Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006692

Physical Location & Seq

Genomic Coordinates Forward (+)

43948353 .. 43950079

Gene Structure 1727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G028920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAATGGCTTCAACTCTGCAAGGAGTTTTCGTAGACACCAACTTGGGCACTTGCTTAGCCATCGATGTCTCTCGCGATATCACAGCAAGGGACTTCAAGAGGGAATTTGAGAGAGAGCACTTCAAATGTTTCTCCAAATCAGGAGAGATCCAAGTTTCTGCACTGATGGTAGAGCGAAAATCATGCTTGTACCACCTGGCAGATTCAATGACTATAAAGAGCGTTTTCCAGAAAGTGGATGGAACATGGTTTCTTCATGCAGAAGCGAGAGCTTTGAGTGATTGTAGTAGGCCATGTTTGCATAACTACTTGGCCTCAAAAGTGGCTGATCATGTATCTGAAGGTAGTGATGTATCTCATCCTTCTAATCCAGAAAATTTTGTTATGAGCACTGCCCAGAGTATTACAAAAGGCAATTGTAAGAGGTGGAGAGGAAAAAGAATTCGACGTCAACAACCTTTACTAGGAAAGCTTGGGAAACTTTTCTACTTCGCAAAGAAAAGGAAGAGAAGAAAGAATATTCATTTGCCAGCAGAAGTGGATCAACCTGGAATGGAAATCATTGGTGTTGATGATACTGCAGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTGGATCAAACTGGAATGGAAATCGTTGGTGTTGATGATACTGCAGTTCCTACGCACATTGATGAGAACAAGACTGCTCTTAATGATTGTGCATCTAGTAAAGAAGTTGAGCCAGCTGAAGAAATGGCTTCCATATCGAGGAGAGATGAGCTCACTGTGACTTCATCAGAAGCAGTAGTATCTGTATCTGGTATCATCAATAAATACTTTTTGAATCTCAGTGAGGATGGCGGTGATGTAAGTCCTACAACTTCAGTTACATCAAGAGTTCATAGTTCCCCTGAACAACACTCGAAGACTAAAGTAGGTGATATTTGTTCTAGCCGACAAGTTACTCCCTCTACCTCAAGGTCCTCAACCAAGTTTTCTGCCAAAAATTTGTTACCTCGGCCATCGCCATCACCAACTAACTTTGGGGGAAGAAGATACAAGCATGATAAACCTGAAGTTGGGAAGCGTCTTGTCATGGCCTCATATAGTCTCGGGATTTCTCCAAGTCAGAAACATCCTGCTATACATCTGTGCAGCTTCAAACAAGAAAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

43.82

Weight (kDa)

