Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Forward (+)

45338470 .. 45339348

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGACTATAAAGAGCGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCGAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTACTTGGCCTCAAAAGTGGCTGATCATGTATCTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCTCAGAGTATTACAAAAGGCAATTGTAAGAGGTGGAGAGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGAAAACTTTTCTACTTTGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCCGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCCATATCGAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCAGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCCGAACAACACTTGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTGCCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAGTAAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAGAAAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.23

Weight (kDa)

9.62

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	244
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	1 cut(s)	561
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	719
AcsI	RAATTY	3 cut(s)	169, 234, 706
AcuI	CTGAAG	4 cut(s)	153, 468, 567, 795
AcyI	GRCGYC	1 cut(s)	241
AfiI	CCNNNNNNNGG	4 cut(s)	28, 257, 468, 779
AgsI	TTSAA	3 cut(s)	544, 625, 862
AluBI	AGCT	5 cut(s)	65, 265, 446, 481, 858
AluI	AGCT	5 cut(s)	65, 265, 446, 481, 858
Alw21I	GWGCWC	2 cut(s)	185, 483
Alw26I	GTCTC	1 cut(s)	815
AlwI	GGATC	1 cut(s)	342
Ama87I	CYCGRG	1 cut(s)	812
AoxI	GGCC	4 cut(s)	83, 105, 719, 798
ApeKI	GCWGC	1 cut(s)	855
ApoI	RAATTY	3 cut(s)	169, 234, 706
AspS9I	GGNCC	1 cut(s)	681
AsuHPI	GGTGA	3 cut(s)	575, 650, 723
AvaI	CYCGRG	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	681
BaeI	ACNNNNGTAYC	2 cut(s)	360, 393
BanII	GRGCYC	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	632
Bbv12I	GWGCWC	2 cut(s)	185, 483
BbvI	GCAGC	1 cut(s)	867
BccI	CCATC	4 cut(s)	26, 551, 730, 736
BceAI	ACGGC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	815
BfaI	CTAG	3 cut(s)	257, 426, 651
BisI	GCNGC	1 cut(s)	856
BlsI	GCNGC	1 cut(s)	857
Bme18I	GGWCC	1 cut(s)	681
BmeT110I	CYCGRG	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	681
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	632
BplI	GAGNNNNNCTC	4 cut(s)	172, 204, 465, 497
BpuEI	CTTGAG	1 cut(s)	661
BsaHI	GRCGYC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 257, 468, 779
Bse1I	ACTGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	716
BseGI	GGATG	4 cut(s)	37, 151, 562, 835
BseLI	CCNNNNNNNGG	4 cut(s)	28, 257, 468, 779
BseMII	CTCAG	2 cut(s)	203, 562
BseNI	ACTGG	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	867
BsgI	GTGCAG	1 cut(s)	874
BshFI	GGCC	4 cut(s)	85, 107, 721, 800
BsiHKAI	GWGCWC	2 cut(s)	185, 483
BsiHKCI	CYCGRG	1 cut(s)	812
BslI	CCNNNNNNNGG	4 cut(s)	28, 257, 468, 779
BsmAI	GTCTC	1 cut(s)	815
BsnI	GGCC	4 cut(s)	85, 107, 721, 800
BsoBI	CYCGRG	1 cut(s)	812
Bsp1286I	GDGCHC	2 cut(s)	185, 483
Bsp143I	GATC	2 cut(s)	121, 334
BspACI	CCGC	1 cut(s)	561
BspANI	GGCC	4 cut(s)	85, 107, 721, 800
BspCNI	CTCAG	2 cut(s)	202, 561
BspPI	GGATC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	346
BssECI	CCNNGG	1 cut(s)	716
BssMI	GATC	2 cut(s)	121, 334
BssNI	GRCGYC	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	324, 444
BstDEI	CTNAG	2 cut(s)	189, 548
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	4 cut(s)	37, 151, 562, 835
BstKTI	GATC	2 cut(s)	124, 337
BstMAI	GTCTC	1 cut(s)	815
BstMBI	GATC	2 cut(s)	121, 334
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	867
BstV2I	GAAGAC	1 cut(s)	632
BsuRI	GGCC	4 cut(s)	85, 107, 721, 800
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	4 cut(s)	37, 151, 562, 835
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	3 cut(s)	183, 483, 556
