AT4G06598

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007086
Physical Location & Seq
Forward (+)
3663328 .. 3664857
1530 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G06598.1

Sequence Viewer

Length: 798 bp
ATGGCAAGTTCAAAGGGGTCTCAGAATCATAGAAATCTGGGATGCAATGGGAAACAAGCTTTACTGCCTCCGAAAAGTCCGTTTACGGGTGGTCCAACGTTTAGTGCAGATTTTGTTCCAAGTAGTGTGATTGGATCCAAGGCTGTTCAGAAGCTTGGAGAAGGAAATGCCAATCATCATCGAACTTCATCTGAGAGTTTTCTTATTGAGGAACAGCCTTCTTGGCTTGACGATCTTCTCAACGAACCTGAAACACCTGTACGGAAAGGAGGGCATCGACGGTCATCGAGTGATTCATTTGCATATGTAGATGTTCCTGTTGGTTTTGATGTTGATTACACGCTTTGGGATGGTGGTAGATATAATAACAATAATGGTTTCTCTAATCACGTTAGAGGTCCCAAGGAGTCTGATTACCTTAGAAGCCAGCCTGTTCCTTTCTACCCTTCAGCTCATTTGTCCAAACAGAAAATAAGACCGTGGGATTCATTACCAGATTCCGGTGCTCGCCCGAACAGTAGTTCTGGTTGTTTGGAGAGTAGCTCTATCACAAGATCAGGGTCTTCTGGTAGCCTACGTGATACAGAAAAGGCTTATTCTGCTGCTGATAGCAAGAAAGATTTCATAAATAATTTCGCAAAGTCGTCATTCGAAAAACGGGATAATCCTCTGGCTAAGTCTGCTACTTCCGAGGCTGATACGAAACGTGCTAGACAGCAGTTTGCACAGCGCTCTCGAGTCCGTAAAATTCAGTACATAGCTGAACTGGAAAGGAACGTTCAGATGTTACAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.22

Weight (kDa)

