AT1G55350

Belongs to the peptidase C2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007783
Physical Location & Seq
Reverse (-)
20653740 .. 20665110
11371 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55350.3

Sequence Viewer

Length: 6456 bp
ATGGAAGGGGATGAGCGAGGAGTCTTACTTGCTTGTGTAATTTCGGGTACCCTTTTCACGGTTTTCGGTTCGGGTTCGTTTTGGATACTTTGGGCTGTTAATTGGCGGCCATGGCGTCTCTACAGTTGGATCTTTGCTAGAAAATGGCCAAAAGTATTGCAAGGTCCTCAGCTTGATATACTATGTGGTGTTCTATCTCTTTTTGCTTGGATTGTGGTAGTATCCCCTATTGCAATCTTGATAGGATGGGGTTCTTGGCTGATTGTGATATTGGATCGACATATCATTGGGCTGGCGATAATAATGGCTGGAACAGCCCTTTTACTGGCATTCTACTCAATCATGCTTTGGTGGAGGACCCAGTGGCAAAGCTCAAGAGCTGTCGCTTTACTTCTCCTTCTTGGTGTTGCCTTACTATGTGCGTATGAACTCTGTGCTGTCTATGTTACGGCTGGTGCGCATGCATCTCAGCAATATTCTCCTTCTGGTTTCTTTTTCGGTGTATCAGCAATCGCGTTGGCAATTAACATGCTATTTATCTGCCGCATGGTCTTTAATGGAAATGGTTTAGATGTGGACGAATATGTAAGGAGGGCATATAAATTTGCTTATTCAGATTGTATAGAAGTGGGTCCTGTGGCTTGTTTGCCTGAACCTCCTGATCCTAATGAATTATATCCCCGGCAAACCAGCAGGGCTTCACATCTTGGCCTTCTGTACCTGGGCTCACTCGTAGTTCTCCTTGCCTACTCAGTCCTATATGGTCTCACAGCTAGGGAATCACGTTGGCTTGGAGGAATCACATCAGCTGCAGTTATTGTTCTTGACTGGAATATTGGGGCATGCTTGTATGGGTTTAAGCTTCTTCAGAATCGTGTTCTGGCACTTTTTGTTGCTGGCATATCCCGTCTTTTCCTAATATGTTTTGGCATACACTACTGGTACCTAGGGCATTGTATTAGTTACATTTTCGTAGCATCAGTTCTATCAGGTGCTGCTGTTTCTCGGCATCTATCTATAACAGACCCATCAGCTGCAAGAAGAGATGCCTTACAGAGCACAGTGATCCGCTTGAGAGAAGGTTTTCGGAGAAAAGAGCAGAATAGTTCTTCAAGTTCTTCAGATGGTTGTGGCTCAAGTATAAAAAGAAGTAGTAGTATCGATGCTGGCCATACTGGTTGTACTAATGAAGCAAATCGTACGGCAGAATCTTGCACGGCTGACAATCTAACTCGAACAGGCAGCTCTCAGGAGGGAATCAATAGCGACAAAAGCGAAGAAAGTGGAAGACCAAGCTTAGGTTTACGTAGTAGTTCATGTCGTTCTGTGGTCCAAGAGCCCGAAGCAGGAACGTCTTATTTTATGGACAAAGTTTCTGATCAAAATAACACTCTTGTTGTTTGTTCGAGCAGTGGTCTAGATAGCCAAGGTTACGAGTCTAGCACATCGAATTCTGCAAACCAGCAGCTTTTGGATATGAATTTGGCTCTTGCTTTCCAGGACCAGTTAAACAATCCTAGGATAGCCTCGATACTTAAGAAGAAAGCAAAAGAAGGTGATCTTGAACTGACTAATTTGCTGCAAGACAAGGGGTTGGACCCTAACTTTGCTGTAATGTTGAAGGAAAAAAACTTGGATCCTACTATATTGGCACTACTTCAGAGGAGTAGTTTGGATGCAGATAGAGATCACCGCGACAATACTGATATTACAATCATTGACTCAAACAGTGTTGACAATACTTTGCCAAATCAGATTTCTTTATCCGAAGAATTGAGACTCCGTGGACTAGAGAAGTGGCTTAAGTTGTCTAGACTTCTTCTGCACCATGTAGCGGGGACACCAGAGAGAGCATGGGGCCTCTTTAGTCTTGTCTTTATCCTTGAAACAATCATTGTGGCCATTTTTCGCCCAAAGACCATCACGATTATAAATTCTAGTCATCAACAGTTCGAATTTGGTTTCTCTGTGCTGCTATTGTCACCTGTTGTCTGTTCAATAATGGCTTTTCTTCGGTCTCTTCAAGTTGAGGAAATGGCCTTGACATCAAAATCTCGCAAGTATGGCTTTGTTGCCTGGCTTCTGAGCACATCAGTTGGATTGTCACTCTCGTTCTTGAGTAAATCGTCAGTACTTCTGGGAATATCCTTGACTGTGCCCCTCATGGCAGCATGCCTGTCTATTGCTGTTCCCATATGGATGCATAATGGGTACCAATTTTGGGTTCCACAGTTATCATGTGGTGACCAGGCAAGAGATTTACGATCTCCCAGGATAAAGGGGTTTATTCTTTGGATTTGTGTTGTGTTGTTTGCGGGTTCTGTAATTTCTCTTGGTGCGATTATATCTGCTAAACCTTTGGATGATTTAAAGTATAAGCTGTTTAGTGCCAGAGAAAACAACGTCACGTCACCATATACATCTTCTGTATACCTTGGTTGGGCAATGTCATCTGGAATTGCTTTAGTAGTTACCGCCATTCTACCAATAGTTTCATGGTTTGCAACTTATAGGTTTTCCCACTCTTCTGCTGTCTGTCTCATGATATTCTCAGTTGTTCTCGTGGCATTTTGTGGAACTTCATATTTGGAAGTTGTAAAATCTAGAGATGATCAGTTGCCCACAAAGGGTGATTTCCTTGCGGCCTTGCTTCCACTTGCATGCATTCCGGCGCTGCTTTCACTATGCTGTGGGATGGTTAAATGGAAGGACGATTGTTGGATACTCTCTCGAGGTGTATATGTTTTCTTTTCAATAGGTCTTCTTCTTCTTTTTGGTGCGATAGCAGCTGTCATTGCAGTCAAACCATGGACGATAGGCGTATCTTTTCTCTTAGTTCTTTTCCTTATGGTGGTAACAATTGGTGTAATCCATCTTTGGGCGTCAAACAATTTCTATTTAACCAGGAAACAGACATCCTTTGTCTGCTTTCTTGCTCTTCTTTTGGGTTTGGCCGCATTCCTTCTCGGATGGCATCAAGATAAAGCATTTGCTGGAGCATCTGTTGGTTACTTTACATTCCTGTCTCTGTTGGCTGGAAGAGCATTAGCTGTTCTTCTATCCCCACCAATTGTAGTATATTCTCCAAGGGTGCTACCAGTATATGTCTACGATGCTCATGCTGATTGCGGAAAGAATGTCAGTGCTGCATTTCTTGTCCTGTATGGAATTGCTTTGGCAACAGAAGGCTGGGGTGTTGTTGCTAGTCTGATAATTTATCCTCCGTTTGCGGGTGCTGCTGTATCAGCTATCACCCTTGTAGTAGCCTTTGGGTTTGCTGTTTCTCGCCCATGTTTGACTCTTGAGATGATGGAGGTTGCTGTACGCTTTCTTAGCAAGGATACTATAGTGCAAGCTATCTCTCGATCTGCCACGAAAACAAGAAATGCTCTATCCGGCACGTATTCAGCTCCCCAAAGGTCCGCCAGCTCTGCAGCTCTTCTGGTTGGGGATCCCTCTGCAATGCGTGATAAAGCAGGGAACTTTGTGCTTCCTAGAGATGATGTCATGAAATTAAGGGATCGTCTCAGGAACGAAGAAAGAGTTGCTGGATCAATCTTCTACAAAATGCAATGCAGGAAAGGATTCCGTCATGAACCACCTACAAATGTAGATTATAGAAGAGACATGTGTGCCCATGCAAGAGTTTTGGCACTGGAAGAGGCAATTGATACAGAATGGGTGTATATGTGGGACAAATTTGGTGGTTATTTACTACTATTGTTAGGTTTGACAGCTAAGGCGGAGAGAGTTCAGGATGAGGTACGGTTGCGGCTCTTCTTAGATAGCATTGGGTTCTCGGATTTAAGTGCCAGAAAAATCAGTAAATGGAAGCCAGAGGATAGAAGACAATTCGAAATTATTCAAGAGAGTTATCTGAGAGAGAAAGAGATGGAAGAGGAAAGCCTTATGCAGAGACGTGAAGAAGAAGGGAGAGGTAAAGAAAGAAGGAAAGCTCTTTTGGAGAAGGAAGAGCGCAAATGGAAGGAAATTGAAGCGTCCCTTATTCCATCTATTCCTAATGCTGGTAGCAGGGAGGCAGCAGCCATGGCAGCTGCAATACGTGCTGTTGGGGGTGATTCTGTCCTTGAGGATTCCTTCGCAAGAGAGAGGGTCTCGGGTATTGCACGTAGGATACGCACTGCTCAACTAGAACGACGTGCACAACAGACTGGAATATCTGGGGCAGTTTGTGTTCTTGATGATGAACCAATGATAAGTGGTAAACATTGCGGCCAAATGGACTCAAGTGTCTGTCAAAGTCAGAAGATTAGCTTTTCCGTTACAGCAATGATCCAATCCGATTCTGGACCTGTATGTCTTTTTGGCACTGAATTTCAAAAGAAAGTATGTTGGGAGATTCTGGTTGCTGGTTCTGAGCAAGGAATTGAGGCTGGCCAAGTTGGGCTTAGGTTGATAACAAAAGGTGAGAGGCAGACAACCGTTGCTAGAGAGTGGTATATTGGTGCAACCAGCATAACTGATGGAAGGTGGCATACAGTGACAATCACAATTGATGCTGATGCGGGGGAAGCTACTTGTTACATAGATGGTGGGTTTGATGGCTACCAGAATGGGTTACCTCTAAGTATTGGCAGTGCCATTTGGGAACAAGGAGCTGAAGTTTGGTTGGGTGTTAGGCCACCTATAGATGTTGATGCATTCGGGAGATCAGATAGTGATGGCGTCGAATCAAAGATGCATATTATGGATGTTTTCCTTTGGGGGAAATGCTTAAGTGAAGAAGAGGCCGCTTCTTTGCATGCAGCCATTGGCATGGCTGACTTAGACATGATTGATTTGTCTGATGACAATTGGCAATGGACGGATTCACCCCCCAGAGTCGATGGTTGGGATAGTGATCCTGCCGATGTTGATCTCTATGATAGGGATGACGTAGATTGGGATGGACAATATTCCAGTGGGAGGAAAAGAAGATCAGGTCGGGATTTTGTAATGAGTGTCGATTCCTTTGCCAGGAGACACAGGAAACCCAGGATGGAGACACAAGAAGATATAAATCAAAGAATGCGTTCAGTTGAGTTGGCTGTCAAAGAAGCTCTCTCTGCACGAGGTGATAAGCAATTTACTGACCAGGAATTTCCTCCAAATGATCGCTCTTTATTTGTGGATACACAAAATCCCCCATCAAAATTGCAGGTTGTTTCTGAATGGATGAGACCTGACTCCATTGTGAAAGAAAACGGTAGTGATTCCCGTCCCTGCCTGTTCTCTGGGGATGCAAATCCTTCAGATGTTTGCCAGGGGCGTTTGGGGGATTGTTGGTTCTTAAGCGCCGTTGCAGTTTTGACAGAGGTTTCACGAATATCTGAAGTGATCATTACTCCTGAATACAACGAGGAAGGGATCTACACTGTTCGTTTTTGTATTCAGGGTGAGTGGGTTCCTGTTGTTATCGATGACTGGATTCCATGTGAATCACCTGGTAAACCAGCTTTTGCTACTAGCAGAAAGCTCAATGAACTCTGGGTCTCCATGGTGGAGAAAGCATATGCCAAGCTCCATGGTTCTTATGAGGCACTGGAGGGGGGACTGGTTCAGGATGCTCTTGTCGACCTAACTGGAGGAGCTGGTGAGGAGATTGACTTGCGGAGTGCTCAAGCACAAATAGATCTTGCAAGTGGCAGATTGTGGTCTCAATTGTTACGTTTTAAACAAGAGGGGTTCTTACTTGGTGCTGGAAGTCCATCAGGATCTGATGTTCATGTATCTTCCAGTGGCATTGTGCAAGGGCATGCTTACTCCGTCTTACAGGTGAGAGAGGTTGATGGGCACAGACTTGTTCAGATTCGAAATCCATGGGCTAATGAAGTTGAGTGGAATGGTCCCTGGTCAGACTCATCCCCAGAGTGGACTGATAGGATGAAGCACAAGCTGAAGCATGTTCCACAGTCAAAAGAAGGTATATTCTGGATGTCTTGGCAAGATTTCCAGATTCATTTCAGATCAATATATGTGTGTCGGGTTTACCCCCGTGAGATGCGCTACTCTGTAAATGGCCAATGGCGAGGTTATAGTGCCGGTGGCTGCCAAGATTATAGCTCATGGCATCAAAATCCACAATTCAGGCTGAGGGCAACTGGTTCTGATGCATCTTTACCAATTCATGTGTTCATCACCTTAACTCAGGGCGTAGGTTTCTCGAGAACAACTCCTGGATTTCGTAACTACCAATCAAGCCATGATTCACAGTTGTTCTATATCGGATTGAGGATTCTTAAAACTCGTGGACGTCGTGCTGCTTACAACATATTTCTTCATGAATCTGTTGGTGGAACAGACTATGTGAATTCCCGTGAGATTTCATGTGAAATGGTTCTTGACCCTGATCCTAAGGGTTATACTATTGTCCCAACCACGATACACCCAGGGGAAGAAGCACCTTTTGTCCTTTCAGTCTTCACAAAAGCATCCATTGTTCTTGAAGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001558 GO:0001708 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0004198 GO:0005198 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0005887 GO:0006275 GO:0006355 GO:0006508 GO:0006807 GO:0006873 GO:0006874 GO:0006875 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007204 GO:0007275 GO:0008092 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0008307 GO:0009628 GO:0009651 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009934 GO:0009966 GO:0009987 GO:0010008 GO:0010035 GO:0010038 GO:0010154 GO:0010468 GO:0010522 GO:0010524 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010927 GO:0010941 GO:0010959 GO:0012505 GO:0014717 GO:0014718 GO:0014823 GO:0014850 GO:0016020 GO:0016021 GO:0016043 GO:0016787 GO:0019219 GO:0019222 GO:0019538 GO:0019725 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0030003 GO:0030016 GO:0030017 GO:0030018 GO:0030029 GO:0030036 GO:0030154 GO:0030162 GO:0030234 GO:0030239 GO:0030315 GO:0031032 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031402 GO:0031410 GO:0031420 GO:0031432 GO:0031674 GO:0031982 GO:0031984 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032875 GO:0032877 GO:0032879 GO:0032947 GO:0032989 GO:0032991 GO:0033036 GO:0033233 GO:0033234 GO:0033554 GO:0034613 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0040008 GO:0042127 GO:0042175 GO:0042221 GO:0042383 GO:0042592 GO:0042692 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043122 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043269 GO:0043270 GO:0043292 GO:0043415 GO:0043416 GO:0043933 GO:0044085 GO:0044093 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044449 GO:0044459 GO:0044464 GO:0045165 GO:0045214 GO:0045740 GO:0045787 GO:0045862 GO:0045892 GO:0045893 GO:0045927 GO:0045934 GO:0045935 GO:0046872 GO:0048316 GO:0048468 GO:0048509 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048583 GO:0048584 GO:0048608 GO:0048638 GO:0048639 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050801 GO:0050865 GO:0050867 GO:0050896 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051090 GO:0051091 GO:0051092 GO:0051094 GO:0051128 