Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Forward (+)

45919550 .. 45921800

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG366400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGACTATAAAGAGCGTTTTCCTGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCGAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTACTTGGCCTCAAAAGTGGCTGATCATGTATCTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTAAGAGTATTACAAAAGGCAATTGTAAGAGGTGGAGAGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTTTCTACTTCGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCCACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCGACACACATTGATGAGGACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCCATATCGAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCAGTGGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCCGAACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAGTAAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAGAAAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

35.9

Weight (kDa)

9.12

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	244
AciI	CCGC	1 cut(s)	666
AclWI	GGATC	2 cut(s)	342, 447
AcoI	YGGCCR	1 cut(s)	824
AcsI	RAATTY	3 cut(s)	169, 234, 811
AcuI	CTGAAG	4 cut(s)	153, 573, 672, 900
AcyI	GRCGYC	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	28, 257, 573, 884
AgsI	TTSAA	3 cut(s)	649, 730, 967
AluBI	AGCT	5 cut(s)	65, 265, 551, 586, 963
AluI	AGCT	5 cut(s)	65, 265, 551, 586, 963
Alw21I	GWGCWC	2 cut(s)	185, 588
Alw26I	GTCTC	1 cut(s)	920
AlwI	GGATC	2 cut(s)	342, 447
Ama87I	CYCGRG	1 cut(s)	917
AoxI	GGCC	4 cut(s)	83, 105, 824, 903
ApeKI	GCWGC	1 cut(s)	960
ApoI	RAATTY	3 cut(s)	169, 234, 811
Asp700I	GAANNNNTTC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	786
AsuHPI	GGTGA	3 cut(s)	680, 755, 828
AvaI	CYCGRG	1 cut(s)	917
AvaII	GGWCC	1 cut(s)	786
BaeI	ACNNNNGTAYC	4 cut(s)	360, 393, 465, 498
BanII	GRGCYC	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	737
Bbv12I	GWGCWC	2 cut(s)	185, 588
BbvI	GCAGC	1 cut(s)	972
BccI	CCATC	4 cut(s)	26, 656, 835, 841
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	920
BfaI	CTAG	4 cut(s)	257, 426, 531, 756
BfmI	CTRYAG	2 cut(s)	372, 477
BisI	GCNGC	1 cut(s)	961
BlsI	GCNGC	1 cut(s)	962
Bme18I	GGWCC	1 cut(s)	786
BmeT110I	CYCGRG	1 cut(s)	917
BmgT120I	GGNCC	1 cut(s)	786
BmsI	GCATC	2 cut(s)	431, 536
BpiI	GAAGAC	1 cut(s)	737
BplI	GAGNNNNNCTC	2 cut(s)	570, 602
BpuEI	CTTGAG	1 cut(s)	766
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	821
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 257, 573, 884
Bse1I	ACTGG	2 cut(s)	346, 451
BseDI	CCNNGG	1 cut(s)	821
BseGI	GGATG	4 cut(s)	37, 151, 667, 940
BseLI	CCNNNNNNNGG	4 cut(s)	28, 257, 573, 884
BseMII	CTCAG	1 cut(s)	667
BseNI	ACTGG	2 cut(s)	346, 451
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	1 cut(s)	972
BsgI	GTGCAG	1 cut(s)	979
BshFI	GGCC	4 cut(s)	85, 107, 826, 905
BsiHKAI	GWGCWC	2 cut(s)	185, 588
BsiHKCI	CYCGRG	1 cut(s)	917
BslI	CCNNNNNNNGG	4 cut(s)	28, 257, 573, 884
BsmAI	GTCTC	1 cut(s)	920
BsnI	GGCC	4 cut(s)	85, 107, 826, 905
BsoBI	CYCGRG	1 cut(s)	917
Bsp1286I	GDGCHC	2 cut(s)	185, 588
Bsp143I	GATC	3 cut(s)	121, 334, 439
BspACI	CCGC	1 cut(s)	666
BspANI	GGCC	4 cut(s)	85, 107, 826, 905
BspCNI	CTCAG	1 cut(s)	666
BspMAI	CTGCAG	2 cut(s)	376, 481
BspPI	GGATC	2 cut(s)	342, 447
BsrI	ACTGG	2 cut(s)	346, 451
BssECI	CCNNGG	1 cut(s)	821
BssMI	GATC	3 cut(s)	121, 334, 439
BssNI	GRCGYC	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	324, 549
BstDEI	CTNAG	2 cut(s)	189, 653
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	4 cut(s)	37, 151, 667, 940
BstKTI	GATC	3 cut(s)	124, 337, 442
BstMAI	GTCTC	1 cut(s)	920
BstMBI	GATC	3 cut(s)	121, 334, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSFI	CTRYAG	2 cut(s)	372, 477
BstV1I	GCAGC	1 cut(s)	972
BstV2I	GAAGAC	1 cut(s)	737
BsuRI	GGCC	4 cut(s)	85, 107, 826, 905
BtgZI	GCGATG	1 cut(s)	813
BtsCI	GGATG	4 cut(s)	37, 151, 667, 940
BtsI	GCAGTG	2 cut(s)	183, 615
