Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Forward (+)

45421326 .. 45424026

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG363100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCAATGGCTTCAACTCTGCAAGGAGTTTTCGTAGACACCAACTTGGGCACTCGCTTAGCCATCGATGTCTCTCGCGATATCACAGCAAGGGACTTCAAGAGGGAATTTGAGAGAGAGCACTTCAAATGTTTCTCCAAATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAAAATCATGCTTGTATCACCTGGCTGATTCAATGACTATAAAGAGCGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCGAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTACTTGGCCTCAAAAGTGGCTGATCATGTATCTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTAAGAGTATTACAAAAGGCAATTGTAAGAGGTGGAGAGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTTTCTACTTCGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCCACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCTACACACATTGATGAGGACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCCATATCGAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCAGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCCGAACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAAGAAAAACAATCTTAATGTTGAGCCAAGTAGCGAGTTGTTCTTCAATTTCTATTATGTTGTGCTTGATGTTTCCATGCCTGTGGTCTTTGCATATGGGTGTCTACCCTTAAACAATAAGATCAGAGTCAAAAGAAAACGATTTCAGTTGACGGCGGCTGTACGAGCACAGCAGCGTGGCTCAGTGGTGCTCTTAGAAGGTGGCAAAGGAATGGCAGGTTACAGCTCGCAAAGCTTAATCGAGGAACATGGACTAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

466

Amino Acids

51.53

Weight (kDa)

