Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Reverse (-)

21515405 .. 21518270

Gene Structure 2866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G58110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCTAGCTCCAAGGGATCACAGAGTGTTAGAAACTTGATGTACCCGGGAAAGCATGCTTTGCTCCCACCAAAAATACCGTTTCCTAGTGTATCAGCATCGTATTCCGAGTATATTCCTACTGGTTTGATTGGTTCAAGACATGGTCAGAAGCTTAGTAATGAGAAAACACATCACCAGCGAACTTCCTCCGAGAGCCATTTGGTAGAAGAGCTTCCCTTTTGGCTTGATGATCTTCTCAATGAGCAGCCGGAAAGCCCTGCTCGAAAATGTGGTCATCGGCGTTCATCAAGTGACTCTTACGCTTATCTAGATGTGGCTAATGCTACAAACATAAGTTTGACTCTCCAAAATGATTTCAGTTATAGGAATACTGTTTTATCCACTCAAAGAGGAGTCCAAGAGCTTGACCGGAATAAAAATGCTCAGGATGCTGCCTTCTACTCTGGTGCTAGTTTTCTGAAACAGAAGAGTCGTCAGCGGGATTCTTTGGTGGCAACTGGGGCTTGTCCTTCTTGGTTACCTTTCGCTCGTGAGAACGGTGGCGGAAAAAACTTGGGAGCTTTATATATGTCTCAAGATGCAACAGTAATATCGTCAGAAAGAAAGAACTATGCTGAACCTTTTTCTCATGACCCAAAGATGTTATCTTCTGAGGAAAACAACTCCAATCCTTCGCCTGTGACTTATGAAGCTGACAACACAAAACGAGCCAAACAGCAATTTGCACAAAGATCACGGGTCCGTAAGCTCCAGTACATATCTGAGCTAGAAAGAAATGTACAGACATTGCAGGCAGAAGGCTCCAAAGTTTCAGCTGAACTTGATTTTCTCAACCAGAGGAATCTTATTCTGAGTATGGAAAATAAAGCTCTCAAGAAGCGTCTCGAAAGTATAGCTCAGGAGAAGCTTATCAAACAATTGGAACAAGAAGTGTTGGAAAAGGAGATTGGGAGACTACGAGCGTTGTATCAGCAACAACAACAAACTCAAAAACCATCAGCCAGTCGCGGACGTGCTACTAGCAAAGATCTCGACTCTCAGTTCTCCAGTCTTTCACTGAACACCAAAGATTCCAACTGTAGGCGTGACTCTGTATCTGTGATGGGTCAATTCCACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

374

Amino Acids

42.1

Weight (kDa)