8.8

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006692)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55865
fragaria_vesca	FvH4_1g28370
prunus_persica	Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0496661
rosa_laevigata	RLG00000022513
rosa_multiflora	Rmu_sc0006111.1_g000001
rosa_roxburghii	Rroxscaffold_6G00388870
rosa_rugosa	Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300
rosa_samantha	Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500
rosa_wichuraiana	Rw3G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	1 cut(s)	36
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	876
AclWI	GGATC	3 cut(s)	145, 552, 657
AcoI	YGGCCR	1 cut(s)	1034
AcsI	RAATTY	4 cut(s)	107, 379, 444, 1021
AcuI	CTGAAG	4 cut(s)	363, 783, 882, 1110
AcyI	GRCGYC	1 cut(s)	451
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
AgsI	TTSAA	6 cut(s)	15, 100, 127, 210, 859, 1177
AjnI	CCWGG	2 cut(s)	198, 550
AluBI	AGCT	5 cut(s)	275, 475, 761, 796, 1173
AluI	AGCT	5 cut(s)	275, 475, 761, 796, 1173
Alw21I	GWGCWC	3 cut(s)	123, 395, 798
Alw26I	GTCTC	2 cut(s)	76, 1130
AlwI	GGATC	3 cut(s)	145, 552, 657
Ama87I	CYCGRG	1 cut(s)	1127
AoxI	GGCC	4 cut(s)	293, 315, 1034, 1113
ApeKI	GCWGC	1 cut(s)	1170
ApoI	RAATTY	4 cut(s)	107, 379, 444, 1021
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	996
AsuHPI	GGTGA	3 cut(s)	890, 965, 1038
AvaI	CYCGRG	1 cut(s)	1127
AvaII	GGWCC	1 cut(s)	996
BaeGI	GKGCMC	1 cut(s)	53
BaeI	ACNNNNGTAYC	4 cut(s)	570, 603, 675, 708
BanII	GRGCYC	1 cut(s)	798
BbsI	GAAGAC	1 cut(s)	947
Bbv12I	GWGCWC	3 cut(s)	123, 395, 798
BbvI	GCAGC	1 cut(s)	1182
BccI	CCATC	6 cut(s)	71, 163, 236, 866, 1045, 1051
BcgI	CGANNNNNNTGC	2 cut(s)	168, 202
BciT130I	CCWGG	2 cut(s)	200, 552
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	76, 1130
BfaI	CTAG	4 cut(s)	467, 636, 741, 966
BfmI	CTRYAG	2 cut(s)	582, 687
BisI	GCNGC	1 cut(s)	1171
BlpI	GCTNAGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	1172
Bme1390I	CCNGG	2 cut(s)	200, 552
Bme18I	GGWCC	1 cut(s)	996
BmeT110I	CYCGRG	1 cut(s)	1127
BmgT120I	GGNCC	1 cut(s)	996
BmrFI	CCNGG	2 cut(s)	200, 552
BmsI	GCATC	2 cut(s)	641, 746
BpiI	GAAGAC	1 cut(s)	947
BplI	GAGNNNNNCTC	2 cut(s)	780, 812
Bpu1102I	GCTNAGC	1 cut(s)	58
BpuEI	CTTGAG	1 cut(s)	976
Bsa29I	ATCGAT	1 cut(s)	66
BsaHI	GRCGYC	1 cut(s)	451
BsaJI	CCNNGG	1 cut(s)	1031
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
Bse1I	ACTGG	1 cut(s)	661
Bse3DI	GCAATG	1 cut(s)	12
BseBI	CCWGG	2 cut(s)	200, 552
BseCI	ATCGAT	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	1031
BseGI	GGATG	4 cut(s)	247, 361, 877, 1150
BseLI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
BseMI	GCAATG	1 cut(s)	12
BseMII	CTCAG	1 cut(s)	877
BseNI	ACTGG	1 cut(s)	661
BseRI	GAGGAG	1 cut(s)	799
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	1182
BsgI	GTGCAG	2 cut(s)	147, 1189
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	4 cut(s)	295, 317, 1036, 1115
BshVI	ATCGAT	1 cut(s)	66
BsiHKAI	GWGCWC	3 cut(s)	123, 395, 798
BsiHKCI	CYCGRG	1 cut(s)	1127
BslFI	GGGAC	1 cut(s)	107
BslI	CCNNNNNNNGG	4 cut(s)	238, 467, 783, 1094
BsmAI	GTCTC	2 cut(s)	76, 1130
BsmFI	GGGAC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	295, 317, 1036, 1115
