Rorug03G0285300

ubiquitin protein ligase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006692
Physical Location & Seq
Forward (+)
28710658 .. 28713110
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0285300.1

Sequence Viewer

Length: 780 bp
ATGATGAAGAGGAAGAGCCTGGAGGAGGAAGACAAGGATTCCGAGGATCGGTGCTTCCACTGCTATGATGGTGAAGGTGTTATGATTTGCGAGGACGAGAGTTGCTTAAAAGTGTATCATCCAAGATGCGTAGGAAAACGGAAAAACTCCATGGACTCTGGAATGGGCTGGACTTGTAGAAGGCATTCTTGTGCATTGTGCTATGGTACCTCAACGTTTTATTGCCTTTGTTGTCCACATACATCATGTGAATATTGCCTAGGTAATGAAACTAGAGGAAAAGCGGACAGCAAACCAGAGAAAACAGACTTAGAGGATCAAGATGAACGGTGGCGATTCAAAGAATATTGGGAGATCGTAAAGGAAAAAGAAGGATTGACTTCAGAAGATGTTAATTCAGCAAAATCCATTTTAGAGAAGAGAAAAAATTGTTATATTGATGAGAGTGATGAAACAGTGAGCTCTGATACGACCATAACATCTGATGAAATGAAAGCGAGTCCTAGATTCGAAAAGAGCTGTTTTGCATCTATTATTCCTGAGAATATGAGGCTTGTTTACATAAAGAAGAGCTTACTGGAGAAATTACTGAAGGAGCCTGATCATTCGGAAAGCAAGTTACTAGGGAGTTTTGTGACAGTGAAAAATAACCCCCGGGACAGTATTCTGAGAAATGATTACCATACTCACCAATTTTCACAAGTTAAAGGCATAAAGGAAATCTCAGCAACCAATGGTGAGAGCAGTAAAATTCAACTGCAAGTTTCCAATTTTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

259

Amino Acids

29.85

Weight (kDa)