9.36

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	3 cut(s)	481, 546, 1011
AclWI	GGATC	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	3 cut(s)	44, 758, 783
AfiI	CCNNNNNNNGG	1 cut(s)	1083
AgsI	TTSAA	1 cut(s)	138
AjiI	CACGTC	1 cut(s)	1016
AjuI	GAANNNNNNNTTGG	2 cut(s)	933, 965
Alw26I	GTCTC	3 cut(s)	579, 890, 949
AlwI	GGATC	1 cut(s)	25
Ama87I	CYCGRG	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	247, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	2 cut(s)	47, 48
AsuHPI	GGTGA	1 cut(s)	167
AsuNHI	GCTAGC	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	742
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BauI	CACGAG	1 cut(s)	531
BbvI	GCAGC	2 cut(s)	259, 421
BccI	CCATC	2 cut(s)	1006, 1099
BcgI	CGANNNNNNTGC	2 cut(s)	1015, 1049
BcnI	CCSGG	2 cut(s)	47, 48
BcoDI	GTCTC	3 cut(s)	579, 890, 949
BfaI	CTAG	6 cut(s)	6, 87, 311, 453, 770, 1023
BfmI	CTRYAG	1 cut(s)	1081
BglII	AGATCT	1 cut(s)	1030
BisI	GCNGC	2 cut(s)	248, 435
BlsI	GCNGC	2 cut(s)	249, 436
Bme1390I	CCNGG	2 cut(s)	47, 48
Bme18I	GGWCC	1 cut(s)	742
BmeT110I	CYCGRG	1 cut(s)	46
BmgBI	CACGTC	1 cut(s)	1016
BmgT120I	GGNCC	1 cut(s)	742
BmiI	GGNNCC	2 cut(s)	743, 805
BmrFI	CCNGG	2 cut(s)	47, 48
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	3 cut(s)	107, 421, 571
BmtI	GCTAGC	1 cut(s)	9
BmuI	ACTGGG	1 cut(s)	510
BpmI	CTGGAG	2 cut(s)	737, 1033
Bpu10I	CCTNAGC	2 cut(s)	426, 900
BpuEI	CTTGAG	2 cut(s)	561, 860
BpuMI	CCSGG	2 cut(s)	47, 48
BsaJI	CCNNGG	2 cut(s)	12, 46
BsaWI	WCCGGW	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	1083
Bse1I	ACTGG	5 cut(s)	127, 505, 754, 1005, 1050
Bse3DI	GCAATG	1 cut(s)	788
BseDI	CCNNGG	2 cut(s)	12, 46
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	1083
BseMI	GCAATG	1 cut(s)	788
BseMII	CTCAG	6 cut(s)	440, 645, 756, 845, 914, 1055
BseNI	ACTGG	5 cut(s)	127, 505, 754, 1005, 1050
BseRI	GAGGAG	1 cut(s)	408
BseXI	GCAGC	2 cut(s)	259, 421
Bsh1236I	CGCG	1 cut(s)	1011
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	3 cut(s)	47, 251, 412
BslI	CCNNNNNNNGG	1 cut(s)	1083
BsmAI	GTCTC	3 cut(s)	579, 890, 949
BsmBI	CGTCTC	1 cut(s)	890
BsoBI	CYCGRG	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	4 cut(s)	17, 232, 734, 1030
BspACI	CCGC	3 cut(s)	481, 546, 1011
BspCNI	CTCAG	6 cut(s)	439, 646, 757, 846, 913, 1054
BspFNI	CGCG	1 cut(s)	1011
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	743, 805
BspOI	GCTAGC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	25
BspQI	GCTCTTC	1 cut(s)	204
BsrDI	GCAATG	1 cut(s)	788
BsrGI	TGTACA	1 cut(s)	781
BsrI	ACTGG	5 cut(s)	127, 505, 754, 1005, 1050
BssECI	CCNNGG	2 cut(s)	12, 46
BssMI	GATC	4 cut(s)	17, 232, 734, 1030
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	1 cut(s)	531
Bst4CI	ACNGT	5 cut(s)	81, 376, 542, 589, 1082
Bst6I	CTCTTC	2 cut(s)	204, 464
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	781
BstC8I	GCNNGC	3 cut(s)	7, 57, 795
BstDEI	CTNAG	7 cut(s)	155, 426, 654, 765, 854, 900, 1041
BstEII	GGTNACC	1 cut(s)	519
BstF5I	GGATG	1 cut(s)	436
BstFNI	CGCG	1 cut(s)	1011
BstKTI	GATC	4 cut(s)	20, 235, 737, 1033
BstMAI	GTCTC	3 cut(s)	579, 890, 949
BstMBI	GATC	4 cut(s)	17, 232, 734, 1030
BstMWI	GCNNNNNNNGC	3 cut(s)	61, 431, 503
BstNSI	RCATGY	1 cut(s)	59
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	2 cut(s)	45, 46
BstSFI	CTRYAG	1 cut(s)	1081
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	2 cut(s)	259, 421
BstX2I	RGATCY	1 cut(s)	1030
BstYI	RGATCY	1 cut(s)	1030
BtrI	CACGTC	1 cut(s)	1016
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	3 cut(s)	7, 57, 795
CciI	TCATGA	1 cut(s)	631
Cfr13I	GGNCC	1 cut(s)	742
Cfr9I	CCCGGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	872
Csp6I	GTAC	3 cut(s)	43, 757, 782
CviAII	CATG	3 cut(s)	56, 143, 632
CviQI	GTAC	3 cut(s)	43, 757, 782
DdeI	CTNAG	7 cut(s)	155, 426, 654, 765, 854, 900, 1041
DpnI	GATC	4 cut(s)	19, 234, 736, 1032
DpnII	GATC	4 cut(s)	17, 232, 734, 1030
DraIII	CACNNNGTG	1 cut(s)	26
Eam1104I	CTCTTC	2 cut(s)	204, 464
EarI	CTCTTC	2 cut(s)	204, 464
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	742