BtsIMutI	CAGTG	4 cut(s)	183, 588, 615, 661
Cac8I	GCNNGC	2 cut(s)	324, 549
Cfr13I	GGNCC	1 cut(s)	786
CseI	GACGC	1 cut(s)	881
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	6 cut(s)	39, 50, 87, 125, 869, 901
DdeI	CTNAG	2 cut(s)	189, 653
DpnI	GATC	3 cut(s)	123, 336, 441
DpnII	GATC	3 cut(s)	121, 334, 439
EaeI	YGGCCR	1 cut(s)	824
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	586
Eco24I	GRGCYC	1 cut(s)	588
Eco47I	GGWCC	1 cut(s)	786
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	4 cut(s)	153, 573, 672, 900
Eco88I	CYCGRG	1 cut(s)	917
EcoICRI	GAGCTC	1 cut(s)	586
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	786
EcoRI	GAATTC	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	588
FaeI	CATG	6 cut(s)	42, 53, 90, 128, 872, 904
FatI	CATG	6 cut(s)	38, 49, 86, 124, 868, 900
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	961
FokI	GGATG	4 cut(s)	44, 138, 674, 927
FriOI	GRGCYC	1 cut(s)	588
Fsp4HI	GCNGC	1 cut(s)	961
FspBI	CTAG	4 cut(s)	257, 426, 531, 756
GluI	GCNGC	1 cut(s)	961
HaeIII	GGCC	4 cut(s)	85, 107, 826, 905
HgaI	GACGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	6 cut(s)	42, 53, 90, 128, 872, 904
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	649
HphI	GGTGA	3 cut(s)	680, 755, 828
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	133, 486, 604
Hpy188III	TCNNGA	4 cut(s)	22, 164, 699, 919
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	128, 165
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	7 cut(s)	53, 94, 374, 422, 479, 527, 960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	189, 653
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	6 cut(s)	42, 53, 90, 128, 872, 904
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	3 cut(s)	121, 334, 439
LpnPI	CCDG	9 cut(s)	35, 177, 327, 336, 432, 561, 609, 891, 957
Lsp1109I	GCAGC	1 cut(s)	972
LweI	GCATC	2 cut(s)	431, 536
MaeI	CTAG	4 cut(s)	257, 426, 531, 756
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	4 cut(s)	592, 691, 766, 816
MalI	GATC	3 cut(s)	123, 336, 441
MboI	GATC	3 cut(s)	121, 334, 439
MboII	GAAGA	7 cut(s)	38, 310, 315, 566, 742, 867, 870
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	185, 588
MluCI	AATT	4 cut(s)	169, 208, 234, 811
MmeI	TCCRAC	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	2 cut(s)	411, 516
MslI	CAYNNNNRTG	2 cut(s)	390, 495
MspA1I	CMGCKG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	3 cut(s)	121, 334, 439
NlaIII	CATG	6 cut(s)	42, 53, 90, 128, 872, 904
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	649
PkrI	GCNGC	1 cut(s)	962
PpuMI	RGGWCCY	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	786
PspPI	GGNCC	1 cut(s)	786
PspPPI	RGGWCCY	1 cut(s)	786
PstI	CTGCAG	2 cut(s)	376, 481
PvuII	CAGCTG	1 cut(s)	551
RseI	CAYNNNNRTG	2 cut(s)	390, 495
SacI	GAGCTC	1 cut(s)	588
SaqAI	TTAA	2 cut(s)	411, 516
SatI	GCNGC	1 cut(s)	961
Sau3AI	GATC	3 cut(s)	121, 334, 439
Sau96I	GGNCC	1 cut(s)	786
SduI	GDGCHC	2 cut(s)	185, 588
SfaNI	GCATC	2 cut(s)	431, 536
SfcI	CTRYAG	2 cut(s)	372, 477
SinI	GGWCC	1 cut(s)	786
SmiMI	CAYNNNNRTG	2 cut(s)	390, 495
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
Sse9I	AATT	4 cut(s)	169, 208, 234, 811
SsiI	CCGC	1 cut(s)	666
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	4 cut(s)	257, 426, 531, 756
SstI	GAGCTC	1 cut(s)	588
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	238, 572
TasI	AATT	4 cut(s)	169, 208, 234, 811
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	2 cut(s)	411, 516
Tru9I	TTAA	2 cut(s)	411, 516
TscAI	CASTG	4 cut(s)	190, 595, 615, 661
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	960
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	38, 305, 588, 695
TspRI	CASTG	4 cut(s)	190, 595, 615, 661
VpaK11BI	GGWCC	1 cut(s)	786
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	3 cut(s)	169, 234, 811
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	4 cut(s)	257, 426, 531, 756
ZraI	GACGTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.