GO:0051146 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051279 GO:0051281 GO:0051282 GO:0051480 GO:0051592 GO:0051641 GO:0051716 GO:0051726 GO:0051924 GO:0051928 GO:0055001 GO:0055002 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0055103 GO:0060255 GO:0060341 GO:0060548 GO:0061041 GO:0061061 GO:0061458 GO:0065003 GO:0065007 GO:0065008 GO:0065009 GO:0070011 GO:0070727 GO:0070887 GO:0070925 GO:0071214 GO:0071241 GO:0071248 GO:0071277 GO:0071470 GO:0071472 GO:0071704 GO:0071840 GO:0071944 GO:0072503 GO:0072507 GO:0072657 GO:0080050 GO:0080090 GO:0080134 GO:0090068 GO:0090303 GO:0090329 GO:0090392 GO:0090627 GO:0090628 GO:0097264 GO:0097435 GO:0097708 GO:0098588 GO:0098771 GO:0098772 GO:0098805 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0104004 GO:0140096 GO:1901564 GO:1902531 GO:1902679 GO:1902680 GO:1903034 GO:1903036 GO:1903169 GO:1903320 GO:1903321 GO:1903506 GO:1903507 GO:1903508 GO:1904062 GO:1904064 GO:1904427 GO:2000011 GO:2000014 GO:2000024 GO:2000026 GO:2000105 GO:2000112 GO:2000113 GO:2000241 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calpain_III Peptidase_C2

Protein Analysis

2151

Amino Acids

238.26

Weight (kDa)

6.15

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C2 PF00648 1696 - 1995 7e-88 Calpain family cysteine protease
Calpain_III PF01067 2006 - 2141 5.8e-16 Calpain large subunit, domain III
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1931
AasI GACNNNNNNGTC 2 cut(s) 4250, 4317
AatII GACGTC 1 cut(s) 6256
Acc16I TGCGCA 1 cut(s) 459
Acc36I ACCTGC 1 cut(s) 5149
Acc65I GGTACC 3 cut(s) 47, 942, 2211
AccB1I GGYRCC 3 cut(s) 47, 942, 2211
AccI GTMKAC 3 cut(s) 2430, 3108, 5574
AccII CGCG 2 cut(s) 515, 1695
AcoI YGGCCR 8 cut(s) 107, 146, 1168, 1899, 2952, 4234, 4396, 6019
AcsI RAATTY 9 cut(s) 602, 1450, 1480, 1933, 1955, 3698, 4334, 5099, 6310
AcuI CTGAAG 7 cut(s) 851, 1104, 1643, 4641, 5235, 5352, 5918
AcyI GRCGYC 4 cut(s) 115, 2882, 4686, 6253
AdeI CACNNNGTG 1 cut(s) 5075
AfaI GTAC 9 cut(s) 49, 719, 944, 1183, 1201, 2133, 2213, 3324, 3765
AflII CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
AflIII ACRYGT 1 cut(s) 3627
AjiI CACGTC 3 cut(s) 2409, 3920, 4160
AjuI GAANNNNNNNTTGG 6 cut(s) 1741, 1773, 2208, 2240, 3944, 3976
AloI GAACNNNNNNTCC 4 cut(s) 5270, 5302, 5706, 5738
Alw21I GWGCWC 4 cut(s) 1061, 2090, 4165, 5620
Alw44I GTGCAC 1 cut(s) 4161
AlwNI CAGNNNCTG 2 cut(s) 995, 5717
Ama87I CYCGRG 3 cut(s) 2730, 4117, 6163
ApaLI GTGCAC 1 cut(s) 4161
ApoI RAATTY 9 cut(s) 602, 1450, 1480, 1933, 1955, 3698, 4334, 5099, 6310
ArsI GACNNNNNNTTYG 2 cut(s) 1589, 1621
Asp700I GAANNNNTTC 5 cut(s) 1083, 3584, 3861, 5032, 6336
Asp718I GGTACC 3 cut(s) 47, 942, 2211
AspA2I CCTAGG 2 cut(s) 946, 1517
AspLEI GCGC 5 cut(s) 460, 2674, 3978, 5297, 6006
AsuC2I CCSGG 1 cut(s) 682
AsuII TTCGAA 3 cut(s) 1953, 3855, 5812
AvaI CYCGRG 3 cut(s) 2730, 4117, 6163
AvaII GGWCC 9 cut(s) 164, 357, 632, 1330, 1501, 1597, 3420, 4310, 5846
AvrII CCTAGG 2 cut(s) 946, 1517
AxyI CCTNAGG 1 cut(s) 6354