Eco88I	CYCGRG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	890
FaeI	CATG	3 cut(s)	59, 146, 635
FalI	AAGNNNNNCTT	2 cut(s)	283, 315
FatI	CATG	3 cut(s)	55, 142, 631
FauI	CCCGC	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	248, 435
FokI	GGATG	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	248, 435
FspBI	CTAG	6 cut(s)	6, 87, 311, 453, 770, 1023
GluI	GCNGC	2 cut(s)	248, 435
GsuI	CTGGAG	2 cut(s)	737, 1033
HapII	CCGG	3 cut(s)	47, 251, 412
HgaI	GACGC	1 cut(s)	872
Hin1II	CATG	3 cut(s)	59, 146, 635
HindIII	AAGCTT	2 cut(s)	152, 908
HinfI	GANTC	9 cut(s)	296, 343, 396, 472, 485, 844, 1037, 1073, 1091
HpaII	CCGG	3 cut(s)	47, 251, 412
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	8 cut(s)	109, 150, 193, 462, 601, 655, 766, 855
HpyAV	CCTTC	4 cut(s)	448, 522, 684, 794
HpyCH4III	ACNGT	5 cut(s)	81, 376, 542, 589, 1082
HpyCH4IV	ACGT	1 cut(s)	1015
HpyCH4V	TGCA	3 cut(s)	584, 728, 793
HpyF10VI	GCNNNNNNNGC	3 cut(s)	61, 431, 503
HpyF3I	CTNAG	7 cut(s)	155, 426, 654, 765, 854, 900, 1041
HpySE526I	ACGT	1 cut(s)	1015
Hsp92II	CATG	3 cut(s)	59, 146, 635
Kzo9I	GATC	4 cut(s)	17, 232, 734, 1030
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	5 cut(s)	14, 69, 560, 756, 809
Lsp1109I	GCAGC	2 cut(s)	259, 421
LweI	GCATC	3 cut(s)	107, 421, 571
MaeI	CTAG	6 cut(s)	6, 87, 311, 453, 770, 1023
MaeII	ACGT	1 cut(s)	1015
MaeIII	GTNAC	4 cut(s)	293, 519, 682, 1088
MalI	GATC	4 cut(s)	19, 234, 736, 1032
MboI	GATC	4 cut(s)	17, 232, 734, 1030
MboII	GAAGA	4 cut(s)	221, 227, 481, 642
MfeI	CAATTG	1 cut(s)	920
MflI	RGATCY	1 cut(s)	1030
MluCI	AATT	3 cut(s)	722, 920, 1112
MlyI	GAGTC	6 cut(s)	290, 337, 405, 481, 1031, 1085
MmeI	TCCRAC	2 cut(s)	918, 1101
MnlI	CCTC	4 cut(s)	199, 386, 649, 834
MroXI	GAANNNNTTC	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	481, 818
MspI	CCGG	3 cut(s)	47, 251, 412
MspR9I	CCNGG	2 cut(s)	47, 48
MunI	CAATTG	1 cut(s)	920
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	3 cut(s)	61, 431, 503
NciI	CCSGG	2 cut(s)	47, 48
NdeII	GATC	4 cut(s)	17, 232, 734, 1030
NheI	GCTAGC	1 cut(s)	5
NlaIII	CATG	3 cut(s)	59, 146, 635
NlaIV	GGNNCC	2 cut(s)	743, 805
NmuCI	GTSAC	3 cut(s)	293, 682, 1088
NspI	RCATGY	1 cut(s)	59
PaeI	GCATGC	1 cut(s)	59
PagI	TCATGA	1 cut(s)	631
PciSI	GCTCTTC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	485, 844, 1073
PflFI	GACNNNGTC	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	249, 436
PleI	GAGTC	6 cut(s)	290, 337, 404, 480, 1031, 1085
PpsI	GAGTC	6 cut(s)	290, 337, 404, 480, 1031, 1085
PspEI	GGTNACC	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	743, 805
PspPI	GGNCC	1 cut(s)	742
PsuI	RGATCY	1 cut(s)	1030
PsyI	GACNNNGTC	1 cut(s)	144
PvuII	CAGCTG	1 cut(s)	818
RsaI	GTAC	3 cut(s)	44, 758, 783
RsaNI	GTAC	3 cut(s)	43, 757, 782
SapI	GCTCTTC	1 cut(s)	204
SatI	GCNGC	2 cut(s)	248, 435
Sau3AI	GATC	4 cut(s)	17, 232, 734, 1030
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	6 cut(s)	290, 337, 405, 481, 1031, 1085
ScrFI	CCNGG	2 cut(s)	47, 48
SfaNI	GCATC	3 cut(s)	107, 421, 571
SfcI	CTRYAG	1 cut(s)	1081
SinI	GGWCC	1 cut(s)	742
SmaI	CCCGGG	1 cut(s)	48
SmlI	CTYRAG	2 cut(s)	576, 875
SmoI	CTYRAG	2 cut(s)	576, 875
SphI	GCATGC	1 cut(s)	59
Sse9I	AATT	3 cut(s)	722, 920, 1112
SsiI	CCGC	3 cut(s)	481, 546, 1011
SspMI	CTAG	6 cut(s)	6, 87, 311, 453, 770, 1023
StyD4I	CCNGG	2 cut(s)	45, 46
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	5 cut(s)	81, 376, 542, 589, 1082
TaiI	ACGT	1 cut(s)	1018
TaqI	TCGA	3 cut(s)	265, 888, 1035
TasI	AATT	3 cut(s)	722, 920, 1112
TatI	WGTACW	2 cut(s)	756, 781
TfiI	GAWTC	3 cut(s)	485, 844, 1073
TscAI	CASTG	1 cut(s)	1065
TseFI	GTSAC	3 cut(s)	293, 682, 1088
TseI	GCWGC	2 cut(s)	247, 434
Tsp45I	GTSAC	3 cut(s)	293, 682, 1088
TspDTI	ATGAA	2 cut(s)	276, 705
TspGWI	ACGGA	1 cut(s)	734
TspMI	CCCGGG	1 cut(s)	46
TspRI	CASTG	1 cut(s)	1065
Tth111I	GACNNNGTC	1 cut(s)	144
VpaK11BI	GGWCC	1 cut(s)	742
XbaI	TCTAGA	1 cut(s)	310
XceI	RCATGY	1 cut(s)	59
XmaI	CCCGGG	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	6 cut(s)	6, 87, 311, 453, 770, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.