5.75

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD_NSD PF22908 16 - 62 1.6e-06 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 206
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 284
AclI AACGTT 1 cut(s) 215
AclWI GGATC 2 cut(s) 54, 324
AcsI RAATTY 1 cut(s) 750
AcuI CTGAAG 2 cut(s) 366, 611
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 25, 48
AgsI TTSAA 2 cut(s) 340, 755
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 3 cut(s) 462, 519, 573
AluI AGCT 3 cut(s) 462, 519, 573
Alw21I GWGCWC 1 cut(s) 464
AlwI GGATC 2 cut(s) 54, 324
Ama87I CYCGRG 1 cut(s) 654
ApoI RAATTY 1 cut(s) 750
Asp700I GAANNNNTTC 1 cut(s) 184
Asp718I GGTACC 1 cut(s) 206
AspA2I CCTAGG 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 655, 656
AsuHPI GGTGA 3 cut(s) 83, 680, 749
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 1 cut(s) 654
AvrII CCTAGG 1 cut(s) 259
BanI GGYRCC 1 cut(s) 206
BanII GRGCYC 1 cut(s) 464
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 464
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 20
BclI TGATCA 1 cut(s) 601
BcnI CCSGG 2 cut(s) 655, 656
BfaI CTAG 4 cut(s) 260, 273, 504, 623
BlnI CCTAGG 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 20, 655, 656
BmeT110I CYCGRG 1 cut(s) 654
BmiI GGNNCC 2 cut(s) 208, 597
BmrFI CCNGG 3 cut(s) 20, 655, 656
BmsI GCATC 2 cut(s) 116, 536
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 2 cut(s) 41, 599
Bpu14I TTCGAA 1 cut(s) 510
BpuMI CCSGG 2 cut(s) 655, 656
BsaJI CCNNGG 5 cut(s) 42, 150, 259, 653, 654
Bsc4I CCNNNNNNNGG 2 cut(s) 25, 48
Bse1I ACTGG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 5 cut(s) 42, 150, 259, 653, 654
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 2 cut(s) 25, 48
BseMII CTCAG 3 cut(s) 531, 659, 738
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 464
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 1 cut(s) 655
BslFI GGGAC 1 cut(s) 671
BslI CCNNNNNNNGG 2 cut(s) 25, 48
BsmFI GGGAC 1 cut(s) 671
BsmI GAATGC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 1 cut(s) 464
Bsp143I GATC 4 cut(s) 46, 316, 354, 601
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 1 cut(s) 284
BspCNI CTCAG 3 cut(s) 532, 660, 737
BspLI GGNNCC 2 cut(s) 208, 597
BspPI GGATC 2 cut(s) 54, 324
BspQI GCTCTTC 2 cut(s) 8, 563
BspT104I TTCGAA 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 582
BssECI CCNNGG 5 cut(s) 42, 150, 259, 653, 654
BssMI GATC 4 cut(s) 46, 316, 354, 601
BssT1I CCWWGG 2 cut(s) 150, 259
Bst2UI CCWGG 1 cut(s) 20
Bst4CI ACNGT 4 cut(s) 330, 457, 640, 662
Bst6I CTCTTC 4 cut(s) 2, 8, 413, 563
BstBI TTCGAA 1 cut(s) 510
BstDEI CTNAG 4 cut(s) 310, 540, 668, 724
BstDSI CCRYGG 1 cut(s) 150
BstENI CCTNNNNNAGG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 118
BstKTI GATC 4 cut(s) 49, 319, 357, 604
BstMBI GATC 4 cut(s) 46, 316, 354, 601
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 3 cut(s) 18, 653, 654
BstV2I GAAGAC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 118
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 3 cut(s) 58, 462, 645
Cfr9I CCCGGG 1 cut(s) 654
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 151, 246
CviJI RGCY 7 cut(s) 18, 168, 462, 519, 553, 573, 598
CviKI_1 RGCY 7 cut(s) 18, 168, 462, 519, 553, 573, 598
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 4 cut(s) 310, 540, 668, 724
DpnI GATC 4 cut(s) 48, 318, 356, 603
DpnII GATC 4 cut(s) 46, 316, 354, 601
Eam1104I CTCTTC 4 cut(s) 2, 8, 413, 563
EarI CTCTTC 4 cut(s) 2, 8, 413, 563
Ecl136II GAGCTC 1 cut(s) 462
Eco130I CCWWGG 2 cut(s) 150, 259
Eco24I GRGCYC 1 cut(s) 464
Eco53kI GAGCTC 1 cut(s) 462
Eco57I CTGAAG 2 cut(s) 366, 611
Eco88I CYCGRG 1 cut(s) 654
EcoICRI GAGCTC 1 cut(s) 462
EcoNI CCTNNNNNAGG 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 18
EcoT14I CCWWGG 2 cut(s) 150, 259
