Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Reverse (-)

2204264 .. 2206493

Gene Structure 2230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00388870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCAATGGCTTCAACTCTGCAAGGAGTTTTCGTAGACACCAACTTGGGCACTCGCTTAGCCATCGATGTCTCTCGCGATATCACAGCAAGGGACTTCAAGAGGGAATTTGAGAGAGAGCACTTCAAATGTTTCTCGAAATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAAAATCATGCTTGTATCACCTGGCTGATTCAATGACCATAAAGAGCGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCAAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTATTTGGCCTCAAAAGTGGTTGATCATGTATCTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTAAGAGTATTACAAAAGGCAATTGTAAGAAGTGGAGGGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTTTCTACTTCGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTAAGCCAGCTGAAGAAATGGCTTCTATATCGAGGAGAGATGAGCTCACTGTGACTGATGAGCTCACTGTGACTTCATCAGAAGCCGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCTGGACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGTCATCGCCATCACCAACTGACTTTGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGAAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAGTAAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAAAAAAAGTTTAGGTCTCAATTGTTAGCTCAGATTGTGATTAGTGACCATGAAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

384

Amino Acids

42.54

Weight (kDa)

9.07

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	789
AclWI	GGATC	2 cut(s)	145, 552
AcsI	RAATTY	4 cut(s)	107, 379, 444, 934
AcuI	CTGAAG	4 cut(s)	363, 678, 795, 1022
AcyI	GRCGYC	1 cut(s)	451
AfiI	CCNNNNNNNGG	3 cut(s)	238, 467, 1006
AgsI	TTSAA	7 cut(s)	15, 100, 127, 210, 772, 853, 1089
AjnI	CCWGG	2 cut(s)	198, 838
AluBI	AGCT	7 cut(s)	275, 475, 656, 691, 709, 1085, 1121
AluI	AGCT	7 cut(s)	275, 475, 656, 691, 709, 1085, 1121
Alw21I	GWGCWC	4 cut(s)	123, 395, 693, 711
Alw26I	GTCTC	3 cut(s)	76, 1042, 1113
AlwI	GGATC	2 cut(s)	145, 552
Ama87I	CYCGRG	1 cut(s)	1039
AoxI	GGCC	3 cut(s)	293, 315, 1025
ApeKI	GCWGC	1 cut(s)	1082
ApoI	RAATTY	4 cut(s)	107, 379, 444, 934
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	909
AsuHPI	GGTGA	4 cut(s)	188, 803, 878, 951
AvaI	CYCGRG	1 cut(s)	1039
AvaII	GGWCC	1 cut(s)	909
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BanII	GRGCYC	2 cut(s)	693, 711
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	4 cut(s)	123, 395, 693, 711
BbvI	GCAGC	1 cut(s)	1094
BccI	CCATC	5 cut(s)	71, 163, 236, 779, 964
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	2 cut(s)	200, 840
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	3 cut(s)	76, 1042, 1113
BfaI	CTAG	3 cut(s)	467, 636, 879
BfmI	CTRYAG	1 cut(s)	582
BisI	GCNGC	1 cut(s)	1083
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	1084
Bme1390I	CCNGG	2 cut(s)	200, 840
Bme18I	GGWCC	1 cut(s)	909
BmeT110I	CYCGRG	1 cut(s)	1039
BmgT120I	GGNCC	1 cut(s)	909
BmrFI	CCNGG	2 cut(s)	200, 840
BmsI	GCATC	1 cut(s)	641
BpiI	GAAGAC	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	675, 707
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	889
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	451
BsaI	GGTCTC	1 cut(s)	1113
BsaJI	CCNNGG	2 cut(s)	838, 944
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 467, 1006
Bse1I	ACTGG	1 cut(s)	556
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	200, 840
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	2 cut(s)	838, 944
BseGI	GGATG	4 cut(s)	247, 361, 790, 1062