BsoBI	CYCGRG	1 cut(s)	1127
Bsp1286I	GDGCHC	4 cut(s)	53, 123, 395, 798
Bsp143I	GATC	4 cut(s)	150, 331, 544, 649
Bsp1720I	GCTNAGC	1 cut(s)	58
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	1 cut(s)	876
BspANI	GGCC	4 cut(s)	295, 317, 1036, 1115
BspCNI	CTCAG	1 cut(s)	876
BspDI	ATCGAT	1 cut(s)	66
BspFNI	CGCG	1 cut(s)	78
BspMAI	CTGCAG	2 cut(s)	586, 691
BspPI	GGATC	3 cut(s)	145, 552, 657
BsrDI	GCAATG	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	661
BssECI	CCNNGG	1 cut(s)	1031
BssMI	GATC	4 cut(s)	150, 331, 544, 649
BssNI	GRCGYC	1 cut(s)	451
Bst2UI	CCWGG	2 cut(s)	200, 552
Bst4CI	ACNGT	1 cut(s)	802
Bst6I	CTCTTC	1 cut(s)	503
BstACI	GRCGYC	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	534, 759
BstDEI	CTNAG	2 cut(s)	58, 863
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	4 cut(s)	247, 361, 877, 1150
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	153, 334, 547, 652
BstMAI	GTCTC	2 cut(s)	76, 1130
BstMBI	GATC	4 cut(s)	150, 331, 544, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	200, 552
BstSCI	CCNGG	2 cut(s)	198, 550
BstSFI	CTRYAG	2 cut(s)	582, 687
BstSLI	GKGCMC	1 cut(s)	53
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	1182
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	4 cut(s)	295, 317, 1036, 1115
BsuTUI	ATCGAT	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	4 cut(s)	247, 361, 877, 1150
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	4 cut(s)	164, 393, 798, 871
BtuMI	TCGCGA	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	534, 759
Cfr13I	GGNCC	1 cut(s)	996
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	1091
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	7 cut(s)	186, 249, 260, 297, 335, 1079, 1111
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	2 cut(s)	58, 863
DpnI	GATC	4 cut(s)	152, 333, 546, 651
DpnII	GATC	4 cut(s)	150, 331, 544, 649
EaeI	YGGCCR	1 cut(s)	1034
Eam1104I	CTCTTC	1 cut(s)	503
EarI	CTCTTC	1 cut(s)	503
Ecl136II	GAGCTC	1 cut(s)	796
Eco24I	GRGCYC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	996
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	4 cut(s)	363, 783, 882, 1110
Eco88I	CYCGRG	1 cut(s)	1127
EcoICRI	GAGCTC	1 cut(s)	796
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoO109I	RGGNCCY	1 cut(s)	996
EcoRI	GAATTC	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	198, 550
EcoRV	GATATC	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	798
FaeI	CATG	7 cut(s)	189, 252, 263, 300, 338, 1082, 1114
FaqI	GGGAC	1 cut(s)	107
FatI	CATG	7 cut(s)	185, 248, 259, 296, 334, 1078, 1110
FbaI	TGATCA	1 cut(s)	331
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	1171
FokI	GGATG	4 cut(s)	254, 348, 884, 1137
FriOI	GRGCYC	1 cut(s)	798
Fsp4HI	GCNGC	1 cut(s)	1171
FspBI	CTAG	4 cut(s)	467, 636, 741, 966
GluI	GCNGC	1 cut(s)	1171
HaeIII	GGCC	4 cut(s)	295, 317, 1036, 1115
HgaI	GACGC	1 cut(s)	1091
Hin1I	GRCGYC	1 cut(s)	451
Hin1II	CATG	7 cut(s)	189, 252, 263, 300, 338, 1082, 1114
HincII	GTYRAC	1 cut(s)	455
HindII	GTYRAC	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	473
HinfI	GANTC	2 cut(s)	206, 859
HphI	GGTGA	3 cut(s)	890, 965, 1038
Hpy166II	GTNNAC	2 cut(s)	37, 455
Hpy188I	TCNGA	3 cut(s)	343, 814, 1146
