Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Reverse (-)

2383982 .. 2385638

Gene Structure 1657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022513

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCTGCAACTCTGCAAGGAGTTTTCGTAGACACCAACTTGGGCACTCGCTTAGCCATCGATGTCTCTCGCGATATCACAGCAAGGGACTTCAAGAGGGAATTTGAGAGAGAGCACTTCAAATGTTTCTCGAAATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAAAATCATGCTTGTATCACCTGGCTGATTCAATGACTATAAAGAGCGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCAAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTATTTGGCCTCAAAAGTGGTTGATCATGTATCTCAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTAAGAGTATTACAAAAGGCAATTGTAAGAGCTGGAGGGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTGTCTACTTCACAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCATTGGTGTTGATGATACTGCAGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTCAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCTATATCAAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCCGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCCGAACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTTTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCGAGTAAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAGAAAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

9.46

Isoelectric Point (pI)

48.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	448
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	2 cut(s)	30, 483
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	765
AclWI	GGATC	2 cut(s)	139, 546
AcoI	YGGCCR	1 cut(s)	923
AcsI	RAATTY	4 cut(s)	101, 373, 438, 910
AcuI	CTGAAG	3 cut(s)	672, 771, 999
AcyI	GRCGYC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	232, 461, 983
AgsI	TTSAA	6 cut(s)	94, 121, 204, 748, 829, 1066
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	6 cut(s)	269, 423, 469, 650, 685, 1062
AluI	AGCT	6 cut(s)	269, 423, 469, 650, 685, 1062
Alw21I	GWGCWC	3 cut(s)	117, 389, 687
Alw26I	GTCTC	2 cut(s)	70, 1019
AlwI	GGATC	2 cut(s)	139, 546
Ama87I	CYCGRG	1 cut(s)	1016
AoxI	GGCC	4 cut(s)	287, 309, 923, 1002
ApeKI	GCWGC	2 cut(s)	5, 1059
ApoI	RAATTY	4 cut(s)	101, 373, 438, 910
AspS9I	GGNCC	1 cut(s)	885
AsuHPI	GGTGA	4 cut(s)	182, 779, 854, 927
AvaI	CYCGRG	1 cut(s)	1016
AvaII	GGWCC	1 cut(s)	885
BaeGI	GKGCMC	1 cut(s)	47
BaeI	ACNNNNGTAYC	2 cut(s)	564, 597
BanII	GRGCYC	1 cut(s)	687
BbsI	GAAGAC	1 cut(s)	836
Bbv12I	GWGCWC	3 cut(s)	117, 389, 687
BbvI	GCAGC	1 cut(s)	1071
BccI	CCATC	6 cut(s)	65, 157, 230, 755, 934, 940
BceAI	ACGGC	1 cut(s)	692
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	2 cut(s)	70, 1019
BfaI	CTAG	3 cut(s)	461, 630, 855
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	2 cut(s)	6, 1060
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	2 cut(s)	7, 1061
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	885
BmeT110I	CYCGRG	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	885
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	836
BplI	GAGNNNNNCTC	2 cut(s)	669, 701
BpmI	CTGGAG	1 cut(s)	445
Bpu1102I	GCTNAGC	1 cut(s)	52
BpuEI	CTTGAG	2 cut(s)	321, 865
Bsa29I	ATCGAT	1 cut(s)	60
BsaHI	GRCGYC	1 cut(s)	445
BsaJI	CCNNGG	1 cut(s)	920
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 461, 983
