Ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55865 |
| fragaria_vesca | FvH4_1g28370 |
| prunus_persica | Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0496661 |
| rosa_laevigata | RLG00000022513 |
| rosa_multiflora | Rmu_sc0006111.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00388870 |
| rosa_rugosa | Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300 |
| rosa_samantha | Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500 |
| rosa_wichuraiana | Rw3G028920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 199 |
| AccI | GTMKAC | 1 cut(s) | 600 |
| AciI | CCGC | 2 cut(s) | 65, 581 |
| AclWI | GGATC | 1 cut(s) | 370 |
| AcsI | RAATTY | 1 cut(s) | 764 |
| AdeI | CACNNNGTG | 1 cut(s) | 199 |
| AfaI | GTAC | 1 cut(s) | 221 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 199 |
| AgsI | TTSAA | 2 cut(s) | 97, 562 |
| AjnI | CCWGG | 1 cut(s) | 228 |
| AluBI | AGCT | 3 cut(s) | 42, 266, 567 |
| AluI | AGCT | 3 cut(s) | 42, 266, 567 |
| Alw26I | GTCTC | 2 cut(s) | 29, 186 |
| AlwI | GGATC | 1 cut(s) | 370 |
| Ama87I | CYCGRG | 2 cut(s) | 107, 408 |
| AoxI | GGCC | 1 cut(s) | 411 |
| ApeKI | GCWGC | 2 cut(s) | 86, 641 |
| ApoI | RAATTY | 1 cut(s) | 764 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 712 |
| AspS9I | GGNCC | 2 cut(s) | 411, 479 |
| AsuHPI | GGTGA | 1 cut(s) | 742 |
| AvaI | CYCGRG | 2 cut(s) | 107, 408 |
| AvaII | GGWCC | 1 cut(s) | 479 |
| BbsI | GAAGAC | 1 cut(s) | 119 |
| BbvI | GCAGC | 2 cut(s) | 98, 628 |
| BccI | CCATC | 3 cut(s) | 160, 362, 731 |
| BceAI | ACGGC | 1 cut(s) | 502 |
| BciT130I | CCWGG | 1 cut(s) | 230 |
| BcoDI | GTCTC | 2 cut(s) | 29, 186 |
| BfaI | CTAG | 2 cut(s) | 39, 267 |
| BfmI | CTRYAG | 1 cut(s) | 597 |
| BglII | AGATCT | 1 cut(s) | 728 |
| BisI | GCNGC | 2 cut(s) | 87, 642 |
| BlsI | GCNGC | 2 cut(s) | 88, 643 |
| Bme1390I | CCNGG | 1 cut(s) | 230 |
| Bme18I | GGWCC | 1 cut(s) | 479 |
| BmeT110I | CYCGRG | 2 cut(s) | 107, 408 |
| BmgT120I | GGNCC | 2 cut(s) | 411, 479 |
| BmiI | GGNNCC | 1 cut(s) | 69 |
| BmrFI | CCNGG | 1 cut(s) | 230 |
| BmsI | GCATC | 1 cut(s) | 446 |
| BpiI | GAAGAC | 1 cut(s) | 119 |
| Bsa29I | ATCGAT | 1 cut(s) | 617 |
| BsaJI | CCNNGG | 2 cut(s) | 245, 379 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 199 |
| BseBI | CCWGG | 1 cut(s) | 230 |
| BseCI | ATCGAT | 1 cut(s) | 617 |
| BseDI | CCNNGG | 2 cut(s) | 245, 379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 199 |
| BseMII | CTCAG | 2 cut(s) | 24, 528 |
| BseXI | GCAGC | 2 cut(s) | 98, 628 |