EcoT38I GRGCYC 1 cut(s) 464
ErhI CCWWGG 2 cut(s) 150, 259
FaeI CATG 2 cut(s) 154, 249
FalI AAGNNNNNCTT 4 cut(s) 172, 204, 557, 589
FaqI GGGAC 1 cut(s) 671
FatI CATG 2 cut(s) 150, 245
FbaI TGATCA 1 cut(s) 601
FokI GGATG 1 cut(s) 105
FriOI GRGCYC 1 cut(s) 464
FspBI CTAG 4 cut(s) 260, 273, 504, 623
GsuI CTGGAG 2 cut(s) 41, 599
HapII CCGG 1 cut(s) 655
Hin1II CATG 2 cut(s) 154, 249
HinfI GANTC 5 cut(s) 38, 155, 336, 499, 507
HpaII CCGG 1 cut(s) 655
HphI GGTGA 3 cut(s) 83, 680, 749
Hpy166II GTNNAC 2 cut(s) 236, 559
Hpy188I TCNGA 6 cut(s) 43, 385, 466, 484, 610, 669
Hpy188III TCNNGA 3 cut(s) 159, 320, 539
Hpy8I GTNNAC 2 cut(s) 236, 559
HpyAV CCTTC 4 cut(s) 68, 174, 365, 586
HpyCH4III ACNGT 4 cut(s) 330, 457, 640, 662
HpyCH4IV ACGT 1 cut(s) 215
HpyCH4V TGCA 3 cut(s) 194, 527, 760
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 4 cut(s) 310, 540, 668, 724
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 2 cut(s) 154, 249
KpnI GGTACC 1 cut(s) 210
Ksp22I TGATCA 1 cut(s) 601
Kzo9I GATC 4 cut(s) 46, 316, 354, 601
LguI GCTCTTC 2 cut(s) 8, 563
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 9 cut(s) 5, 32, 144, 154, 309, 552, 563, 612, 668
LweI GCATC 2 cut(s) 116, 536
MaeI CTAG 4 cut(s) 260, 273, 504, 623
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 618, 634
MalI GATC 4 cut(s) 48, 318, 356, 603
MboI GATC 4 cut(s) 46, 316, 354, 601
MboII GAAGA 6 cut(s) 19, 25, 41, 398, 430, 580
MhlI GDGCHC 1 cut(s) 464
MluCI AATT 6 cut(s) 394, 427, 584, 692, 750, 769
MlyI GAGTC 2 cut(s) 149, 508
MnlI CCTC 9 cut(s) 3, 16, 19, 37, 85, 220, 269, 307, 543
MroXI GAANNNNTTC 1 cut(s) 184
MseI TTAA 3 cut(s) 107, 393, 705
MslI CAYNNNNRTG 2 cut(s) 63, 189
MspI CCGG 1 cut(s) 655
MspR9I CCNGG 3 cut(s) 20, 655, 656
Mva1269I GAATGC 1 cut(s) 184
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 2 cut(s) 655, 656
NcoI CCATGG 1 cut(s) 150
NdeII GATC 4 cut(s) 46, 316, 354, 601
NlaIII CATG 2 cut(s) 154, 249
NlaIV GGNNCC 2 cut(s) 208, 597
NmuCI GTSAC 1 cut(s) 634
NspV TTCGAA 1 cut(s) 510
PciSI GCTCTTC 2 cut(s) 8, 563
PctI GAATGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 184
PfeI GAWTC 3 cut(s) 38, 336, 507
PleI GAGTC 2 cut(s) 149, 507
PpsI GAGTC 2 cut(s) 149, 507
Psp124BI GAGCTC 1 cut(s) 464
Psp1406I AACGTT 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 2 cut(s) 208, 597
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 2 cut(s) 63, 189
SacI GAGCTC 1 cut(s) 464
SapI GCTCTTC 2 cut(s) 8, 563
SaqAI TTAA 3 cut(s) 107, 393, 705
Sau3AI GATC 4 cut(s) 46, 316, 354, 601
SchI GAGTC 2 cut(s) 149, 508
ScrFI CCNGG 3 cut(s) 20, 655, 656
SduI GDGCHC 1 cut(s) 464
SetI ASST 7 cut(s) 79, 212, 218, 265, 464, 521, 575
SfaNI GCATC 2 cut(s) 116, 536
SfuI TTCGAA 1 cut(s) 510
SmaI CCCGGG 1 cut(s) 656
SmiMI CAYNNNNRTG 2 cut(s) 63, 189
Sse9I AATT 6 cut(s) 394, 427, 584, 692, 750, 769
SsiI CCGC 1 cut(s) 284
SspI AATATT 2 cut(s) 254, 347
SspMI CTAG 4 cut(s) 260, 273, 504, 623
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 3 cut(s) 18, 653, 654
StyI CCWWGG 2 cut(s) 150, 259
TaaI ACNGT 4 cut(s) 330, 457, 640, 662
TaiI ACGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 510
TasI AATT 6 cut(s) 394, 427, 584, 692, 750, 769
TfiI GAWTC 3 cut(s) 38, 336, 507
Tru1I TTAA 3 cut(s) 107, 393, 705
Tru9I TTAA 3 cut(s) 107, 393, 705
TscAI CASTG 3 cut(s) 65, 462, 645
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 6 cut(s) 20, 282, 339, 465, 501, 506
TspGWI ACGGA 1 cut(s) 154
TspMI CCCGGG 1 cut(s) 654
TspRI CASTG 3 cut(s) 65, 462, 645
XagI CCTNNNNNAGG 1 cut(s) 23
XapI RAATTY 1 cut(s) 750
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmaI CCCGGG 1 cut(s) 654
XmaJI CCTAGG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 184
XspI CTAG 4 cut(s) 260, 273, 504, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.