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	920
BseGI	GGATG	4 cut(s)	241, 355, 766, 1039
BseLI	CCNNNNNNNGG	3 cut(s)	232, 461, 983
BseMII	CTCAG	1 cut(s)	766
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	1071
BsgI	GTGCAG	2 cut(s)	141, 1078
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	4 cut(s)	289, 311, 925, 1004
BshVI	ATCGAT	1 cut(s)	60
BsiHKAI	GWGCWC	3 cut(s)	117, 389, 687
BsiHKCI	CYCGRG	1 cut(s)	1016
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	3 cut(s)	232, 461, 983
BsmAI	GTCTC	2 cut(s)	70, 1019
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	4 cut(s)	289, 311, 925, 1004
BsoBI	CYCGRG	1 cut(s)	1016
Bsp1286I	GDGCHC	4 cut(s)	47, 117, 389, 687
Bsp143I	GATC	3 cut(s)	144, 325, 538
Bsp1720I	GCTNAGC	1 cut(s)	52
Bsp68I	TCGCGA	1 cut(s)	72
BspACI	CCGC	1 cut(s)	765
BspANI	GGCC	4 cut(s)	289, 311, 925, 1004
BspCNI	CTCAG	1 cut(s)	765
BspDI	ATCGAT	1 cut(s)	60
BspFNI	CGCG	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	580
BspPI	GGATC	2 cut(s)	139, 546
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	1 cut(s)	920
BssMI	GATC	3 cut(s)	144, 325, 538
BssNI	GRCGYC	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	1 cut(s)	497
BstACI	GRCGYC	1 cut(s)	445
BstC8I	GCNNGC	2 cut(s)	528, 648
BstDEI	CTNAG	3 cut(s)	52, 393, 752
BstENI	CCTNNNNNAGG	1 cut(s)	459
BstF5I	GGATG	4 cut(s)	241, 355, 766, 1039
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	3 cut(s)	147, 328, 541
BstMAI	GTCTC	2 cut(s)	70, 1019
BstMBI	GATC	3 cut(s)	144, 325, 538
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	576
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	1071
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
Bsu15I	ATCGAT	1 cut(s)	60
BsuRI	GGCC	4 cut(s)	289, 311, 925, 1004
BsuTUI	ATCGAT	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	912
BtsCI	GGATG	4 cut(s)	241, 355, 766, 1039
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	4 cut(s)	158, 387, 687, 760
BtuMI	TCGCGA	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	528, 648
Cfr13I	GGNCC	1 cut(s)	885
ClaI	ATCGAT	1 cut(s)	60
CseI	GACGC	1 cut(s)	980
CviAII	CATG	7 cut(s)	180, 243, 254, 291, 329, 968, 1000
DdeI	CTNAG	3 cut(s)	52, 393, 752
DpnI	GATC	3 cut(s)	146, 327, 540
DpnII	GATC	3 cut(s)	144, 325, 538
EaeI	YGGCCR	1 cut(s)	923
Eam1104I	CTCTTC	1 cut(s)	497
EarI	CTCTTC	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	885
Eco53kI	GAGCTC	1 cut(s)	685
Eco57I	CTGAAG	3 cut(s)	672, 771, 999
Eco88I	CYCGRG	1 cut(s)	1016
EcoICRI	GAGCTC	1 cut(s)	685
EcoNI	CCTNNNNNAGG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	885
EcoRI	GAATTC	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	192
EcoRV	GATATC	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	687
FaeI	CATG	7 cut(s)	183, 246, 257, 294, 332, 971, 1003
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	179, 242, 253, 290, 328, 967, 999
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	30, 483
Fnu4HI	GCNGC	2 cut(s)	6, 1060
FokI	GGATG	4 cut(s)	248, 342, 773, 1026
FriOI	GRGCYC	1 cut(s)	687
Fsp4HI	GCNGC	2 cut(s)	6, 1060
FspBI	CTAG	3 cut(s)	461, 630, 855
GluI	GCNGC	2 cut(s)	6, 1060
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	4 cut(s)	289, 311, 925, 1004
HgaI	GACGC	1 cut(s)	980