Hpy188III	TCNNGA	7 cut(s)	77, 100, 144, 232, 374, 909, 1129
Hpy8I	GTNNAC	2 cut(s)	37, 455
Hpy99I	CGWCG	1 cut(s)	453
HpyAV	CCTTC	2 cut(s)	338, 375
HpyCH4III	ACNGT	1 cut(s)	802
HpyCH4IV	ACGT	1 cut(s)	451
HpyCH4V	TGCA	9 cut(s)	22, 164, 263, 304, 584, 632, 689, 737, 1170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	2 cut(s)	58, 863
HpySE526I	ACGT	1 cut(s)	451
Hsp92I	GRCGYC	1 cut(s)	451
Hsp92II	CATG	7 cut(s)	189, 252, 263, 300, 338, 1082, 1114
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	150, 331, 544, 649
Lsp1109I	GCAGC	1 cut(s)	1182
LweI	GCATC	2 cut(s)	641, 746
MaeI	CTAG	4 cut(s)	467, 636, 741, 966
MaeII	ACGT	1 cut(s)	451
MaeIII	GTNAC	4 cut(s)	802, 901, 976, 1026
MalI	GATC	4 cut(s)	152, 333, 546, 651
MboI	GATC	4 cut(s)	150, 331, 544, 649
MboII	GAAGA	7 cut(s)	248, 520, 525, 776, 952, 1077, 1080
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	4 cut(s)	53, 123, 395, 798
MluCI	AATT	5 cut(s)	107, 379, 418, 444, 1021
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	2 cut(s)	621, 726
MslI	CAYNNNNRTG	2 cut(s)	600, 705
MspA1I	CMGCKG	1 cut(s)	761
MspR9I	CCNGG	2 cut(s)	200, 552
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	200, 552
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	4 cut(s)	150, 331, 544, 649
NlaIII	CATG	7 cut(s)	189, 252, 263, 300, 338, 1082, 1114
NmeAIII	GCCGAG	1 cut(s)	1012
NmuCI	GTSAC	1 cut(s)	802
NruI	TCGCGA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	206, 859
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	1172
PpuMI	RGGWCCY	1 cut(s)	996
Psp124BI	GAGCTC	1 cut(s)	798
Psp5II	RGGWCCY	1 cut(s)	996
Psp6I	CCWGG	2 cut(s)	198, 550
PspGI	CCWGG	2 cut(s)	198, 550
PspPI	GGNCC	1 cut(s)	996
PspPPI	RGGWCCY	1 cut(s)	996
PstI	CTGCAG	2 cut(s)	586, 691
PsuI	RGATCY	1 cut(s)	150
PvuII	CAGCTG	1 cut(s)	761
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	2 cut(s)	600, 705
SacI	GAGCTC	1 cut(s)	798
SaqAI	TTAA	2 cut(s)	621, 726
SatI	GCNGC	1 cut(s)	1171
Sau3AI	GATC	4 cut(s)	150, 331, 544, 649
Sau96I	GGNCC	1 cut(s)	996
ScrFI	CCNGG	2 cut(s)	200, 552
SduI	GDGCHC	4 cut(s)	53, 123, 395, 798
SfaNI	GCATC	2 cut(s)	641, 746
SfcI	CTRYAG	2 cut(s)	582, 687
SinI	GGWCC	1 cut(s)	996
SmiMI	CAYNNNNRTG	2 cut(s)	600, 705
SmlI	CTYRAG	1 cut(s)	991
SmoI	CTYRAG	1 cut(s)	991
Sse9I	AATT	5 cut(s)	107, 379, 418, 444, 1021
SsiI	CCGC	1 cut(s)	876
SspI	AATATT	1 cut(s)	523
SspMI	CTAG	4 cut(s)	467, 636, 741, 966
SstI	GAGCTC	1 cut(s)	798
StyD4I	CCNGG	2 cut(s)	198, 550
TaaI	ACNGT	1 cut(s)	802
TaiI	ACGT	1 cut(s)	454
TaqI	TCGA	4 cut(s)	66, 448, 782, 938
TasI	AATT	5 cut(s)	107, 379, 418, 444, 1021
TfiI	GAWTC	2 cut(s)	206, 859
Tru1I	TTAA	2 cut(s)	621, 726
Tru9I	TTAA	2 cut(s)	621, 726
TscAI	CASTG	4 cut(s)	171, 400, 805, 871
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	1 cut(s)	1170
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	4 cut(s)	248, 515, 798, 905
TspRI	CASTG	4 cut(s)	171, 400, 805, 871
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	996
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	4 cut(s)	107, 379, 444, 1021
XcmI	CCANNNNNNNNNTGG	1 cut(s)	239
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	4 cut(s)	467, 636, 741, 966
ZraI	GACGTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.