BaeGI GKGCMC 4 cut(s) 2160, 3637, 4165, 5796
BaeI ACNNNNGTAYC 2 cut(s) 3333, 3366
BalI TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
BamHI GGATCC 2 cut(s) 1636, 3451
BanI GGYRCC 3 cut(s) 47, 942, 2211
BanII GRGCYC 2 cut(s) 728, 1341
BarI GAAGNNNNNNTAC 2 cut(s) 4480, 4512
BauI CACGAG 3 cut(s) 2561, 5070, 6246
BbsI GAAGAC 4 cut(s) 1294, 2753, 3853, 6412
Bbv12I GWGCWC 4 cut(s) 1061, 2090, 4165, 5620
BbvCI CCTCAGC 2 cut(s) 168, 6092
BceAI ACGGC 4 cut(s) 465, 1218, 1233, 5282
BcgI CGANNNNNNTGC 4 cut(s) 3101, 3135, 4955, 4989
BciVI GTATCC 6 cut(s) 78, 232, 2715, 3334, 4128, 5125
BclI TGATCA 3 cut(s) 1378, 2611, 5337
BcnI CCSGG 1 cut(s) 682
BfmI CTRYAG 5 cut(s) 121, 810, 3345, 3432, 4647
BfoI RGCGCY 2 cut(s) 2675, 5298
BfrI CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
BfuAI ACCTGC 1 cut(s) 5149
BfuI GTATCC 6 cut(s) 78, 232, 2715, 3334, 4128, 5125
BglII AGATCT 1 cut(s) 5632
BlnI CCTAGG 2 cut(s) 946, 1517
BmcAI AGTACT 1 cut(s) 2133
Bme18I GGWCC 9 cut(s) 164, 357, 632, 1330, 1501, 1597, 3420, 4310, 5846
BmeT110I CYCGRG 3 cut(s) 2730, 4117, 6163
BmgBI CACGTC 3 cut(s) 2409, 3920, 4160
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 4 cut(s) 1294, 2753, 3853, 6412
BplI GAGNNNNNCTC 4 cut(s) 4100, 4132, 6157, 6189
BpmI CTGGAG 3 cut(s) 3015, 5564, 5604
Bpu10I CCTNAGC 5 cut(s) 168, 1297, 3738, 4409, 6092
Bpu14I TTCGAA 3 cut(s) 1953, 3855, 5812
BpuEI CTTGAG 8 cut(s) 358, 1093, 1120, 2137, 3323, 4109, 4231, 5604
BpuMI CCSGG 1 cut(s) 682
Bsa29I ATCGAT 2 cut(s) 1161, 5418
BsaAI YACGTR 4 cut(s) 1307, 3402, 4064, 4130
BsaBI GATNNNNATC 5 cut(s) 1686, 4860, 4875, 5019, 5244
BsaHI GRCGYC 4 cut(s) 115, 2882, 4686, 6253
BsaI GGTCTC 6 cut(s) 770, 2022, 4120, 5173, 5497, 5661
BsaXI ACNNNNNCTCC 4 cut(s) 2988, 3018, 4608, 4638
Bse118I RCCGGY 1 cut(s) 6041
Bse21I CCTNAGG 1 cut(s) 6354
Bse3DI GCAATG 7 cut(s) 2451, 2793, 3468, 3578, 4228, 4296, 4826
Bse8I GATNNNNATC 5 cut(s) 1686, 4860, 4875, 5019, 5244
BseCI ATCGAT 2 cut(s) 1161, 5418
BseJI GATNNNNATC 5 cut(s) 1686, 4860, 4875, 5019, 5244
BseMI GCAATG 7 cut(s) 2451, 2793, 3468, 3578, 4228, 4296, 4826
BseRI GAGGAG 4 cut(s) 33, 1678, 5601, 5612
BseSI GKGCMC 4 cut(s) 2160, 3637, 4165, 5796
BseYI CCCAGC 1 cut(s) 3189
BsgI GTGCAG 2 cut(s) 1808, 5052
Bsh1236I CGCG 2 cut(s) 515, 1695
BshNI GGYRCC 3 cut(s) 47, 942, 2211
BshVI ATCGAT 2 cut(s) 1161, 5418
BsiHKAI GWGCWC 4 cut(s) 1061, 2090, 4165, 5620
BsiHKCI CYCGRG 3 cut(s) 2730, 4117, 6163
BsiSI CCGG 4 cut(s) 682, 2669, 3396, 6042
BsiWI CGTACG 1 cut(s) 1199
BslFI GGGAC 7 cut(s) 1852, 3707, 3985, 5205, 5565, 5832, 6356
BsmBI CGTCTC 3 cut(s) 122, 3530, 3910
BsmFI GGGAC 7 cut(s) 1852, 3707, 3985, 5205, 5565, 5832, 6356
BsmI GAATGC 5 cut(s) 329, 2664, 2957, 4661, 5034
Bso31I GGTCTC 6 cut(s) 770, 2022, 4120, 5173, 5497, 5661
BsoBI CYCGRG 3 cut(s) 2730, 4117, 6163
Bsp119I TTCGAA 3 cut(s) 1953, 3855, 5812
Bsp1286I GDGCHC 9 cut(s) 728, 1061, 1341, 2090, 2160, 3637, 4165, 5620, 5796
Bsp19I CCATGG 6 cut(s) 110, 2807, 4047, 5496, 5524, 5819
