Rmu_sc0011957.1_g000001

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011957.1
OG0007086
Physical Location & Seq
Reverse (-)
114 .. 839
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011957.1_g000001.1.cds

Sequence Viewer

Length: 726 bp
atggcaaactccaagagttcatcaaatatgagaaatctgatgtattccggaaagcatcctttgcttcctcccaaaagtccatttcctagtgtttccccatcgtatgcagattatgtctttagtcctgcgataggatcaaaaactattcagaagcctagagagggaaatgcacatcaccagcgaacttcctcagagagtcttcttatagaggagcaaccttcttggcttgatgatctcctaaacgagccggacacacctatacgcagaggaggccaccgtcgttcttcaagcgactcatttgcatatgtagatgcaattaatgtttctaacattgattattctgctcaagatgagtacaaatacaataatatgttttctgcaccctcttggggaactcaagattttgaccctcagacagatttaagacatgcttcattatactccgaactgaacttggtgaagcagaagaataaggcatgggagtcttctgtcagtgccataagtaacccaagaagcctttcttctgtcaaggataacattgttcttcacagttcaggatctttatctactccgcaagaagcagatggggttgtctctacagcaagtgaaaagcaagatcagattgaatctggcccacatgatgctaaagctccctctgagaaaaaggacaattccaatgctaagccatatgcatccgagacagatgcaaaacgcgcaaaacagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.55

Weight (kDa)

6.17

Isoelectric Point (pI)

