Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Forward (+)

47875795 .. 47878193

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45897

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCAATGGCTTCAACTCTGCAAGGAGTTTTCGTAGACACCAACTTGGGCACTCGGTTAGCCATCGATGTCTCTCGCGATATCACAGCAAGGGACTTCAAGAGGGAATTTGAGAGAGAGCACTTCAAATGTTTCTCCAAATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAAAATCATGCTTGTATCACCTGGCTGATTCAATGACTATAAAGAGTGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGTGAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTATTTGGCCTCAAATGTGGTTGATCATGTATTTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTAAGAGTATTACAAAAGGCAATTGTAAGAGGTGGAGAGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTTTCTACTTCGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCCATATTGAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCAGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCTCCAAACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCCAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAGTAAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAGAAAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

362

Amino Acids

40.29

Weight (kDa)

9.55

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	2 cut(s)	145, 552
AcoI	YGGCCR	1 cut(s)	929
AcsI	RAATTY	4 cut(s)	107, 379, 444, 916
AcuI	CTGAAG	3 cut(s)	678, 777, 1005
AcyI	GRCGYC	1 cut(s)	451
AfiI	CCNNNNNNNGG	4 cut(s)	238, 467, 678, 989
AgsI	TTSAA	8 cut(s)	15, 100, 127, 210, 344, 754, 835, 1072
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	5 cut(s)	275, 475, 656, 691, 1068
AluI	AGCT	5 cut(s)	275, 475, 656, 691, 1068
Alw21I	GWGCWC	3 cut(s)	123, 395, 693
Alw26I	GTCTC	2 cut(s)	76, 1025
AlwI	GGATC	2 cut(s)	145, 552
Ama87I	CYCGRG	1 cut(s)	1022
AoxI	GGCC	4 cut(s)	293, 315, 929, 1008
ApeKI	GCWGC	1 cut(s)	1065
ApoI	RAATTY	4 cut(s)	107, 379, 444, 916
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	891
AsuHPI	GGTGA	4 cut(s)	188, 785, 860, 933
AvaI	CYCGRG	1 cut(s)	1022
AvaII	GGWCC	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanII	GRGCYC	1 cut(s)	693
BbsI	GAAGAC	1 cut(s)	842
Bbv12I	GWGCWC	3 cut(s)	123, 395, 693
BbvI	GCAGC	1 cut(s)	1077
BccI	CCATC	6 cut(s)	71, 163, 236, 761, 940, 946
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	76, 1025
BfaI	CTAG	2 cut(s)	467, 636
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	1 cut(s)	1066
BlsI	GCNGC	1 cut(s)	1067
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	891
BmeT110I	CYCGRG	1 cut(s)	1022
BmgT120I	GGNCC	1 cut(s)	891
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	842
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
BpuEI	CTTGAG	1 cut(s)	871
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	926
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 467, 678, 989
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	926
BseGI	GGATG	4 cut(s)	247, 361, 772, 1045
BseLI	CCNNNNNNNGG	4 cut(s)	238, 467, 678, 989
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	772
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	1077
BsgI	GTGCAG	2 cut(s)	147, 1084
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	295, 317, 931, 1010
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	3 cut(s)	123, 395, 693
BsiHKCI	CYCGRG	1 cut(s)	1022
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	4 cut(s)	238, 467, 678, 989
BsmAI	GTCTC	2 cut(s)	76, 1025
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	295, 317, 931, 1010
BsoBI	CYCGRG	1 cut(s)	1022
Bsp1286I	GDGCHC	4 cut(s)	53, 123, 395, 693
Bsp143I	GATC	3 cut(s)	150, 331, 544
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	1 cut(s)	771
BspANI	GGCC	4 cut(s)	295, 317, 931, 1010
BspCNI	CTCAG	1 cut(s)	771
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	145, 552
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	926
BssMI	GATC	3 cut(s)	150, 331, 544
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	534, 654
BstDEI	CTNAG	2 cut(s)	399, 758
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	247, 361, 772, 1045
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	153, 334, 547
BstMAI	GTCTC	2 cut(s)	76, 1025
BstMBI	GATC	3 cut(s)	150, 331, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	1077
BstV2I	GAAGAC	1 cut(s)	842
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	295, 317, 931, 1010