9.15

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	1346
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	2 cut(s)	36, 1243
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	876, 1295
AclWI	GGATC	3 cut(s)	145, 552, 657
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	4 cut(s)	107, 379, 444, 1021
AcuI	CTGAAG	4 cut(s)	363, 783, 882, 1110
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	1 cut(s)	1302
AfiI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
AgsI	TTSAA	7 cut(s)	15, 100, 127, 210, 859, 940, 1186
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	6 cut(s)	275, 475, 761, 796, 1365, 1374
AluI	AGCT	6 cut(s)	275, 475, 761, 796, 1365, 1374
Alw21I	GWGCWC	5 cut(s)	123, 395, 798, 1309, 1332
Alw26I	GTCTC	2 cut(s)	76, 1130
AlwI	GGATC	3 cut(s)	145, 552, 657
Ama87I	CYCGRG	1 cut(s)	1127
AoxI	GGCC	4 cut(s)	293, 315, 1034, 1113
ApeKI	GCWGC	1 cut(s)	1312
ApoI	RAATTY	4 cut(s)	107, 379, 444, 1021
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	996
AsuHPI	GGTGA	4 cut(s)	188, 890, 965, 1038
AvaI	CYCGRG	1 cut(s)	1127
AvaII	GGWCC	1 cut(s)	996
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	4 cut(s)	570, 603, 675, 708
BanII	GRGCYC	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	947
Bbv12I	GWGCWC	5 cut(s)	123, 395, 798, 1309, 1332
BbvI	GCAGC	1 cut(s)	1324
BccI	CCATC	6 cut(s)	71, 163, 236, 866, 1045, 1051
BceAI	ACGGC	1 cut(s)	1308
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	76, 1130
BfaI	CTAG	4 cut(s)	467, 636, 741, 966
BfmI	CTRYAG	2 cut(s)	582, 687
BfuAI	ACCTGC	1 cut(s)	1346
BisI	GCNGC	2 cut(s)	1296, 1313
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	2 cut(s)	1297, 1314
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	996
BmeT110I	CYCGRG	1 cut(s)	1127
BmgT120I	GGNCC	1 cut(s)	996
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	641, 746
BpiI	GAAGAC	1 cut(s)	947
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	976
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
Bse1I	ACTGG	2 cut(s)	556, 661
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	1031
BseGI	GGATG	3 cut(s)	247, 361, 877
BseLI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	877, 1335
BseNI	ACTGG	2 cut(s)	556, 661
BseRI	GAGGAG	1 cut(s)	799
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	1324
BsgI	GTGCAG	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	295, 317, 1036, 1115
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	5 cut(s)	123, 395, 798, 1309, 1332
BsiHKCI	CYCGRG	1 cut(s)	1127
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
BsmAI	GTCTC	2 cut(s)	76, 1130
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	295, 317, 1036, 1115
BsoBI	CYCGRG	1 cut(s)	1127
Bsp1286I	GDGCHC	6 cut(s)	53, 123, 395, 798, 1309, 1332
Bsp143I	GATC	5 cut(s)	150, 331, 544, 649, 1260
Bsp1720I	GCTNAGC	1 cut(s)	58
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	2 cut(s)	876, 1295
BspANI	GGCC	4 cut(s)	295, 317, 1036, 1115
BspCNI	CTCAG	2 cut(s)	876, 1334
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	78
BspMAI	CTGCAG	2 cut(s)	586, 691
BspMI	ACCTGC	1 cut(s)	1346
BspPI	GGATC	3 cut(s)	145, 552, 657
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	556, 661
BssECI	CCNNGG	1 cut(s)	1031
BssMI	GATC	5 cut(s)	150, 331, 544, 649, 1260
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	3 cut(s)	534, 759, 1367
BstDEI	CTNAG	5 cut(s)	58, 399, 863, 1321, 1333
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	3 cut(s)	247, 361, 877
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	5 cut(s)	153, 334, 547, 652, 1263
BstMAI	GTCTC	2 cut(s)	76, 1130
BstMBI	GATC	5 cut(s)	150, 331, 544, 649, 1260
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 1304, 1371
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	2 cut(s)	582, 687
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	1324
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	150
BstXI	CCANNNNNNTGG	1 cut(s)	1222
BstYI	RGATCY	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	295, 317, 1036, 1115
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	3 cut(s)	247, 361, 877
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	5 cut(s)	164, 393, 798, 871, 1329
BtuMI	TCGCGA	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	1346
Cac8I	GCNNGC	3 cut(s)	534, 759, 1367
Cfr13I	GGNCC	1 cut(s)	996
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	1091
Csp6I	GTAC	1 cut(s)	1301
CspCI	CAANNNNNGTGG	2 cut(s)	580, 615
CviAII	CATG	9 cut(s)	186, 249, 260, 297, 335, 1079, 1111, 1216, 1388
CviQI	GTAC	1 cut(s)	1301
DdeI	CTNAG	5 cut(s)	58, 399, 863, 1321, 1333
DpnI	GATC	5 cut(s)	152, 333, 546, 651, 1262
DpnII	GATC	5 cut(s)	150, 331, 544, 649, 1260
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	996