67.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 47
AciI CCGC 1 cut(s) 572
AclWI GGATC 2 cut(s) 142, 565
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 3 cut(s) 131, 161, 389
AgsI TTSAA 2 cut(s) 288, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
AluBI AGCT 1 cut(s) 650
AluI AGCT 1 cut(s) 650
Alw26I GTCTC 2 cut(s) 598, 692
AlwI GGATC 2 cut(s) 142, 565
Aor13HI TCCGGA 1 cut(s) 47
AoxI GGCC 2 cut(s) 271, 631
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 632
AsuHPI GGTGA 2 cut(s) 167, 469
BbsI GAAGAC 2 cut(s) 191, 477
BccI CCATC 2 cut(s) 106, 578
BcgI CGANNNNNNTGC 4 cut(s) 281, 315, 686, 720
BcoDI GTCTC 2 cut(s) 598, 692
BfaI CTAG 2 cut(s) 87, 156
BfmI CTRYAG 1 cut(s) 597
BlpI GCTNAGC 1 cut(s) 681
BmgT120I GGNCC 1 cut(s) 632
BmsI GCATC 5 cut(s) 64, 301, 631, 694, 701
BpiI GAAGAC 2 cut(s) 191, 477
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 2 cut(s) 330, 381
BsaBI GATNNNNATC 1 cut(s) 562
BsaWI WCCGGW 1 cut(s) 47
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 161, 389
Bse8I GATNNNNATC 1 cut(s) 562
BseAI TCCGGA 1 cut(s) 47
BseGI GGATG 2 cut(s) 55, 692
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 3 cut(s) 131, 161, 389
BseMII CTCAG 3 cut(s) 204, 425, 648
BseRI GAGGAG 2 cut(s) 224, 282
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 714
BshFI GGCC 2 cut(s) 273, 633
BsiSI CCGG 2 cut(s) 48, 248
BslI CCNNNNNNNGG 3 cut(s) 131, 161, 389
BsmAI GTCTC 2 cut(s) 598, 692
BsnI GGCC 2 cut(s) 273, 633
Bsp13I TCCGGA 1 cut(s) 47
Bsp143I GATC 4 cut(s) 134, 232, 557, 616
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 1 cut(s) 572
BspANI GGCC 2 cut(s) 273, 633
BspCNI CTCAG 3 cut(s) 203, 424, 649
BspEI TCCGGA 1 cut(s) 47
BspFNI CGCG 1 cut(s) 714
BspPI GGATC 2 cut(s) 142, 565
BssMI GATC 4 cut(s) 134, 232, 557, 616
Bst4CI ACNGT 3 cut(s) 278, 551, 723
BstAPI GCANNNNNTGC 1 cut(s) 61
BstDEI CTNAG 4 cut(s) 190, 411, 657, 681
BstENI CCTNNNNNAGG 1 cut(s) 129
BstF5I GGATG 2 cut(s) 55, 692
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 716
BstKTI GATC 4 cut(s) 137, 235, 560, 619
BstMAI GTCTC 2 cut(s) 598, 692
BstMBI GATC 4 cut(s) 134, 232, 557, 616
BstMWI GCNNNNNNNGC 3 cut(s) 61, 270, 713
BstNSI RCATGY 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 714
BstV2I GAAGAC 2 cut(s) 191, 477
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 2 cut(s) 273, 633
BtsCI GGATG 2 cut(s) 55, 692
BtsIMutI CAGTG 1 cut(s) 499
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 632
Csp6I GTAC 1 cut(s) 355
CviAII CATG 3 cut(s) 428, 477, 638
CviJI RGCY 8 cut(s) 154, 226, 247, 273, 516, 633, 650, 685
CviKI_1 RGCY 8 cut(s) 154, 226, 247, 273, 516, 633, 650, 685
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 4 cut(s) 190, 411, 657, 681
DpnI GATC 4 cut(s) 136, 234, 559, 618
DpnII GATC 4 cut(s) 134, 232, 557, 616
EcoNI CCTNNNNNAGG 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 3 cut(s) 431, 480, 641
FalI AAGNNNNNCTT 4 cut(s) 415, 447, 505, 537
FatI CATG 3 cut(s) 427, 476, 637
FauNDI CATATG 2 cut(s) 304, 688
FokI GGATG 2 cut(s) 42, 679
FspBI CTAG 2 cut(s) 87, 156
GlaI GCGC 1 cut(s) 715
HaeIII GGCC 2 cut(s) 273, 633
HapII CCGG 2 cut(s) 48, 248
HhaI GCGC 1 cut(s) 716
Hin1II CATG 3 cut(s) 431, 480, 641
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HinfI GANTC 4 cut(s) 196, 293, 482, 626
HpaII CCGG 2 cut(s) 48, 248
HphI GGTGA 2 cut(s) 167, 469
Hpy188I TCNGA 8 cut(s) 39, 150, 193, 414, 445, 621, 658, 697
Hpy188III TCNNGA 4 cut(s) 48, 347, 398, 555
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 228
HpyCH4III ACNGT 3 cut(s) 278, 551, 723
HpyCH4V TGCA 7 cut(s) 107, 170, 302, 314, 380, 692, 707
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 270, 713
HpyF3I CTNAG 4 cut(s) 190, 411, 657, 681
Hsp92II CATG 3 cut(s) 431, 480, 641
HspAI GCGC 1 cut(s) 714
Kpn2I TCCGGA 1 cut(s) 47
Kzo9I GATC 4 cut(s) 134, 232, 557, 616
LmnI GCTCC 2 cut(s) 211, 655
LpnPI CCDG 6 cut(s) 61, 138, 191, 261, 540, 615
LweI GCATC 5 cut(s) 64, 301, 631, 694, 701
MaeI CTAG 2 cut(s) 87, 156
MaeIII GTNAC 1 cut(s) 503
MalI GATC 4 cut(s) 136, 234, 559, 618
MboI GATC 4 cut(s) 134, 232, 557, 616
MboII GAAGA 6 cut(s) 191, 276, 477, 478, 513, 536
MflI RGATCY 1 cut(s) 557
MluCI AATT 2 cut(s) 315, 670
MlyI GAGTC 3 cut(s) 205, 287, 491
MnlI CCTC 9 cut(s) 78, 154, 199, 202, 260, 263, 394, 420, 664
Mph1103I ATGCAT 1 cut(s) 694
MroI TCCGGA 1 cut(s) 47
MroXI GAANNNNTTC 1 cut(s) 517
MseI TTAA 2 cut(s) 318, 422
MspI CCGG 2 cut(s) 48, 248
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 61, 270, 713
NdeI CATATG 2 cut(s) 304, 688
NdeII GATC 4 cut(s) 134, 232, 557, 616
NlaIII CATG 3 cut(s) 431, 480, 641
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 517
PfeI GAWTC 1 cut(s) 626
PleI GAGTC 3 cut(s) 204, 287, 490
PpsI GAGTC 3 cut(s) 204, 287, 490
PshBI ATTAAT 1 cut(s) 318
PspPI GGNCC 1 cut(s) 632
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
SaqAI TTAA 2 cut(s) 318, 422
Sau3AI GATC 4 cut(s) 134, 232, 557, 616
Sau96I GGNCC 1 cut(s) 632
SchI GAGTC 3 cut(s) 205, 287, 491
SetI ASST 3 cut(s) 220, 259, 652
SfaNI GCATC 5 cut(s) 64, 301, 631, 694, 701
SfcI CTRYAG 1 cut(s) 597
SmlI CTYRAG 2 cut(s) 345, 396
SmoI CTYRAG 2 cut(s) 345, 396
Sse9I AATT 2 cut(s) 315, 670
SsiI CCGC 1 cut(s) 572
SspMI CTAG 2 cut(s) 87, 156
TaaI ACNGT 3 cut(s) 278, 551, 723
TasI AATT 2 cut(s) 315, 670
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 2 cut(s) 318, 422
Tru9I TTAA 2 cut(s) 318, 422
TscAI CASTG 1 cut(s) 499
TspDTI ATGAA 2 cut(s) 9, 423
TspRI CASTG 1 cut(s) 499
VspI ATTAAT 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 129
XceI RCATGY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 517
XspI CTAG 2 cut(s) 87, 156
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.