, 487, 687
BspCNI CTCAG 5 cut(s) 51, 103, 219, 276, 758
BspLI GGNNCC 4 cut(s) 6, 366, 473, 783
BspMAI CTGCAG 1 cut(s) 729
BspPI GGATC 1 cut(s) 860
BspT107I GGYRCC 1 cut(s) 781
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 570
BsrI ACTGG 2 cut(s) 186, 251
BssECI CCNNGG 2 cut(s) 315, 583
BssMI GATC 3 cut(s) 280, 813, 852
Bst2UI CCWGG 3 cut(s) 317, 369, 1097
Bst4CI ACNGT 4 cut(s) 127, 376, 517, 721
BstAPI GCANNNNNTGC 1 cut(s) 964
BstC8I GCNNGC 2 cut(s) 238, 590
BstDEI CTNAG 8 cut(s) 59, 111, 177, 206, 284, 459, 689, 745
BstF5I GGATG 3 cut(s) 143, 648, 976
BstKTI GATC 3 cut(s) 283, 816, 855
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 3 cut(s) 280, 813, 852
BstMWI GCNNNNNNNGC 2 cut(s) 632, 964
BstNI CCWGG 3 cut(s) 317, 369, 1097
BstNSI RCATGY 1 cut(s) 439
BstSCI CCNGG 3 cut(s) 315, 367, 1095
BstSFI CTRYAG 3 cut(s) 126, 516, 725
BstSLI GKGCMC 1 cut(s) 715
BstV1I GCAGC 1 cut(s) 739
BstX2I RGATCY 1 cut(s) 852
BstXI CCANNNNNNTGG 1 cut(s) 483
BstYI RGATCY 1 cut(s) 852
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 3 cut(s) 5, 487, 687
BtsCI GGATG 3 cut(s) 143, 648, 976
BtsI GCAGTG 2 cut(s) 132, 885
BtsIMutI CAGTG 4 cut(s) 132, 193, 514, 885
Cac8I GCNNGC 2 cut(s) 238, 590
CaiI CAGNNNCTG 1 cut(s) 559
Cfr13I GGNCC 3 cut(s) 4, 412, 950
Csp6I GTAC 3 cut(s) 568, 782, 1015
CviAII CATG 8 cut(s) 272, 328, 436, 577, 660, 984, 1007, 1108
CviQI GTAC 3 cut(s) 568, 782, 1015
DdeI CTNAG 8 cut(s) 59, 111, 177, 206, 284, 459, 689, 745
DpnI GATC 3 cut(s) 282, 815, 854
DpnII GATC 3 cut(s) 280, 813, 852
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 1 cut(s) 485
Eco147I AGGCCT 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 2 cut(s) 412, 950
Eco88I CYCGRG 1 cut(s) 1061
EcoRII CCWGG 3 cut(s) 315, 367, 1095
FaeI CATG 8 cut(s) 275, 331, 439, 580, 663, 987, 1010, 1111
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 2 cut(s) 116, 839
FatI CATG 8 cut(s) 271, 327, 435, 576, 659, 983, 1006, 1107
FbaI TGATCA 1 cut(s) 813
Fnu4HI GCNGC 1 cut(s) 728
FokI GGATG 3 cut(s) 130, 655, 983
Fsp4HI GCNGC 1 cut(s) 728
FspBI CTAG 2 cut(s) 150, 930
GluI GCNGC 1 cut(s) 728
HaeIII GGCC 3 cut(s) 5, 487, 687
Hin1II CATG 8 cut(s) 275, 331, 439, 580, 663, 987, 1010, 1111
HindIII AAGCTT 2 cut(s) 179, 393
HinfI GANTC 4 cut(s) 286, 556, 883, 1075
HphI GGTGA 2 cut(s) 608, 904
Hpy188I TCNGA 4 cut(s) 209, 285, 409, 703
Hpy188III TCNNGA 2 cut(s) 86, 666
HpyAV CCTTC 2 cut(s) 301, 730
HpyCH4III ACNGT 4 cut(s) 127, 376, 517, 721
HpyCH4V TGCA 7 cut(s) 240, 432, 592, 727, 958, 987, 1045
HpyF10VI GCNNNNNNNGC 2 cut(s) 632, 964
HpyF3I CTNAG 8 cut(s) 59, 111, 177, 206, 284, 459, 689, 745
Hsp92II CATG 8 cut(s) 275, 331, 439, 580, 663, 987, 1010, 1111
KpnI GGTACC 1 cut(s) 785
Ksp22I TGATCA 1 cut(s) 813
Kzo9I GATC 3 cut(s) 280, 813, 852
LmnI GCTCC 3 cut(s) 370, 868, 931
Lsp1109I GCAGC 1 cut(s) 739