BspDI ATCGAT 2 cut(s) 1161, 5418
BspFNI CGCG 2 cut(s) 515, 1695
BspHI TCATGA 4 cut(s) 2541, 3507, 3592, 6280
BspMAI CTGCAG 2 cut(s) 814, 3436
BspMI ACCTGC 1 cut(s) 5149
BspQI GCTCTTC 5 cut(s) 2943, 3034, 3444, 3782, 3966
BspT104I TTCGAA 3 cut(s) 1953, 3855, 5812
BspT107I GGYRCC 3 cut(s) 47, 942, 2211
BspTI CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
BspTNI GGTCTC 6 cut(s) 770, 2022, 4120, 5173, 5497, 5661
BsrDI GCAATG 7 cut(s) 2451, 2793, 3468, 3578, 4228, 4296, 4826
BsrFI RCCGGY 1 cut(s) 6041
BssAI RCCGGY 1 cut(s) 6041
BssNAI GTATAC 1 cut(s) 2431
BssNI GRCGYC 4 cut(s) 115, 2882, 4686, 6253
BssSI CACGAG 3 cut(s) 2561, 5070, 6246
Bst1107I GTATAC 1 cut(s) 2431
Bst2BI CACGAG 3 cut(s) 2561, 5070, 6246
BstACI GRCGYC 4 cut(s) 115, 2882, 4686, 6253
BstAFI CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
BstAPI GCANNNNNTGC 1 cut(s) 4064
BstBAI YACGTR 4 cut(s) 1307, 3402, 4064, 4130
BstBI TTCGAA 3 cut(s) 1953, 3855, 5812
BstDSI CCRYGG 7 cut(s) 110, 1783, 2807, 4047, 5496, 5524, 5819
BstEII GGTNACC 2 cut(s) 2243, 4578
BstENI CCTNNNNNAGG 1 cut(s) 4975
BstFNI CGCG 2 cut(s) 515, 1695
BstH2I RGCGCY 2 cut(s) 2675, 5298
BstHHI GCGC 5 cut(s) 460, 2674, 3978, 5297, 6006
BstNSI RCATGY 9 cut(s) 464, 532, 846, 2175, 2664, 3631, 4766, 5759, 5906
BstPI GGTNACC 2 cut(s) 2243, 4578
BstSFI CTRYAG 5 cut(s) 121, 810, 3345, 3432, 4647
BstSLI GKGCMC 4 cut(s) 2160, 3637, 4165, 5796
BstSNI TACGTA 1 cut(s) 1307
BstUI CGCG 2 cut(s) 515, 1695
BstV2I GAAGAC 4 cut(s) 1294, 2753, 3853, 6412
BstX2I RGATCY 6 cut(s) 129, 1636, 3451, 5367, 5632, 5714
BstXI CCANNNNNNTGG 1 cut(s) 4777
BstYI RGATCY 6 cut(s) 129, 1636, 3451, 5367, 5632, 5714
BstZ17I GTATAC 1 cut(s) 2431
Bsu15I ATCGAT 2 cut(s) 1161, 5418
Bsu36I CCTNAGG 1 cut(s) 6354
BsuI GTATCC 6 cut(s) 78, 232, 2715, 3334, 4128, 5125
BsuTUI ATCGAT 2 cut(s) 1161, 5418
BtgI CCRYGG 7 cut(s) 110, 1783, 2807, 4047, 5496, 5524, 5819
BtrI CACGTC 3 cut(s) 2409, 3920, 4160
BtsI GCAGTG 3 cut(s) 1417, 4140, 4603
BveI ACCTGC 1 cut(s) 5149
CaiI CAGNNNCTG 2 cut(s) 995, 5717
CciI TCATGA 4 cut(s) 2541, 3507, 3592, 6280
CfoI GCGC 5 cut(s) 460, 2674, 3978, 5297, 6006
Cfr10I RCCGGY 1 cut(s) 6041
ClaI ATCGAT 2 cut(s) 1161, 5418
CseI GACGC 4 cut(s) 104, 2871, 3987, 4675
CsiI ACCWGGT 1 cut(s) 5443
Csp6I GTAC 9 cut(s) 48, 718, 943, 1182, 1200, 2132, 2212, 3323, 3764
CspCI CAANNNNNGTGG 4 cut(s) 1878, 1913, 3685, 3720
CviQI GTAC 9 cut(s) 48, 718, 943, 1182, 1200, 2132, 2212, 3323, 3764
DraI TTTAAA 2 cut(s) 2370, 5674
DraIII CACNNNGTG 1 cut(s) 5075
DrdI GACNNNNNNGTC 2 cut(s) 4250, 4317
DseDI GACNNNNNNGTC 2 cut(s) 4250, 4317
EaeI YGGCCR 8 cut(s) 107, 146, 1168, 1899, 2952, 4234, 4396, 6019
EciI GGCGGA 2 cut(s) 3412, 3758
Eco105I TACGTA 1 cut(s) 1307
Eco24I GRGCYC 2 cut(s) 728, 1341
Eco31I GGTCTC 6 cut(s) 770, 2022, 4120, 5173, 5497, 5661
Eco47I GGWCC 9 cut(s) 164, 357, 632, 1330, 1501, 1597, 3420, 4310, 5846
Eco57I CTGAAG 7 cut(s) 851, 1104, 1643, 4641, 5235, 5352, 5918
Eco81I CCTNAGG 1 cut(s) 6354