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	918
BtsCI	GGATG	4 cut(s)	247, 361, 772, 1045
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	164, 393, 693, 766
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	534, 654
Cfr13I	GGNCC	1 cut(s)	891
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	986
CviAII	CATG	7 cut(s)	186, 249, 260, 297, 335, 974, 1006
DdeI	CTNAG	2 cut(s)	399, 758
DpnI	GATC	3 cut(s)	152, 333, 546
DpnII	GATC	3 cut(s)	150, 331, 544
EaeI	YGGCCR	1 cut(s)	929
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	691
Eco24I	GRGCYC	1 cut(s)	693
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	891
Eco53kI	GAGCTC	1 cut(s)	691
Eco57I	CTGAAG	3 cut(s)	678, 777, 1005
Eco88I	CYCGRG	1 cut(s)	1022
EcoICRI	GAGCTC	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	891
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	7 cut(s)	189, 252, 263, 300, 338, 977, 1009
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	7 cut(s)	185, 248, 259, 296, 334, 973, 1005
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	1066
FokI	GGATG	4 cut(s)	254, 348, 779, 1032
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	1 cut(s)	1066
FspBI	CTAG	2 cut(s)	467, 636
GluI	GCNGC	1 cut(s)	1066
HaeIII	GGCC	4 cut(s)	295, 317, 931, 1010
HgaI	GACGC	1 cut(s)	986
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	7 cut(s)	189, 252, 263, 300, 338, 977, 1009
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	206, 754
HphI	GGTGA	4 cut(s)	188, 785, 860, 933
Hpy166II	GTNNAC	2 cut(s)	37, 455
Hpy188I	TCNGA	1 cut(s)	709
Hpy188III	TCNNGA	7 cut(s)	77, 100, 144, 232, 374, 804, 1024
Hpy8I	GTNNAC	2 cut(s)	37, 455
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	338, 375
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	22, 164, 263, 304, 584, 632, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	399, 758
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	7 cut(s)	189, 252, 263, 300, 338, 977, 1009
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	150, 331, 544
Lsp1109I	GCAGC	1 cut(s)	1077
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	2 cut(s)	467, 636
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	4 cut(s)	697, 796, 871, 921
MalI	GATC	3 cut(s)	152, 333, 546
MboI	GATC	3 cut(s)	150, 331, 544
MboII	GAAGA	7 cut(s)	248, 520, 525, 671, 847, 972, 975
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	4 cut(s)	53, 123, 395, 693
MluCI	AATT	5 cut(s)	107, 379, 418, 444, 916
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	1 cut(s)	621
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	3 cut(s)	150, 331, 544
NlaIII	CATG	7 cut(s)	189, 252, 263, 300, 338, 977, 1009
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	1 cut(s)	697
NruI	TCGCGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	206, 754
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	1067
PpuMI	RGGWCCY	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	891
PspPPI	RGGWCCY	1 cut(s)	891
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	656
RruI	TCGCGA	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	693
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	1 cut(s)	1066
Sau3AI	GATC	3 cut(s)	150, 331, 544
Sau96I	GGNCC	1 cut(s)	891
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	4 cut(s)	53, 123, 395, 693
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	891
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
Sse9I	AATT	5 cut(s)	107, 379, 418, 444, 916
SsiI	CCGC	1 cut(s)	771
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	2 cut(s)	467, 636
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	2 cut(s)	66, 448
TasI	AATT	5 cut(s)	107, 379, 418, 444, 916
TfiI	GAWTC	2 cut(s)	206, 754
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	4 cut(s)	171, 400, 700, 766
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	1 cut(s)	1065
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	4 cut(s)	248, 515, 693, 800
TspRI	CASTG	4 cut(s)	171, 400, 700, 766
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	891
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	4 cut(s)	107, 379, 444, 916
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	467, 636
ZraI	GACGTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.