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	4 cut(s)	363, 783, 882, 1110
Eco88I	CYCGRG	1 cut(s)	1127
EcoICRI	GAGCTC	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	996
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	198
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	9 cut(s)	189, 252, 263, 300, 338, 1082, 1114, 1219, 1391
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	9 cut(s)	185, 248, 259, 296, 334, 1078, 1110, 1215, 1387
FauNDI	CATATG	1 cut(s)	1234
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	2 cut(s)	36, 1243
Fnu4HI	GCNGC	2 cut(s)	1296, 1313
FokI	GGATG	3 cut(s)	254, 348, 884
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	2 cut(s)	1296, 1313
FspBI	CTAG	4 cut(s)	467, 636, 741, 966
GluI	GCNGC	2 cut(s)	1296, 1313
HaeIII	GGCC	4 cut(s)	295, 317, 1036, 1115
HgaI	GACGC	1 cut(s)	1091
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	9 cut(s)	189, 252, 263, 300, 338, 1082, 1114, 1219, 1391
HincII	GTYRAC	2 cut(s)	455, 1290
HindII	GTYRAC	2 cut(s)	455, 1290
HindIII	AAGCTT	2 cut(s)	473, 1372
HinfI	GANTC	3 cut(s)	206, 859, 1266
HphI	GGTGA	4 cut(s)	188, 890, 965, 1038
Hpy166II	GTNNAC	4 cut(s)	37, 455, 1244, 1290
Hpy188I	TCNGA	3 cut(s)	343, 814, 1265
Hpy188III	TCNNGA	7 cut(s)	77, 100, 144, 232, 374, 909, 1129
Hpy8I	GTNNAC	4 cut(s)	37, 455, 1244, 1290
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	3 cut(s)	338, 375, 1331
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	9 cut(s)	22, 164, 263, 304, 584, 632, 689, 737, 1232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 1304, 1371
HpyF3I	CTNAG	5 cut(s)	58, 399, 863, 1321, 1333
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	9 cut(s)	189, 252, 263, 300, 338, 1082, 1114, 1219, 1391
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	5 cut(s)	150, 331, 544, 649, 1260
Lsp1109I	GCAGC	1 cut(s)	1324
LweI	GCATC	2 cut(s)	641, 746
MaeI	CTAG	4 cut(s)	467, 636, 741, 966
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	5 cut(s)	802, 901, 976, 1026, 1358
MalI	GATC	5 cut(s)	152, 333, 546, 651, 1262
MboI	GATC	5 cut(s)	150, 331, 544, 649, 1260
MboII	GAAGA	8 cut(s)	248, 520, 525, 776, 952, 1077, 1080, 1174
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	6 cut(s)	53, 123, 395, 798, 1309, 1332
MluCI	AATT	6 cut(s)	107, 379, 418, 444, 1021, 1186
MlyI	GAGTC	1 cut(s)	1275
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	5 cut(s)	621, 726, 1155, 1250, 1376
MslI	CAYNNNNRTG	4 cut(s)	600, 705, 1220, 1237
MspA1I	CMGCKG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	301, 1304, 1371
NdeI	CATATG	1 cut(s)	1234
NdeII	GATC	5 cut(s)	150, 331, 544, 649, 1260
NlaIII	CATG	9 cut(s)	189, 252, 263, 300, 338, 1082, 1114, 1219, 1391
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	1 cut(s)	802
NruI	TCGCGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	206, 859
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	1297, 1314
PleI	GAGTC	1 cut(s)	1274
PpsI	GAGTC	1 cut(s)	1274
PpuMI	RGGWCCY	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	996
PspPPI	RGGWCCY	1 cut(s)	996
PstI	CTGCAG	2 cut(s)	586, 691
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	761
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	1302
RsaNI	GTAC	1 cut(s)	1301
RseI	CAYNNNNRTG	4 cut(s)	600, 705, 1220, 1237
SacI	GAGCTC	1 cut(s)	798
SaqAI	TTAA	5 cut(s)	621, 726, 1155, 1250, 1376
SatI	GCNGC	2 cut(s)	1296, 1313
Sau3AI	GATC	5 cut(s)	150, 331, 544, 649, 1260
Sau96I	GGNCC	1 cut(s)	996
SchI	GAGTC	1 cut(s)	1275
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	6 cut(s)	53, 123, 395, 798, 1309, 1332
SfaNI	GCATC	2 cut(s)	641, 746
SfcI	CTRYAG	2 cut(s)	582, 687
SinI	GGWCC	1 cut(s)	996
SmiMI	CAYNNNNRTG	4 cut(s)	600, 705, 1220, 1237
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
Sse9I	AATT	6 cut(s)	107, 379, 418, 444, 1021, 1186
SsiI	CCGC	2 cut(s)	876, 1295
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	467, 636, 741, 966
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	66, 448, 782, 1380
TasI	AATT	6 cut(s)	107, 379, 418, 444, 1021, 1186
TauI	GCSGC	1 cut(s)	1298
TfiI	GAWTC	2 cut(s)	206, 859
Tru1I	TTAA	5 cut(s)	621, 726, 1155, 1250, 1376
Tru9I	TTAA	5 cut(s)	621, 726, 1155, 1250, 1376
TscAI	CASTG	5 cut(s)	171, 400, 805, 871, 1329
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	1312
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	4 cut(s)	248, 515, 798, 905
TspRI	CASTG	5 cut(s)	171, 400, 805, 871, 1329
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	996
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	4 cut(s)	107, 379, 444, 1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	2 cut(s)	36, 1243
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	4 cut(s)	467, 636, 741, 966
ZraI	GACGTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.