Eco88I CYCGRG 3 cut(s) 2730, 4117, 6163
Eco91I GGTNACC 2 cut(s) 2243, 4578
EcoNI CCTNNNNNAGG 1 cut(s) 4975
EcoO109I RGGNCCY 4 cut(s) 164, 357, 632, 1858
EcoO65I GGTNACC 2 cut(s) 2243, 4578
EcoRI GAATTC 2 cut(s) 1450, 6310
EcoT22I ATGCAT 6 cut(s) 466, 2205, 2666, 4663, 4704, 6115
EcoT38I GRGCYC 2 cut(s) 728, 1341
Esp3I CGTCTC 3 cut(s) 122, 3530, 3910
FaqI GGGAC 7 cut(s) 1852, 3707, 3985, 5205, 5565, 5832, 6356
FauI CCCGC 4 cut(s) 1828, 2308, 3223, 4519
FauNDI CATATG 2 cut(s) 2195, 5512
FbaI TGATCA 3 cut(s) 1378, 2611, 5337
FblI GTMKAC 3 cut(s) 2430, 3108, 5574
FriOI GRGCYC 2 cut(s) 728, 1341
FspAI RTGCGCAY 1 cut(s) 459
FspI TGCGCA 1 cut(s) 459
GlaI GCGC 5 cut(s) 459, 2673, 3977, 5296, 6005
GsaI CCCAGC 1 cut(s) 3193
GsuI CTGGAG 3 cut(s) 3015, 5564, 5604
HaeII RGCGCY 2 cut(s) 2675, 5298
HapII CCGG 4 cut(s) 682, 2669, 3396, 6042
HgaI GACGC 4 cut(s) 104, 2871, 3987, 4675
HhaI GCGC 5 cut(s) 460, 2674, 3978, 5297, 6006
Hin1I GRCGYC 4 cut(s) 115, 2882, 4686, 6253
Hin6I GCGC 5 cut(s) 458, 2672, 3976, 5295, 6004
HinP1I GCGC 5 cut(s) 458, 2672, 3976, 5295, 6004
HincII GTYRAC 2 cut(s) 1735, 5575
HindII GTYRAC 2 cut(s) 1735, 5575
HindIII AAGCTT 3 cut(s) 860, 1294, 6447
HpaII CCGG 4 cut(s) 682, 2669, 3396, 6042
Hpy99I CGWCG 3 cut(s) 4161, 4691, 6258
Hsp92I GRCGYC 4 cut(s) 115, 2882, 4686, 6253
HspAI GCGC 5 cut(s) 458, 2672, 3976, 5295, 6004
KpnI GGTACC 3 cut(s) 51, 946, 2215
Ksp22I TGATCA 3 cut(s) 1378, 2611, 5337
LguI GCTCTTC 5 cut(s) 2943, 3034, 3444, 3782, 3966
LmnI GCTCC 5 cut(s) 2996, 3415, 4616, 5526, 5588
MabI ACCWGGT 1 cut(s) 5443
MfeI CAATTG 6 cut(s) 2859, 3069, 3666, 4512, 4813, 5660
MflI RGATCY 6 cut(s) 129, 1636, 3451, 5367, 5632, 5714
MhlI GDGCHC 9 cut(s) 728, 1061, 1341, 2090, 2160, 3637, 4165, 5620, 5796
MlsI TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
MluNI TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
MlyI GAGTC 9 cut(s) 30, 1445, 1715, 1773, 3292, 4238, 4851, 5180, 5852
MmeI TCCRAC 4 cut(s) 107, 1575, 2077, 2699
Mox20I TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
Mph1103I ATGCAT 6 cut(s) 466, 2205, 2666, 4663, 4704, 6115
MroXI GAANNNNTTC 5 cut(s) 1083, 3584, 3861, 5032, 6336
MscI TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
MslI CAYNNNNRTG 3 cut(s) 2198, 2659, 4775
Msp20I TGGCCA 5 cut(s) 148, 1170, 1901, 4398, 6021
MspA1I CMGCKG 4 cut(s) 809, 1034, 2789, 4055
MspCI CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
MspI CCGG 4 cut(s) 682, 2669, 3396, 6042
MunI CAATTG 6 cut(s) 2859, 3069, 3666, 4512, 4813, 5660
Mva1269I GAATGC 5 cut(s) 329, 2664, 2957, 4661, 5034
MvnI CGCG 2 cut(s) 515, 1695
NciI CCSGG 1 cut(s) 682
NcoI CCATGG 6 cut(s) 110, 2807, 4047, 5496, 5524, 5819
NdeI CATATG 2 cut(s) 2195, 5512
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 6 cut(s) 1980, 2103, 2243, 2404, 2409, 4501
NsbI TGCGCA 1 cut(s) 459
NsiI ATGCAT 6 cut(s) 466, 2205, 2666, 4663, 4704, 6115
NspI RCATGY 9 cut(s) 464, 532, 846, 2175, 2664, 3631, 4766, 5759, 5906
