ubiquitin protein ligase activity
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G55865 |
| fragaria_vesca | FvH4_1g28370 |
| prunus_persica | Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 Prupe.8G267500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr3g0496661 |
| rosa_laevigata | RLG00000022513 |
| rosa_multiflora | Rmu_sc0006111.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00388870 |
| rosa_rugosa | Rorug03G0285000 Rorug03G0285100 Rorug03G0285200 Rorug03G0285200 Rorug03G0285300 |
| rosa_samantha | Rh3AG330400 Rh3BG366100 Rh3BG366200 Rh3BG366300 Rh3CG363100 Rh3DG366400 Rh3DG366500 |
| rosa_wichuraiana | Rw3G028920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 30 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 1 cut(s) | 212 |
| AclWI | GGATC | 1 cut(s) | 139 |
| AcsI | RAATTY | 1 cut(s) | 101 |
| AgsI | TTSAA | 4 cut(s) | 9, 94, 121, 222 |
| Alw21I | GWGCWC | 1 cut(s) | 117 |
| Alw26I | GTCTC | 1 cut(s) | 70 |
| AlwI | GGATC | 1 cut(s) | 139 |
| ApoI | RAATTY | 1 cut(s) | 101 |
| BaeGI | GKGCMC | 1 cut(s) | 47 |
| Bbv12I | GWGCWC | 1 cut(s) | 117 |
| BccI | CCATC | 2 cut(s) | 65, 157 |
| BcoDI | GTCTC | 1 cut(s) | 70 |
| BlpI | GCTNAGC | 1 cut(s) | 52 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 52 |
| Bsa29I | ATCGAT | 1 cut(s) | 60 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 12, 42, 173, 203 |
| BseCI | ATCGAT | 1 cut(s) | 60 |
| BseSI | GKGCMC | 1 cut(s) | 47 |
| BsgI | GTGCAG | 1 cut(s) | 141 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshVI | ATCGAT | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 1 cut(s) | 117 |
| BslFI | GGGAC | 1 cut(s) | 101 |
| BsmAI | GTCTC | 1 cut(s) | 70 |
| BsmFI | GGGAC | 1 cut(s) | 101 |
| Bsp1286I | GDGCHC | 2 cut(s) | 47, 117 |
| Bsp143I | GATC | 1 cut(s) | 144 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 52 |
| Bsp68I | TCGCGA | 1 cut(s) | 72 |
| BspACI | CCGC | 1 cut(s) | 212 |
| BspDI | ATCGAT | 1 cut(s) | 60 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspPI | GGATC | 1 cut(s) | 139 |
| BssMI | GATC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 1 cut(s) | 52 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstKTI | GATC | 1 cut(s) | 147 |
| BstMAI | GTCTC | 1 cut(s) | 70 |
| BstMBI | GATC | 1 cut(s) | 144 |
| BstSLI | GKGCMC | 1 cut(s) | 47 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstX2I | RGATCY | 1 cut(s) | 144 |
| BstYI | RGATCY | 1 cut(s) | 144 |
| Bsu15I | ATCGAT | 1 cut(s) | 60 |
| BsuTUI | ATCGAT | 1 cut(s) | 60 |
| BtsIMutI | CAGTG | 1 cut(s) | 158 |
| BtuMI | TCGCGA | 1 cut(s) | 72 |
| ClaI | ATCGAT | 1 cut(s) | 60 |
| CviJI | RGCY | 2 cut(s) | 5, 56 |
| CviKI_1 | RGCY | 2 cut(s) | 5, 56 |
| DdeI | CTNAG | 1 cut(s) | 52 |
| DpnI | GATC | 1 cut(s) | 146 |
| DpnII | GATC | 1 cut(s) | 144 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| FaqI | GGGAC | 1 cut(s) | 101 |
| FblI | GTMKAC | 1 cut(s) | 30 |
| Hpy166II | GTNNAC | 1 cut(s) | 31 |
| Hpy188III | TCNNGA | 3 cut(s) | 71, 94, 138 |
| Hpy8I | GTNNAC | 1 cut(s) | 31 |
| HpyAV | CCTTC | 1 cut(s) | 228 |
| HpyCH4V | TGCA | 4 cut(s) | 16, 158, 169, 238 |
| HpyF3I | CTNAG | 1 cut(s) | 52 |
| Kzo9I | GATC | 1 cut(s) | 144 |
| LpnPI | CCDG | 1 cut(s) | 123 |
| MaeIII | GTNAC | 1 cut(s) | 230 |
| MalI | GATC | 1 cut(s) | 146 |
| MboI | GATC | 1 cut(s) | 144 |
| MboII | GAAGA | 1 cut(s) | 167 |
| MflI | RGATCY | 1 cut(s) | 144 |
| MhlI | GDGCHC | 2 cut(s) | 47, 117 |
| MluCI | AATT | 2 cut(s) | 101, 170 |
| MnlI | CCTC | 1 cut(s) | 90 |
| MseI | TTAA | 1 cut(s) | 244 |
| MvnI | CGCG | 1 cut(s) | 72 |
| NdeII | GATC | 1 cut(s) | 144 |
| NruI | TCGCGA | 1 cut(s) | 72 |
| PsuI | RGATCY | 1 cut(s) | 144 |
| RruI | TCGCGA | 1 cut(s) | 72 |
| SaqAI | TTAA | 1 cut(s) | 244 |
| Sau3AI | GATC | 1 cut(s) | 144 |
| SduI | GDGCHC | 2 cut(s) | 47, 117 |
| SetI | ASST | 2 cut(s) | 186, 237 |
| Sse9I | AATT | 2 cut(s) | 101, 170 |
| SsiI | CCGC | 1 cut(s) | 212 |
| SspI | AATATT | 1 cut(s) | 242 |
| TaqI | TCGA | 1 cut(s) | 60 |
| TasI | AATT | 2 cut(s) | 101, 170 |
| Tru1I | TTAA | 1 cut(s) | 244 |
| Tru9I | TTAA | 1 cut(s) | 244 |
| TscAI | CASTG | 1 cut(s) | 165 |
| TspDTI | ATGAA | 1 cut(s) | 167 |
| TspRI | CASTG | 1 cut(s) | 165 |
| XapI | RAATTY | 1 cut(s) | 101 |
| XmiI | GTMKAC | 1 cut(s) | 30 |