9.37

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 98, 777
AclWI GGATC 2 cut(s) 129, 142
AcsI RAATTY 1 cut(s) 747
AcuI CTGAAG 1 cut(s) 432
AfaI GTAC 2 cut(s) 261, 755
AfeI AGCGCT 1 cut(s) 731
AfiI CCNNNNNNNGG 2 cut(s) 86, 500
AgsI TTSAA 1 cut(s) 12
AluBI AGCT 5 cut(s) 59, 154, 452, 543, 761
AluI AGCT 5 cut(s) 59, 154, 452, 543, 761
Alw21I GWGCWC 1 cut(s) 508
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 129, 142
Ama87I CYCGRG 1 cut(s) 735
Aor51HI AGCGCT 1 cut(s) 731
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 1 cut(s) 747
Asp700I GAANNNNTTC 1 cut(s) 620
AspLEI GCGC 1 cut(s) 732
AspS9I GGNCC 2 cut(s) 92, 398
AsuII TTCGAA 1 cut(s) 651
AvaI CYCGRG 1 cut(s) 735
AvaII GGWCC 2 cut(s) 92, 398
BamHI GGATCC 1 cut(s) 134
BbsI GAAGAC 1 cut(s) 555
Bbv12I GWGCWC 1 cut(s) 508
BbvI GCAGC 1 cut(s) 589
BccI CCATC 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 24
BfaI CTAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 733
BglI GCCNNNNNGGC 1 cut(s) 223
BisI GCNGC 1 cut(s) 603
BlsI GCNGC 1 cut(s) 604
Bme18I GGWCC 2 cut(s) 92, 398
BmeT110I CYCGRG 1 cut(s) 735
BmgT120I GGNCC 2 cut(s) 92, 398
BmiI GGNNCC 2 cut(s) 136, 400
BmsI GCATC 2 cut(s) 32, 283
BpiI GAAGAC 1 cut(s) 555
BplI GAGNNNNNCTC 2 cut(s) 527, 559
Bpu14I TTCGAA 1 cut(s) 651
BsaAI YACGTR 1 cut(s) 578
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 138, 402, 479, 690
BsaWI WCCGGW 1 cut(s) 500
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 500
Bse1I ACTGG 1 cut(s) 771
Bse3DI GCAATG 1 cut(s) 52
BseDI CCNNGG 4 cut(s) 138, 402, 479, 690
BseGI GGATG 2 cut(s) 47, 355
BseLI CCNNNNNNNGG 2 cut(s) 86, 500
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 2 cut(s) 35, 183
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 589
BsgI GTGCAG 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 508
BsiHKCI CYCGRG 1 cut(s) 735
BsiSI CCGG 1 cut(s) 501
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 2 cut(s) 86, 500
BsmAI GTCTC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 384
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 735
Bsp119I TTCGAA 1 cut(s) 651
Bsp1286I GDGCHC 1 cut(s) 508
Bsp143I GATC 3 cut(s) 134, 232, 554
BspCNI CTCAG 2 cut(s) 34, 184
BspLI GGNNCC 2 cut(s) 136, 400
BspPI GGATC 2 cut(s) 129, 142
BspT104I TTCGAA 1 cut(s) 651
BspTNI GGTCTC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 52
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 4 cut(s) 138, 402, 479, 690
BssMI GATC 3 cut(s) 134, 232, 554
BssT1I CCWWGG 2 cut(s) 138, 402
Bst4CI ACNGT 3 cut(s) 282, 480, 518
BstBAI YACGTR 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 651
BstC8I GCNNGC 2 cut(s) 428, 508
BstDEI CTNAG 4 cut(s) 21, 192, 419, 675
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 47, 355
BstH2I RGCGCY 1 cut(s) 733
BstHHI GCGC 1 cut(s) 732
BstKTI GATC 3 cut(s) 137, 235, 557
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 134, 232, 554
BstMWI GCNNNNNNNGC 3 cut(s) 223, 599, 680
BstV1I GCAGC 1 cut(s) 589
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 2 cut(s) 47, 355
Cac8I GCNNGC 2 cut(s) 428, 508
CfoI GCGC 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 92, 398
Csp6I GTAC 2 cut(s) 260, 754
CviQI GTAC 2 cut(s) 260, 754
DdeI CTNAG 4 cut(s) 21, 192, 419, 675
DpnI GATC 3 cut(s) 136, 234, 556
DpnII GATC 3 cut(s) 134, 232, 554
Eco130I CCWWGG 2 cut(s) 138, 402
Eco31I GGTCTC 1 cut(s) 24
Eco47I GGWCC 2 cut(s) 92, 398
Eco47III AGCGCT 1 cut(s) 731
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 735
EcoO109I RGGNCCY 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 138, 402
ErhI CCWWGG 2 cut(s) 138, 402
FaiI YATR 7 cut(s) 30, 304, 306, 363, 626, 758, 796
FaqI GGGAC 1 cut(s) 384
FauNDI CATATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 603
FokI GGATG 2 cut(s) 54, 362
Fsp4HI GCNGC 1 cut(s) 603
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 731
GluI GCNGC 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 733
HapII CCGG 1 cut(s) 501
HhaI GCGC 1 cut(s) 732
Hin6I GCGC 1 cut(s) 730
HinP1I GCGC 1 cut(s) 730
HindIII AAGCTT 2 cut(s) 57, 152
HinfI GANTC 6 cut(s) 25, 293, 407, 485, 497, 738
HpaII CCGG 1 cut(s) 501
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 7 cut(s) 24, 72, 150, 193, 412, 691, 783
Hpy188III TCNNGA 1 cut(s) 735
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 155, 228, 456
HpyCH4III ACNGT 3 cut(s) 282, 480, 518
HpyCH4IV ACGT 5 cut(s) 98, 390, 577, 706, 777
HpyCH4V TGCA 4 cut(s) 45, 107, 302, 725
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 599, 680
HpyF3I CTNAG 4 cut(s) 21, 192, 419, 675
HpySE526I ACGT 5 cut(s) 98, 390, 577, 706, 777
HspAI GCGC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 134, 232, 554
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 2 cut(s) 32, 283
MaeI CTAG 1 cut(s) 711
MaeII ACGT 5 cut(s) 98, 390, 577, 706, 777
MaeIII GTNAC 1 cut(s) 786
MalI GATC 3 cut(s) 136, 234, 556
MboI GATC 3 cut(s) 134, 232, 554
MboII GAAGA 2 cut(s) 227, 555
MflI RGATCY 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 508
MluCI AATT 2 cut(s) 631, 747
MlyI GAGTC 2 cut(s) 416, 747
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 6 cut(s) 78, 202, 263, 389, 678, 685
MroXI GAANNNNTTC 1 cut(s) 620
MspI CCGG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 223, 599, 680
NdeI CATATG 1 cut(s) 304
NdeII GATC 3 cut(s) 134, 232, 554
NlaIV GGNNCC 2 cut(s) 136, 400
NspV TTCGAA 1 cut(s) 651
PaeR7I CTCGAG 1 cut(s) 735
PdmI GAANNNNTTC 1 cut(s) 620
PfeI GAWTC 4 cut(s) 25, 293, 485, 497
PkrI GCNGC 1 cut(s) 604
PleI GAGTC 2 cut(s) 415, 746
PpsI GAGTC 2 cut(s) 415, 746
Ppu21I YACGTR 1 cut(s) 578
PpuMI RGGWCCY 1 cut(s) 398
Psp1406I AACGTT 2 cut(s) 98, 777
Psp5II RGGWCCY 1 cut(s) 398
PspN4I GGNNCC 2 cut(s) 136, 400
PspPI GGNCC 2 cut(s) 92, 398
PspPPI RGGWCCY 1 cut(s) 398
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 2 cut(s) 261, 755
RsaNI GTAC 2 cut(s) 260, 754
SatI GCNGC 1 cut(s) 603
Sau3AI GATC 3 cut(s) 134, 232, 554
Sau96I GGNCC 2 cut(s) 92, 398
SchI GAGTC 2 cut(s) 416, 747
SduI GDGCHC 1 cut(s) 508
SfaNI GCATC 2 cut(s) 32, 283
Sfr274I CTCGAG 1 cut(s) 735
SfuI TTCGAA 1 cut(s) 651
SinI GGWCC 2 cut(s) 92, 398
SlaI CTCGAG 1 cut(s) 735
SmlI CTYRAG 1 cut(s) 735
SmoI CTYRAG 1 cut(s) 735
Sse9I AATT 2 cut(s) 631, 747
SspMI CTAG 1 cut(s) 711
StyI CCWWGG 2 cut(s) 138, 402
TaaI ACNGT 3 cut(s) 282, 480, 518
TaiI ACGT 5 cut(s) 101, 393, 580, 709, 780
TaqI TCGA 5 cut(s) 181, 277, 287, 651, 736
TasI AATT 2 cut(s) 631, 747
TatI WGTACW 1 cut(s) 753
TfiI GAWTC 4 cut(s) 25, 293, 485, 497
TseI GCWGC 1 cut(s) 602
TspDTI ATGAA 4 cut(s) 177, 285, 477, 613
TspGWI ACGGA 3 cut(s) 69, 277, 731
VpaK11BI GGWCC 2 cut(s) 92, 398
XapI RAATTY 1 cut(s) 747
XhoI CTCGAG 1 cut(s) 735
XmnI GAANNNNTTC 1 cut(s) 620
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.