NspV TTCGAA 3 cut(s) 1953, 3855, 5812
PaeI GCATGC 6 cut(s) 464, 846, 2175, 2664, 4766, 5759
PaeR7I CTCGAG 2 cut(s) 2730, 6163
PagI TCATGA 4 cut(s) 2541, 3507, 3592, 6280
PasI CCCWGGG 1 cut(s) 6389
PciI ACATGT 1 cut(s) 3627
PciSI GCTCTTC 5 cut(s) 2943, 3034, 3444, 3782, 3966
PcsI WCGNNNNNNNCGW 1 cut(s) 6253
PctI GAATGC 5 cut(s) 329, 2664, 2957, 4661, 5034
PdmI GAANNNNTTC 5 cut(s) 1083, 3584, 3861, 5032, 6336
Pfl23II CGTACG 1 cut(s) 1199
PfoI TCCNGGA 2 cut(s) 1497, 6175
PleI GAGTC 9 cut(s) 29, 1444, 1715, 1773, 3292, 4238, 4850, 5180, 5852
PpsI GAGTC 9 cut(s) 29, 1444, 1715, 1773, 3292, 4238, 4850, 5180, 5852
Ppu21I YACGTR 4 cut(s) 1307, 3402, 4064, 4130
PpuMI RGGWCCY 3 cut(s) 164, 357, 632
PscI ACATGT 1 cut(s) 3627
PsiI TTATAA 1 cut(s) 1931
Psp5II RGGWCCY 3 cut(s) 164, 357, 632
PspEI GGTNACC 2 cut(s) 2243, 4578
PspFI CCCAGC 1 cut(s) 3189
PspLI CGTACG 1 cut(s) 1199
PspPPI RGGWCCY 3 cut(s) 164, 357, 632
PsrI GAACNNNNNNTAC 2 cut(s) 966, 998
PstI CTGCAG 2 cut(s) 814, 3436
PstNI CAGNNNCTG 2 cut(s) 995, 5717
PsuI RGATCY 6 cut(s) 129, 1636, 3451, 5367, 5632, 5714
PvuII CAGCTG 4 cut(s) 809, 1034, 2789, 4055
RsaI GTAC 9 cut(s) 49, 719, 944, 1183, 1201, 2133, 2213, 3324, 3765
RsaNI GTAC 9 cut(s) 48, 718, 943, 1182, 1200, 2132, 2212, 3323, 3764
RseI CAYNNNNRTG 3 cut(s) 2198, 2659, 4775
SalI GTCGAC 1 cut(s) 5573
SapI GCTCTTC 5 cut(s) 2943, 3034, 3444, 3782, 3966
ScaI AGTACT 1 cut(s) 2133
SchI GAGTC 9 cut(s) 30, 1445, 1715, 1773, 3292, 4238, 4851, 5180, 5852
SduI GDGCHC 9 cut(s) 728, 1061, 1341, 2090, 2160, 3637, 4165, 5620, 5796
SexAI ACCWGGT 1 cut(s) 5443
SfcI CTRYAG 5 cut(s) 121, 810, 3345, 3432, 4647
Sfr274I CTCGAG 2 cut(s) 2730, 6163
SfuI TTCGAA 3 cut(s) 1953, 3855, 5812
SinI GGWCC 9 cut(s) 164, 357, 632, 1330, 1501, 1597, 3420, 4310, 5846
SlaI CTCGAG 2 cut(s) 2730, 6163
SmiMI CAYNNNNRTG 3 cut(s) 2198, 2659, 4775
SnaBI TACGTA 1 cut(s) 1307
SphI GCATGC 6 cut(s) 464, 846, 2175, 2664, 4766, 5759
SspI AATATT 3 cut(s) 476, 835, 4916
TaqII GACCGA 1 cut(s) 2004
TatI WGTACW 2 cut(s) 1181, 2131
TauI GCSGC 7 cut(s) 109, 546, 2645, 2957, 3775, 4236, 4754
TseFI GTSAC 6 cut(s) 1980, 2103, 2243, 2404, 2409, 4501
Tsp45I GTSAC 6 cut(s) 1980, 2103, 2243, 2404, 2409, 4501
TspGWI ACGGA 6 cut(s) 1772, 3213, 3578, 4270, 4841, 5755
Vha464I CTTAAG 4 cut(s) 1535, 1802, 4735, 5290
VneI GTGCAC 1 cut(s) 4161
VpaK11BI GGWCC 9 cut(s) 164, 357, 632, 1330, 1501, 1597, 3420, 4310, 5846
XagI CCTNNNNNAGG 1 cut(s) 4975
XapI RAATTY 9 cut(s) 602, 1450, 1480, 1933, 1955, 3698, 4334, 5099, 6310
XbaI TCTAGA 3 cut(s) 1417, 1811, 2603
XceI RCATGY 9 cut(s) 464, 532, 846, 2175, 2664, 3631, 4766, 5759, 5906
XcmI CCANNNNNNNNNTGG 3 cut(s) 1851, 2493, 4304
XhoI CTCGAG 2 cut(s) 2730, 6163
XmaJI CCTAGG 2 cut(s) 946, 1517
XmiI GTMKAC 3 cut(s) 2430, 3108, 5574
XmnI GAANNNNTTC 5 cut(s) 1083, 3584, 3861, 5032, 6336
ZraI GACGTC 1 cut(s) 6254
ZrmI AGTACT 1 cut(s) 2133
Zsp2I ATGCAT 6 cut(s) 466, 2205, 2666, 4663, 4704, 6115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.