| BshFI | GGCC | 1 cut(s) | 413 |
| BshVI | ATCGAT | 1 cut(s) | 617 |
| BsiHKCI | CYCGRG | 2 cut(s) | 107, 408 |
| BsiSI | CCGG | 1 cut(s) | 584 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 199 |
| BsmAI | GTCTC | 2 cut(s) | 29, 186 |
| BsmI | GAATGC | 1 cut(s) | 663 |
| BsnI | GGCC | 1 cut(s) | 413 |
| BsoBI | CYCGRG | 2 cut(s) | 107, 408 |
| Bsp143I | GATC | 3 cut(s) | 281, 375, 728 |
| BspACI | CCGC | 2 cut(s) | 65, 581 |
| BspANI | GGCC | 1 cut(s) | 413 |
| BspCNI | CTCAG | 2 cut(s) | 25, 529 |
| BspDI | ATCGAT | 1 cut(s) | 617 |
| BspLI | GGNNCC | 1 cut(s) | 69 |
| BspPI | GGATC | 1 cut(s) | 370 |
| BssECI | CCNNGG | 2 cut(s) | 245, 379 |
| BssMI | GATC | 3 cut(s) | 281, 375, 728 |
| BssT1I | CCWWGG | 2 cut(s) | 245, 379 |
| Bst2UI | CCWGG | 1 cut(s) | 230 |
| Bst4CI | ACNGT | 4 cut(s) | 25, 308, 341, 637 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 533 |
| BstC8I | GCNNGC | 1 cut(s) | 120 |
| BstDEI | CTNAG | 2 cut(s) | 33, 537 |
| BstKTI | GATC | 3 cut(s) | 284, 378, 731 |
| BstMAI | GTCTC | 2 cut(s) | 29, 186 |
| BstMBI | GATC | 3 cut(s) | 281, 375, 728 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 135, 533 |
| BstNI | CCWGG | 1 cut(s) | 230 |
| BstNSI | RCATGY | 1 cut(s) | 122 |
| BstSCI | CCNGG | 1 cut(s) | 228 |
| BstSFI | CTRYAG | 1 cut(s) | 597 |
| BstV1I | GCAGC | 2 cut(s) | 98, 628 |
| BstV2I | GAAGAC | 1 cut(s) | 119 |
| BstX2I | RGATCY | 1 cut(s) | 728 |
| BstYI | RGATCY | 1 cut(s) | 728 |
| Bsu15I | ATCGAT | 1 cut(s) | 617 |
| BsuRI | GGCC | 1 cut(s) | 413 |
| BsuTUI | ATCGAT | 1 cut(s) | 617 |
| BtsI | GCAGTG | 1 cut(s) | 366 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| Cac8I | GCNNGC | 1 cut(s) | 120 |
| Cfr13I | GGNCC | 2 cut(s) | 411, 479 |
| ClaI | ATCGAT | 1 cut(s) | 617 |
| CseI | GACGC | 1 cut(s) | 124 |
| Csp6I | GTAC | 1 cut(s) | 220 |
| CviAII | CATG | 4 cut(s) | 61, 119, 158, 257 |
| CviJI | RGCY | 7 cut(s) | 5, 42, 244, 266, 413, 567, 641 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 42, 244, 266, 413, 567, 641 |
| CviQI | GTAC | 1 cut(s) | 220 |
| DdeI | CTNAG | 2 cut(s) | 33, 537 |
| DpnI | GATC | 3 cut(s) | 283, 377, 730 |
| DpnII | GATC | 3 cut(s) | 281, 375, 728 |
| DraIII | CACNNNGTG | 1 cut(s) | 199 |
| Eco130I | CCWWGG | 2 cut(s) | 245, 379 |
| Eco32I | GATATC | 1 cut(s) | 79 |
| Eco47I | GGWCC | 1 cut(s) | 479 |
| Eco88I | CYCGRG | 2 cut(s) | 107, 408 |
| EcoRII | CCWGG | 1 cut(s) | 228 |
| EcoRV | GATATC | 1 cut(s) | 79 |
| EcoT14I | CCWWGG | 2 cut(s) | 245, 379 |