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	7 cut(s)	183, 246, 257, 294, 332, 971, 1003
HincII	GTYRAC	1 cut(s)	449
HindII	GTYRAC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	200, 748
HphI	GGTGA	4 cut(s)	182, 779, 854, 927
Hpy166II	GTNNAC	3 cut(s)	31, 449, 484
Hpy188I	TCNGA	2 cut(s)	703, 1029
Hpy188III	TCNNGA	9 cut(s)	71, 94, 130, 138, 226, 368, 635, 798, 1018
Hpy8I	GTNNAC	3 cut(s)	31, 449, 484
Hpy99I	CGWCG	1 cut(s)	447
HpyAV	CCTTC	1 cut(s)	369
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	8 cut(s)	8, 16, 158, 257, 298, 578, 626, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	3 cut(s)	52, 393, 752
HpySE526I	ACGT	1 cut(s)	445
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	7 cut(s)	183, 246, 257, 294, 332, 971, 1003
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	3 cut(s)	144, 325, 538
Lsp1109I	GCAGC	1 cut(s)	1071
LweI	GCATC	1 cut(s)	635
MaeI	CTAG	3 cut(s)	461, 630, 855
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	4 cut(s)	691, 790, 865, 915
MalI	GATC	3 cut(s)	146, 327, 540
MboI	GATC	3 cut(s)	144, 325, 538
MboII	GAAGA	7 cut(s)	242, 514, 519, 665, 841, 966, 969
MfeI	CAATTG	1 cut(s)	412
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	4 cut(s)	47, 117, 389, 687
MluCI	AATT	5 cut(s)	101, 373, 412, 438, 910
MnlI	CCTC	9 cut(s)	90, 322, 420, 751, 883, 889, 898, 930, 1015
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	594
MspA1I	CMGCKG	1 cut(s)	650
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	144, 325, 538
NlaIII	CATG	7 cut(s)	183, 246, 257, 294, 332, 971, 1003
NmeAIII	GCCGAG	1 cut(s)	901
NmuCI	GTSAC	1 cut(s)	691
NruI	TCGCGA	1 cut(s)	72
PfeI	GAWTC	2 cut(s)	200, 748
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	7, 1061
PpuMI	RGGWCCY	1 cut(s)	885
Psp124BI	GAGCTC	1 cut(s)	687
Psp5II	RGGWCCY	1 cut(s)	885
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	885
PspPPI	RGGWCCY	1 cut(s)	885
PstI	CTGCAG	1 cut(s)	580
PsuI	RGATCY	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	650
RruI	TCGCGA	1 cut(s)	72
RseI	CAYNNNNRTG	1 cut(s)	594
SacI	GAGCTC	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	2 cut(s)	6, 1060
Sau3AI	GATC	3 cut(s)	144, 325, 538
Sau96I	GGNCC	1 cut(s)	885
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	4 cut(s)	47, 117, 389, 687
SfaNI	GCATC	1 cut(s)	635
SfcI	CTRYAG	1 cut(s)	576
SinI	GGWCC	1 cut(s)	885
SmiMI	CAYNNNNRTG	1 cut(s)	594
SmlI	CTYRAG	2 cut(s)	336, 880
SmoI	CTYRAG	2 cut(s)	336, 880
Sse9I	AATT	5 cut(s)	101, 373, 412, 438, 910
SsiI	CCGC	1 cut(s)	765
SspI	AATATT	1 cut(s)	517
SspMI	CTAG	3 cut(s)	461, 630, 855
SstI	GAGCTC	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	3 cut(s)	60, 131, 442
TasI	AATT	5 cut(s)	101, 373, 412, 438, 910
TfiI	GAWTC	2 cut(s)	200, 748
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	4 cut(s)	165, 394, 694, 760
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	2 cut(s)	5, 1059
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	4 cut(s)	242, 509, 687, 794
TspRI	CASTG	4 cut(s)	165, 394, 694, 760
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	885
XagI	CCTNNNNNAGG	1 cut(s)	459
XapI	RAATTY	4 cut(s)	101, 373, 438, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	30, 483
XspI	CTAG	3 cut(s)	461, 630, 855
ZraI	GACGTC	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.