Cac8I	GCNNGC	2 cut(s)	324, 444
Cfr13I	GGNCC	1 cut(s)	681
CseI	GACGC	1 cut(s)	776
CviAII	CATG	6 cut(s)	39, 50, 87, 125, 764, 796
DdeI	CTNAG	2 cut(s)	189, 548
DpnI	GATC	2 cut(s)	123, 336
DpnII	GATC	2 cut(s)	121, 334
EaeI	YGGCCR	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	483
Eco47I	GGWCC	1 cut(s)	681
Eco53kI	GAGCTC	1 cut(s)	481
Eco57I	CTGAAG	4 cut(s)	153, 468, 567, 795
Eco88I	CYCGRG	1 cut(s)	812
EcoICRI	GAGCTC	1 cut(s)	481
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoO109I	RGGNCCY	1 cut(s)	681
EcoRI	GAATTC	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	483
FaeI	CATG	6 cut(s)	42, 53, 90, 128, 767, 799
FatI	CATG	6 cut(s)	38, 49, 86, 124, 763, 795
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	856
FokI	GGATG	4 cut(s)	44, 138, 569, 822
FriOI	GRGCYC	1 cut(s)	483
Fsp4HI	GCNGC	1 cut(s)	856
FspBI	CTAG	3 cut(s)	257, 426, 651
GluI	GCNGC	1 cut(s)	856
HaeIII	GGCC	4 cut(s)	85, 107, 721, 800
HgaI	GACGC	1 cut(s)	776
Hin1I	GRCGYC	1 cut(s)	241
Hin1II	CATG	6 cut(s)	42, 53, 90, 128, 767, 799
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	544
HphI	GGTGA	3 cut(s)	575, 650, 723
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	3 cut(s)	133, 192, 499
Hpy188III	TCNNGA	4 cut(s)	22, 164, 594, 814
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	243
HpyAV	CCTTC	2 cut(s)	128, 165
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	5 cut(s)	53, 94, 287, 422, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	189, 548
HpySE526I	ACGT	1 cut(s)	241
Hsp92I	GRCGYC	1 cut(s)	241
Hsp92II	CATG	6 cut(s)	42, 53, 90, 128, 767, 799
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	121, 334
LpnPI	CCDG	8 cut(s)	35, 177, 327, 336, 456, 504, 786, 852
Lsp1109I	GCAGC	1 cut(s)	867
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	3 cut(s)	257, 426, 651
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	4 cut(s)	487, 586, 661, 711
MalI	GATC	2 cut(s)	123, 336
MboI	GATC	2 cut(s)	121, 334
MboII	GAAGA	7 cut(s)	38, 310, 315, 461, 637, 762, 765
MfeI	CAATTG	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	185, 483
MluCI	AATT	4 cut(s)	169, 208, 234, 706
MseI	TTAA	1 cut(s)	411
MslI	CAYNNNNRTG	1 cut(s)	390
MspA1I	CMGCKG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	91
NdeII	GATC	2 cut(s)	121, 334
NlaIII	CATG	6 cut(s)	42, 53, 90, 128, 767, 799
NmeAIII	GCCGAG	1 cut(s)	697
NmuCI	GTSAC	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	857
PpuMI	RGGWCCY	1 cut(s)	681
Psp124BI	GAGCTC	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	681
PspPPI	RGGWCCY	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	446
RseI	CAYNNNNRTG	1 cut(s)	390
SacI	GAGCTC	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	856
Sau3AI	GATC	2 cut(s)	121, 334
Sau96I	GGNCC	1 cut(s)	681
SduI	GDGCHC	2 cut(s)	185, 483
SfaNI	GCATC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	681
SmiMI	CAYNNNNRTG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	676
SmoI	CTYRAG	1 cut(s)	676
Sse9I	AATT	4 cut(s)	169, 208, 234, 706
SsiI	CCGC	1 cut(s)	561
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	3 cut(s)	257, 426, 651
SstI	GAGCTC	1 cut(s)	483
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	2 cut(s)	238, 467
TasI	AATT	4 cut(s)	169, 208, 234, 706
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	190, 490, 556
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	855
Tsp45I	GTSAC	1 cut(s)	487
TspDTI	ATGAA	4 cut(s)	38, 305, 483, 590
TspRI	CASTG	3 cut(s)	190, 490, 556
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	681
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	3 cut(s)	169, 234, 706
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	3 cut(s)	257, 426, 651
ZraI	GACGTC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.