| ErhI | CCWWGG | 2 cut(s) | 245, 379 |
| FaeI | CATG | 4 cut(s) | 64, 122, 161, 260 |
| FaiI | YATR | 8 cut(s) | 62, 120, 159, 215, 258, 506, 675, 770 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 170, 202, 700, 732 |
| FatI | CATG | 4 cut(s) | 60, 118, 157, 256 |
| FblI | GTMKAC | 1 cut(s) | 600 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 642 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 642 |
| FspBI | CTAG | 2 cut(s) | 39, 267 |
| GluI | GCNGC | 2 cut(s) | 87, 642 |
| HaeIII | GGCC | 1 cut(s) | 413 |
| HapII | CCGG | 1 cut(s) | 584 |
| HgaI | GACGC | 1 cut(s) | 124 |
| Hin1II | CATG | 4 cut(s) | 64, 122, 161, 260 |
| HindIII | AAGCTT | 1 cut(s) | 565 |
| HinfI | GANTC | 8 cut(s) | 54, 203, 290, 363, 422, 602, 614, 670 |
| HpaII | CCGG | 1 cut(s) | 584 |
| HphI | GGTGA | 1 cut(s) | 742 |
| Hpy166II | GTNNAC | 1 cut(s) | 601 |
| Hpy188I | TCNGA | 8 cut(s) | 165, 346, 421, 493, 553, 607, 656, 707 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 97, 109, 426, 441 |
| Hpy8I | GTNNAC | 1 cut(s) | 601 |
| HpyAV | CCTTC | 1 cut(s) | 492 |
| HpyCH4III | ACNGT | 4 cut(s) | 25, 308, 341, 637 |
| HpyCH4V | TGCA | 9 cut(s) | 11, 122, 260, 371, 437, 644, 661, 720, 761 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 135, 533 |
| HpyF3I | CTNAG | 2 cut(s) | 33, 537 |
| Hsp92II | CATG | 4 cut(s) | 64, 122, 161, 260 |
| Kzo9I | GATC | 3 cut(s) | 281, 375, 728 |
| LpnPI | CCDG | 8 cut(s) | 59, 215, 242, 426, 439, 510, 597, 609 |
| Lsp1109I | GCAGC | 2 cut(s) | 98, 628 |
| LweI | GCATC | 1 cut(s) | 446 |
| MaeI | CTAG | 2 cut(s) | 39, 267 |
| MaeIII | GTNAC | 4 cut(s) | 19, 335, 364, 684 |
| MalI | GATC | 3 cut(s) | 283, 377, 730 |
| MboI | GATC | 3 cut(s) | 281, 375, 728 |
| MboII | GAAGA | 4 cut(s) | 26, 124, 217, 406 |
| MflI | RGATCY | 1 cut(s) | 728 |
| MluCI | AATT | 3 cut(s) | 676, 712, 764 |
| MlyI | GAGTC | 5 cut(s) | 212, 299, 372, 596, 664 |
| MnlI | CCTC | 4 cut(s) | 81, 459, 582, 763 |
| MroXI | GAANNNNTTC | 1 cut(s) | 712 |
| MseI | TTAA | 1 cut(s) | 171 |
| MslI | CAYNNNNRTG | 1 cut(s) | 656 |
| MspI | CCGG | 1 cut(s) | 584 |
| MspR9I | CCNGG | 1 cut(s) | 230 |
| Mva1269I | GAATGC | 1 cut(s) | 663 |
| MvaI | CCWGG | 1 cut(s) | 230 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 135, 533 |
| NdeII | GATC | 3 cut(s) | 281, 375, 728 |
| NlaIII | CATG | 4 cut(s) | 64, 122, 161, 260 |
| NlaIV | GGNNCC | 1 cut(s) | 69 |
| NmuCI | GTSAC | 3 cut(s) | 335, 364, 684 |
| NspI | RCATGY | 1 cut(s) | 122 |