BseLI	CCNNNNNNNGG	3 cut(s)	238, 467, 1006
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	2 cut(s)	790, 1136
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	694
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	1094
BsgI	GTGCAG	2 cut(s)	147, 1101
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	3 cut(s)	295, 317, 1027
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	4 cut(s)	123, 395, 693, 711
BsiHKCI	CYCGRG	1 cut(s)	1039
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	3 cut(s)	238, 467, 1006
BsmAI	GTCTC	3 cut(s)	76, 1042, 1113
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	3 cut(s)	295, 317, 1027
Bso31I	GGTCTC	1 cut(s)	1113
BsoBI	CYCGRG	1 cut(s)	1039
Bsp1286I	GDGCHC	5 cut(s)	53, 123, 395, 693, 711
Bsp143I	GATC	3 cut(s)	150, 331, 544
Bsp1720I	GCTNAGC	1 cut(s)	58
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	1 cut(s)	789
BspANI	GGCC	3 cut(s)	295, 317, 1027
BspCNI	CTCAG	2 cut(s)	789, 1135
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	586
BspPI	GGATC	2 cut(s)	145, 552
BspTNI	GGTCTC	1 cut(s)	1113
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	556
BssECI	CCNNGG	2 cut(s)	838, 944
BssMI	GATC	3 cut(s)	150, 331, 544
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	200, 840
Bst4CI	ACNGT	2 cut(s)	697, 715
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	534, 654
BstDEI	CTNAG	4 cut(s)	58, 399, 776, 1122
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	247, 361, 790, 1062
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	3 cut(s)	153, 334, 547
BstMAI	GTCTC	3 cut(s)	76, 1042, 1113
BstMBI	GATC	3 cut(s)	150, 331, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	200, 840
BstSCI	CCNGG	2 cut(s)	198, 838
BstSFI	CTRYAG	1 cut(s)	582
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	1094
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	3 cut(s)	295, 317, 1027
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	936
BtsCI	GGATG	4 cut(s)	247, 361, 790, 1062
BtsI	GCAGTG	2 cut(s)	393, 1155
BtsIMutI	CAGTG	6 cut(s)	164, 393, 693, 711, 784, 1155
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	534, 654
Cfr13I	GGNCC	1 cut(s)	909
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	1003
CviAII	CATG	8 cut(s)	186, 249, 260, 297, 335, 991, 1023, 1142
DdeI	CTNAG	4 cut(s)	58, 399, 776, 1122
DpnI	GATC	3 cut(s)	152, 333, 546
DpnII	GATC	3 cut(s)	150, 331, 544
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	2 cut(s)	691, 709
Eco24I	GRGCYC	2 cut(s)	693, 711
Eco31I	GGTCTC	1 cut(s)	1113
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	909
Eco53kI	GAGCTC	2 cut(s)	691, 709
Eco57I	CTGAAG	4 cut(s)	363, 678, 795, 1022
Eco88I	CYCGRG	1 cut(s)	1039
EcoICRI	GAGCTC	2 cut(s)	691, 709
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	909
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	198, 838
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	693, 711
FaeI	CATG	8 cut(s)	189, 252, 263, 300, 338, 994, 1026, 1145
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	8 cut(s)	185, 248, 259, 296, 334, 990, 1022, 1141
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	1083
FokI	GGATG	4 cut(s)	254, 348, 797, 1049
FriOI	GRGCYC	2 cut(s)	693, 711
Fsp4HI	GCNGC	1 cut(s)	1083
FspBI	CTAG	3 cut(s)	467, 636, 879
GluI	GCNGC	1 cut(s)	1083
HaeIII	GGCC	3 cut(s)	295, 317, 1027
HgaI	GACGC	1 cut(s)	1003
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	8 cut(s)	189, 252, 263, 300, 338, 994, 1026, 1145
