Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Reverse (-)

20266820 .. 20268843

Gene Structure 2024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCAAGGAGTTTTCGTAGAGACCAACATGGGCACTCGCTTAGCCGTCGATGTCCCTCGCGATATCACAGTAAGGGACTTCATGAGGGAATTTGAGAGAGAGCACTTTGAATCTTTTCCGACATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAGAACCATTCTTGTATCGTCTGTCTGACTCTATGAGTTTAAAGAGTGTTTTCCAGAAAGAGGAAGTAGATTGGTTTCTTCATGCAGAAGCAAGAGCATTGACTGATTGTAATCGGAAGGTAGTGAAGCAAGAGCAAGAGCAAGGTTTGCATGACTGTGTGGCCTCAAAAGTGGTTGATCATGTGTCTGAAGGTAGTGATACATCTCATCCTTCTAATCCTGAAAATTTTGCAGTGAAGCAAGAGCAACAGCAATGTTTGCATGACTGTGTGGCCTCAAAAGTGGTTGATCATGTATCTGAAGGTAGTGATATATCTCATCCTTCTAACCCTGAAAATTTTGTTACAACCACTAAGATTATTACAAAAGGCAATTGTAAGAGGTGGAGGAGAAAAAGGGGAAAAAGATTTCGACAACAACTTTTACCTGGAAAGCTTGGGAAACTTTTTTTCTTCACAAAGAAGAGGAAGAGAAAAAAGAACGTTTCTTTGCCAGCAAAAGTGGATCAAACTGGAATGGAAATCATTACTGTAGATGATACTGGAGTTCCTATGCACATTGATGAGAACAAGACTGTTCTTGATGATTGTGCATCTGGTCAAGAAATTGAGCCAGCTGAAGAGCACTTGGCTTCTATATCATGGAGAGATGGGCTCACTGAGACTTCATCAGAAGCAGTAGTATCTGTATCTGGTATCATCAATAAGTACTTTTTGAATCTCAGTGAAGATGGTGGAGATGCAAGTCCTACGAATTCAGTTACATCAAGAGTTCATAGTTCCCCCAGACAGCACTTGAAGACTAAAGAAGGTCATATTTGTTCCATCCCACAAGTTACTCCCTCCACCTCGATCAAGTTTTCTGCAAAAAAATTGTTACCTCTCCCATCATCATCACCAACTGACTTTGGTGGAAGAAGATACAAACATGATAAACCTGAAGTTGGGGAGCGTCTTGTCATGGCCTCGTATAGTCTTGGGATTTCTCCAAGTAACAAACATCCTGCTGTACGTTTTGTGCAGCTTCAAACAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

44.67

Weight (kDa)

8.1

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	60
AclI	AACGTT	1 cut(s)	642
AclWI	GGATC	2 cut(s)	127, 672
AcsI	RAATTY	4 cut(s)	89, 385, 496, 913
AcuI	CTGAAG	4 cut(s)	369, 480, 798, 1119
AfaI	GTAC	2 cut(s)	869, 1170
AfiI	CCNNNNNNNGG	3 cut(s)	125, 220, 1103
AgsI	TTSAA	4 cut(s)	110, 877, 958, 1187
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	3 cut(s)	595, 776, 1183
AluI	AGCT	3 cut(s)	595, 776, 1183
Alw21I	GWGCWC	2 cut(s)	105, 786
Alw26I	GTCTC	2 cut(s)	14, 815
AlwI	GGATC	2 cut(s)	127, 672
AoxI	GGCC	3 cut(s)	321, 432, 1122
ApeKI	GCWGC	1 cut(s)	1180
ApoI	RAATTY	4 cut(s)	89, 385, 496, 913
Asp700I	GAANNNNTTC	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	1047
BaeGI	GKGCMC	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	965
Bbv12I	GWGCWC	2 cut(s)	105, 786
BbvI	GCAGC	1 cut(s)	1192
BccI	CCATC	5 cut(s)	145, 803, 884, 992, 1054
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	588
BclI	TGATCA	2 cut(s)	337, 448
BcoDI	GTCTC	2 cut(s)	14, 815
BfmI	CTRYAG	1 cut(s)	690
BisI	GCNGC	1 cut(s)	1181
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	1182
BmcAI	AGTACT	1 cut(s)	869
Bme1390I	CCNGG	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	588
BmsI	GCATC	2 cut(s)	761, 889
BpiI	GAAGAC	1 cut(s)	965
BplI	GAGNNNNNCTC	2 cut(s)	798, 830
BpmI	CTGGAG	1 cut(s)	723
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	14
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 220, 1103
Bse1I	ACTGG	2 cut(s)	676, 706
Bse3DI	GCAATG	1 cut(s)	419
Bse8I	GATNNNNATC	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	588
BseGI	GGATG	4 cut(s)	367, 478, 984, 1159
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	3 cut(s)	125, 220, 1103
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	2 cut(s)	810, 895
BseNI	ACTGG	2 cut(s)	676, 706
BseRI	GAGGAG	1 cut(s)	562
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	1192
BsgI	GTGCAG	1 cut(s)	129
Bsh1236I	CGCG	1 cut(s)	60
BshFI	GGCC	3 cut(s)	323, 434, 1124
BsiHKAI	GWGCWC	2 cut(s)	105, 786
BslFI	GGGAC	2 cut(s)	38, 89
BslI	CCNNNNNNNGG	3 cut(s)	125, 220, 1103
BsmAI	GTCTC	2 cut(s)	14, 815
BsmFI	GGGAC	2 cut(s)	38, 89
BsnI	GGCC	3 cut(s)	323, 434, 1124
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	4 cut(s)	35, 105, 786, 816
Bsp143I	GATC	5 cut(s)	132, 337, 448, 664, 1011
Bsp1720I	GCTNAGC	1 cut(s)	40
Bsp68I	TCGCGA	1 cut(s)	60
BspANI	GGCC	3 cut(s)	323, 434, 1124
BspCNI	CTCAG	2 cut(s)	811, 894
BspFNI	CGCG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	81
BspPI	GGATC	2 cut(s)	127, 672
BspQI	GCTCTTC	1 cut(s)	774
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	676, 706
BssMI	GATC	5 cut(s)	132, 337, 448, 664, 1011
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	5 cut(s)	70, 317, 428, 691, 736
Bst6I	CTCTTC	3 cut(s)	617, 623, 774
BstAPI	GCANNNNNTGC	2 cut(s)	307, 418
BstC8I	GCNNGC	2 cut(s)	654, 774
BstDEI	CTNAG	4 cut(s)	40, 513, 819, 881
BstF5I	GGATG	4 cut(s)	367, 478, 984, 1159
BstFNI	CGCG	1 cut(s)	60
BstKTI	GATC	5 cut(s)	135, 340, 451, 667, 1014
BstMAI	GTCTC	2 cut(s)	14, 815
BstMBI	GATC	5 cut(s)	132, 337, 448, 664, 1011
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 418
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	1 cut(s)	586
BstSFI	CTRYAG	1 cut(s)	690
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	1192
BstV2I	GAAGAC	1 cut(s)	965
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	323, 434, 1124
BtsCI	GGATG	4 cut(s)	367, 478, 984, 1159
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	4 cut(s)	146, 399, 816, 889
BtuMI	TCGCGA	1 cut(s)	60
Cac8I	GCNNGC	2 cut(s)	654, 774
CciI	TCATGA	1 cut(s)	81
CseI	GACGC	1 cut(s)	1100
Csp6I	GTAC	2 cut(s)	868, 1169
CviQI	GTAC	2 cut(s)	868, 1169