| PaeI | GCATGC | 1 cut(s) | 122 |
| PaeR7I | CTCGAG | 1 cut(s) | 107 |
| PctI | GAATGC | 1 cut(s) | 663 |
| PdmI | GAANNNNTTC | 1 cut(s) | 712 |
| PfeI | GAWTC | 3 cut(s) | 54, 422, 614 |
| PflFI | GACNNNGTC | 1 cut(s) | 333 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 199 |
| PfoI | TCCNGGA | 1 cut(s) | 228 |
| PkrI | GCNGC | 2 cut(s) | 88, 643 |
| PleI | GAGTC | 5 cut(s) | 211, 298, 371, 596, 664 |
| PpsI | GAGTC | 5 cut(s) | 211, 298, 371, 596, 664 |
| Psp6I | CCWGG | 1 cut(s) | 228 |
| PspGI | CCWGG | 1 cut(s) | 228 |
| PspN4I | GGNNCC | 1 cut(s) | 69 |
| PspPI | GGNCC | 2 cut(s) | 411, 479 |
| PsuI | RGATCY | 1 cut(s) | 728 |
| PsyI | GACNNNGTC | 1 cut(s) | 333 |
| RsaI | GTAC | 1 cut(s) | 221 |
| RsaNI | GTAC | 1 cut(s) | 220 |
| RseI | CAYNNNNRTG | 1 cut(s) | 656 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 2 cut(s) | 87, 642 |
| Sau3AI | GATC | 3 cut(s) | 281, 375, 728 |
| Sau96I | GGNCC | 2 cut(s) | 411, 479 |
| SchI | GAGTC | 5 cut(s) | 212, 299, 372, 596, 664 |
| ScrFI | CCNGG | 1 cut(s) | 230 |
| SetI | ASST | 9 cut(s) | 44, 198, 221, 268, 385, 499, 569, 598, 755 |
| SfaNI | GCATC | 1 cut(s) | 446 |
| SfcI | CTRYAG | 1 cut(s) | 597 |
| Sfr274I | CTCGAG | 1 cut(s) | 107 |
| SinI | GGWCC | 1 cut(s) | 479 |
| SlaI | CTCGAG | 1 cut(s) | 107 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 656 |
| SmlI | CTYRAG | 1 cut(s) | 107 |
| SmoI | CTYRAG | 1 cut(s) | 107 |
| SphI | GCATGC | 1 cut(s) | 122 |
| Sse9I | AATT | 3 cut(s) | 676, 712, 764 |
| SsiI | CCGC | 2 cut(s) | 65, 581 |
| SspMI | CTAG | 2 cut(s) | 39, 267 |
| StyD4I | CCNGG | 1 cut(s) | 228 |
| StyI | CCWWGG | 2 cut(s) | 245, 379 |
| TaaI | ACNGT | 4 cut(s) | 25, 308, 341, 637 |
| TaqI | TCGA | 5 cut(s) | 52, 108, 134, 357, 617 |
| TasI | AATT | 3 cut(s) | 676, 712, 764 |
| TfiI | GAWTC | 3 cut(s) | 54, 422, 614 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TscAI | CASTG | 1 cut(s) | 373 |
| TseFI | GTSAC | 3 cut(s) | 335, 364, 684 |
| TseI | GCWGC | 2 cut(s) | 86, 641 |
| Tsp45I | GTSAC | 3 cut(s) | 335, 364, 684 |
| TspDTI | ATGAA | 3 cut(s) | 146, 557, 669 |
| TspRI | CASTG | 1 cut(s) | 373 |
| Tth111I | GACNNNGTC | 1 cut(s) | 333 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 199 |
| VpaK11BI | GGWCC | 1 cut(s) | 479 |
| XapI | RAATTY | 1 cut(s) | 764 |
| XceI | RCATGY | 1 cut(s) | 122 |
| XhoI | CTCGAG | 1 cut(s) | 107 |
| XmiI | GTMKAC | 1 cut(s) | 600 |
| XmnI | GAANNNNTTC | 1 cut(s) | 712 |
| XspI | CTAG | 2 cut(s) | 39, 267 |