MaeI CTAG 2 cut(s) 150, 930
MaeIII GTNAC 6 cut(s) 35, 152, 596, 880, 913, 1030
MalI GATC 3 cut(s) 282, 815, 854
MboI GATC 3 cut(s) 280, 813, 852
MboII GAAGA 3 cut(s) 316, 1008, 1112
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 715
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 3 cut(s) 9, 81, 169
MluNI TGGCCA 1 cut(s) 487
MlyI GAGTC 2 cut(s) 295, 877
MnlI CCTC 9 cut(s) 157, 403, 514, 534, 593, 616, 666, 773, 931
Mox20I TGGCCA 1 cut(s) 487
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 27
MslI CAYNNNNRTG 4 cut(s) 42, 575, 641, 702
Msp20I TGGCCA 1 cut(s) 487
MspR9I CCNGG 3 cut(s) 317, 369, 1097
MvaI CCWGG 3 cut(s) 317, 369, 1097
MwoI GCNNNNNNNGC 2 cut(s) 632, 964
NdeII GATC 3 cut(s) 280, 813, 852
NlaIII CATG 8 cut(s) 275, 331, 439, 580, 663, 987, 1010, 1111
NlaIV GGNNCC 4 cut(s) 6, 366, 473, 783
NmeAIII GCCGAG 1 cut(s) 564
NmuCI GTSAC 5 cut(s) 35, 152, 596, 880, 913
NspI RCATGY 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 1061
PceI AGGCCT 1 cut(s) 687
PciI ACATGT 1 cut(s) 435
PfeI GAWTC 2 cut(s) 556, 1075
PfoI TCCNGGA 1 cut(s) 367
PkrI GCNGC 1 cut(s) 729
PleI GAGTC 2 cut(s) 294, 877
PpsI GAGTC 2 cut(s) 294, 877
PscI ACATGT 1 cut(s) 435
PsiI TTATAA 1 cut(s) 467
Psp6I CCWGG 3 cut(s) 315, 367, 1095
PspGI CCWGG 3 cut(s) 315, 367, 1095
PspN4I GGNNCC 4 cut(s) 6, 366, 473, 783
PspPI GGNCC 3 cut(s) 4, 412, 950
PspXI VCTCGAGB 1 cut(s) 1061
PstI CTGCAG 1 cut(s) 729
PstNI CAGNNNCTG 1 cut(s) 559
PsuI RGATCY 1 cut(s) 852
RsaI GTAC 3 cut(s) 569, 783, 1016
RsaNI GTAC 3 cut(s) 568, 782, 1015
RseI CAYNNNNRTG 4 cut(s) 42, 575, 641, 702
SaqAI TTAA 1 cut(s) 27
SatI GCNGC 1 cut(s) 728
Sau3AI GATC 3 cut(s) 280, 813, 852
Sau96I GGNCC 3 cut(s) 4, 412, 950
SchI GAGTC 2 cut(s) 295, 877
ScrFI CCNGG 3 cut(s) 317, 369, 1097
SduI GDGCHC 1 cut(s) 715
SfcI CTRYAG 3 cut(s) 126, 516, 725
Sfr274I CTCGAG 1 cut(s) 1061
SinI GGWCC 2 cut(s) 412, 950
SlaI CTCGAG 1 cut(s) 1061
SmiMI CAYNNNNRTG 4 cut(s) 42, 575, 641, 702
SmlI CTYRAG 2 cut(s) 293, 1061
SmoI CTYRAG 2 cut(s) 293, 1061
Sse9I AATT 3 cut(s) 9, 81, 169
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 1 cut(s) 234
SspMI CTAG 2 cut(s) 150, 930
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 3 cut(s) 315, 367, 1095
TaaI ACNGT 4 cut(s) 127, 376, 517, 721
TaqI TCGA 1 cut(s) 1062
TasI AATT 3 cut(s) 9, 81, 169
TatI WGTACW 2 cut(s) 567, 1014
TfiI GAWTC 2 cut(s) 556, 1075
Tru1I TTAA 1 cut(s) 27
Tru9I TTAA 1 cut(s) 27
TscAI CASTG 4 cut(s) 139, 193, 514, 885
TseFI GTSAC 5 cut(s) 35, 152, 596, 880, 913
TseI GCWGC 1 cut(s) 727
Tsp45I GTSAC 5 cut(s) 35, 152, 596, 880, 913
TspDTI ATGAA 4 cut(s) 216, 316, 659, 987
TspRI CASTG 4 cut(s) 139, 193, 514, 885
VpaK11BI GGWCC 2 cut(s) 412, 950
XceI RCATGY 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 1061
XspI CTAG 2 cut(s) 150, 930
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.