DdeI	CTNAG	4 cut(s)	40, 513, 819, 881
DpnI	GATC	5 cut(s)	134, 339, 450, 666, 1013
DpnII	GATC	5 cut(s)	132, 337, 448, 664, 1011
DraI	TTTAAA	1 cut(s)	201
Eam1104I	CTCTTC	3 cut(s)	617, 623, 774
EarI	CTCTTC	3 cut(s)	617, 623, 774
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	14
Eco32I	GATATC	1 cut(s)	64
Eco57I	CTGAAG	4 cut(s)	369, 480, 798, 1119
EcoRI	GAATTC	1 cut(s)	913
EcoRII	CCWGG	1 cut(s)	586
EcoRV	GATATC	1 cut(s)	64
EcoT38I	GRGCYC	1 cut(s)	816
FaqI	GGGAC	2 cut(s)	38, 89
FbaI	TGATCA	2 cut(s)	337, 448
Fnu4HI	GCNGC	1 cut(s)	1181
FokI	GGATG	4 cut(s)	354, 465, 971, 1146
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	1 cut(s)	1181
GluI	GCNGC	1 cut(s)	1181
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	3 cut(s)	323, 434, 1124
HgaI	GACGC	1 cut(s)	1100
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	3 cut(s)	110, 188, 877
HphI	GGTGA	1 cut(s)	1047
Hpy188I	TCNGA	6 cut(s)	120, 187, 276, 349, 460, 832
Hpy188III	TCNNGA	8 cut(s)	59, 82, 126, 214, 380, 740, 761, 927
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	6 cut(s)	271, 344, 381, 455, 492, 962
HpyCH4III	ACNGT	5 cut(s)	70, 317, 428, 691, 736
HpyCH4IV	ACGT	2 cut(s)	642, 1171
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 418
HpyF3I	CTNAG	4 cut(s)	40, 513, 819, 881
HpySE526I	ACGT	2 cut(s)	642, 1171
Ksp22I	TGATCA	2 cut(s)	337, 448
Kzo9I	GATC	5 cut(s)	132, 337, 448, 664, 1011
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	1108
Lsp1109I	GCAGC	1 cut(s)	1192
LweI	GCATC	2 cut(s)	761, 889
MaeII	ACGT	2 cut(s)	642, 1171
MaeIII	GTNAC	5 cut(s)	502, 919, 994, 1035, 1151
MalI	GATC	5 cut(s)	134, 339, 450, 666, 1013
MboI	GATC	5 cut(s)	132, 337, 448, 664, 1011
MboII	GAAGA	9 cut(s)	230, 604, 634, 640, 791, 899, 970, 1086, 1089
MfeI	CAATTG	1 cut(s)	532
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	4 cut(s)	35, 105, 786, 816
MluCI	AATT	7 cut(s)	89, 385, 496, 532, 765, 913, 1031
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	143
MroXI	GAANNNNTTC	1 cut(s)	114
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	3 cut(s)	315, 426, 720
MspA1I	CMGCKG	1 cut(s)	776
MspR9I	CCNGG	1 cut(s)	588
MunI	CAATTG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	60
MwoI	GCNNNNNNNGC	2 cut(s)	307, 418
NdeII	GATC	5 cut(s)	132, 337, 448, 664, 1011
NruI	TCGCGA	1 cut(s)	60
PagI	TCATGA	1 cut(s)	81
PciSI	GCTCTTC	1 cut(s)	774
PdmI	GAANNNNTTC	1 cut(s)	114
PfeI	GAWTC	2 cut(s)	110, 877
PkrI	GCNGC	1 cut(s)	1182
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp1406I	AACGTT	1 cut(s)	642
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	776
RruI	TCGCGA	1 cut(s)	60
RsaI	GTAC	2 cut(s)	869, 1170
RsaNI	GTAC	2 cut(s)	868, 1169
RseI	CAYNNNNRTG	3 cut(s)	315, 426, 720
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	1 cut(s)	1181
Sau3AI	GATC	5 cut(s)	132, 337, 448, 664, 1011
ScaI	AGTACT	1 cut(s)	869
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	588
SduI	GDGCHC	4 cut(s)	35, 105, 786, 816
SfaNI	GCATC	2 cut(s)	761, 889
SfcI	CTRYAG	1 cut(s)	690
SmiMI	CAYNNNNRTG	3 cut(s)	315, 426, 720
Sse9I	AATT	7 cut(s)	89, 385, 496, 532, 765, 913, 1031
StyD4I	CCNGG	1 cut(s)	586
TaaI	ACNGT	5 cut(s)	70, 317, 428, 691, 736
TaiI	ACGT	2 cut(s)	645, 1174
TaqI	TCGA	3 cut(s)	48, 571, 1010
TasI	AATT	7 cut(s)	89, 385, 496, 532, 765, 913, 1031
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	2 cut(s)	110, 877
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	4 cut(s)	153, 399, 823, 889
TseI	GCWGC	1 cut(s)	1180
TspDTI	ATGAA	4 cut(s)	70, 230, 816, 923
TspRI	CASTG	4 cut(s)	153, 399, 823, 889
XapI	RAATTY	4 cut(s)	89, 385, 496, 913
XmnI	GAANNNNTTC	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	869

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.