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	206, 772
HphI	GGTGA	4 cut(s)	188, 803, 878, 951
Hpy166II	GTNNAC	2 cut(s)	37, 455
Hpy188I	TCNGA	3 cut(s)	343, 727, 1125
Hpy188III	TCNNGA	8 cut(s)	77, 100, 136, 144, 232, 374, 822, 1041
Hpy8I	GTNNAC	2 cut(s)	37, 455
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	338, 375
HpyCH4III	ACNGT	2 cut(s)	697, 715
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	7 cut(s)	22, 164, 263, 304, 584, 632, 1082
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	4 cut(s)	58, 399, 776, 1122
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	8 cut(s)	189, 252, 263, 300, 338, 994, 1026, 1145
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	3 cut(s)	150, 331, 544
Lsp1109I	GCAGC	1 cut(s)	1094
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	3 cut(s)	467, 636, 879
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	6 cut(s)	697, 715, 814, 889, 939, 1136
MalI	GATC	3 cut(s)	152, 333, 546
MboI	GATC	3 cut(s)	150, 331, 544
MboII	GAAGA	7 cut(s)	248, 520, 525, 671, 865, 989, 992
MfeI	CAATTG	2 cut(s)	418, 1112
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	5 cut(s)	53, 123, 395, 693, 711
MluCI	AATT	6 cut(s)	107, 379, 418, 444, 934, 1112
MmeI	TCCRAC	1 cut(s)	987
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	621, 648
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	1 cut(s)	656
MspR9I	CCNGG	2 cut(s)	200, 840
MunI	CAATTG	2 cut(s)	418, 1112
MvaI	CCWGG	2 cut(s)	200, 840
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	3 cut(s)	150, 331, 544
NlaIII	CATG	8 cut(s)	189, 252, 263, 300, 338, 994, 1026, 1145
NmuCI	GTSAC	3 cut(s)	697, 715, 1136
NruI	TCGCGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	206, 772
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	1084
PpuMI	RGGWCCY	1 cut(s)	909
Psp124BI	GAGCTC	2 cut(s)	693, 711
Psp5II	RGGWCCY	1 cut(s)	909
Psp6I	CCWGG	2 cut(s)	198, 838
PspGI	CCWGG	2 cut(s)	198, 838
PspPI	GGNCC	1 cut(s)	909
PspPPI	RGGWCCY	1 cut(s)	909
PstI	CTGCAG	1 cut(s)	586
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	656
RruI	TCGCGA	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	2 cut(s)	693, 711
SaqAI	TTAA	2 cut(s)	621, 648
SatI	GCNGC	1 cut(s)	1083
Sau3AI	GATC	3 cut(s)	150, 331, 544
Sau96I	GGNCC	1 cut(s)	909
ScrFI	CCNGG	2 cut(s)	200, 840
SduI	GDGCHC	5 cut(s)	53, 123, 395, 693, 711
SfaNI	GCATC	1 cut(s)	641
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	904
SmoI	CTYRAG	1 cut(s)	904
Sse9I	AATT	6 cut(s)	107, 379, 418, 444, 934, 1112
SsiI	CCGC	1 cut(s)	789
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	3 cut(s)	467, 636, 879
SstI	GAGCTC	2 cut(s)	693, 711
StyD4I	CCNGG	2 cut(s)	198, 838
TaaI	ACNGT	2 cut(s)	697, 715
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	66, 137, 448, 677
TaqII	GACCGA	1 cut(s)	936
TasI	AATT	6 cut(s)	107, 379, 418, 444, 934, 1112
TfiI	GAWTC	2 cut(s)	206, 772
Tru1I	TTAA	2 cut(s)	621, 648
Tru9I	TTAA	2 cut(s)	621, 648
TscAI	CASTG	6 cut(s)	171, 400, 700, 718, 784, 1155
TseFI	GTSAC	3 cut(s)	697, 715, 1136
TseI	GCWGC	1 cut(s)	1082
Tsp45I	GTSAC	3 cut(s)	697, 715, 1136
TspDTI	ATGAA	4 cut(s)	248, 515, 711, 818
TspRI	CASTG	6 cut(s)	171, 400, 700, 718, 784, 1155
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	4 cut(s)	107, 379, 444, 934
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	3 cut(s)	467, 636, 879
ZraI	GACGTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.