Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

20405955 .. 20411779

Gene Structure 5825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g20730.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGAACTGGAAAAGGAGAATAAAAAGGCACCACTTGCAAGGCTTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAGGAGAGCTTCTTCTTCGAAGACAAGAGGGGAATCAAATCATTGATATCGCAGAAACCCTAGGACAGAGAAACAACTCTGCTTCTTCGATCATTGCGTTTCAAGATCTCGATTGTTCGTTCAATACAGGGACTCATTGTGCTTCAGCTATGGCAAACTCCAAGGGTTCATCAAATATCAGAAATTTTATGTATTCCGGAAAGCATCCTTTACTTCCTCCTAAAAGTCCATTTCCTAGTGTTCCCCCATCATATGCAGATTATGTCCTTAGTCCTGCAATTGGATCAAAAACTGTTCAGAAGCCTAGGGAGGGAAATGCACATCACCAGCGGACTTCCTCAGAGAGCCTACTTATAGAGGAACAACCTTCTTGGCTTGATGATCTCCTTAATGAGCCAGACACACCTATACGCAGAGGAGGTCATCGTCGTTCATCAAGTGACTCTTTTGCATATGTGGATGCCATTAATGCTTCTAATCTTGATTATGCCACTCAAGATGAGTACAAATATCATAATATGATTTCTGCACCCTCTTGGGGATCCCAAGACCTTGATCCTCGAAAAGATTTACGACATGCTTCATTATACACAGAACTGAACTTGGTGAAGCAGAAGAATAAAGCATGGGAGTCGTCTTTGAATAGTGTAAATAACCTGAACGGCCTTCCTTCTGTCAGGGATAACATTGTTCTTCAGAGTTCAGGATCATTATCTACACCACAAGAAGCTGATGGGATTGCCTCTATAGCGAGTGAAAAGCATGATCATGTTGATTCTGGTCTTCATGATCCAAAGTCTTCTTCTGAGAGAAAGGACAATTCCAATGCTAAGCCTTATGCATCTGAGACTGATGCAAAACGTGCTAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAGTACATAGCAGAGCTGGAGAGGAATGTACAAGCTTTACAGGCAGAAGGGACTGAAGTTTCGGCTGAGCTTGAGTTTCTCAACCAGCAGAATATGATTCTGAGCATGGAGAACAAAGCGCTCAAGCAGCGCTTAGAAAATATAGGACAGGAGCAGCTTATCAAATACTTGGAACAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGTCTTGTATGAGCAACAACAGCAGCAGCATCAACAGCAACAGCAGCGACCTTCTTCTAGCCATAGACGCTCTAACAGTAGAGACCTTGATTCCCAATTTGCAAACCTGTCTTTGAAACACAAGGATGCAAATGCAGGTCGTGACCCTGTAACAGGCGCACTTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

457

Amino Acids

51.75

Weight (kDa)

7.82

Isoelectric Point (pI)

62.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1325
AccB1I	GGYRCC	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	281
AciI	CCGC	1 cut(s)	415
AclI	AACGTT	1 cut(s)	970
AclWI	GGATC	6 cut(s)	376, 621, 634, 635, 799, 869
AcsI	RAATTY	1 cut(s)	268
AcuI	CTGAAG	4 cut(s)	213, 764, 974, 1065
AfaI	GTAC	3 cut(s)	590, 995, 1020
AfeI	AGCGCT	2 cut(s)	1110, 1121
AfiI	CCNNNNNNNGG	4 cut(s)	365, 395, 623, 1352
AgsI	TTSAA	4 cut(s)	188, 208, 727, 1315
AjuI	GAANNNNNNNTTGG	2 cut(s)	871, 903
AluBI	AGCT	7 cut(s)	94, 233, 815, 1006, 1025, 1060, 1147
AluI	AGCT	7 cut(s)	94, 233, 815, 1006, 1025, 1060, 1147
Alw26I	GTCTC	2 cut(s)	926, 1275
AlwI	GGATC	6 cut(s)	376, 621, 634, 635, 799, 869
Aor13HI	TCCGGA	1 cut(s)	281
Aor51HI	AGCGCT	2 cut(s)	1110, 1121
AoxI	GGCC	1 cut(s)	748
ApeKI	GCWGC	5 cut(s)	1117, 1144, 1222, 1225, 1243
ApoI	RAATTY	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	1033, 1065
AseI	ATTAAT	1 cut(s)	552
AspA2I	CCTAGG	2 cut(s)	145, 389
AspLEI	GCGC	3 cut(s)	1111, 1122, 1358
AsuHPI	GGTGA	2 cut(s)	401, 703
AsuII	TTCGAA	1 cut(s)	103
AvrII	CCTAGG	2 cut(s)	145, 389
BamHI	GGATCC	1 cut(s)	626
BanI	GGYRCC	1 cut(s)	27
BbsI	GAAGAC	3 cut(s)	112, 860, 876
BbvI	GCAGC	5 cut(s)	1129, 1156, 1234, 1237, 1255
BccI	CCATC	2 cut(s)	340, 812
BceAI	ACGGC	1 cut(s)	763
BcgI	CGANNNNNNTGC	2 cut(s)	699, 733
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	926, 1275
BfaI	CTAG	4 cut(s)	146, 321, 390, 1257
BfmI	CTRYAG	1 cut(s)	831
BfoI	RGCGCY	2 cut(s)	1112, 1123
BfuAI	ACCTGC	1 cut(s)	1325
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	5 cut(s)	1118, 1145, 1223, 1226, 1244
BlnI	CCTAGG	2 cut(s)	145, 389
BlpI	GCTNAGC	2 cut(s)	915, 1056
BlsI	GCNGC	5 cut(s)	1119, 1146, 1224, 1227, 1245
BmiI	GGNNCC	2 cut(s)	29, 628
BmsI	GCATC	6 cut(s)	298, 535, 928, 935, 1237, 1315
BpiI	GAAGAC	3 cut(s)	112, 860, 876
BpmI	CTGGAG	1 cut(s)	1028
Bpu1102I	GCTNAGC	2 cut(s)	915, 1056
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	3 cut(s)	564, 1082, 1097
BsaBI	GATNNNNATC	1 cut(s)	796
BsaI	GGTCTC	1 cut(s)	1275
BsaJI	CCNNGG	3 cut(s)	145, 246, 389
BsaWI	WCCGGW	1 cut(s)	281
Bsc4I	CCNNNNNNNGG	4 cut(s)	365, 395, 623, 1352
Bse1I	ACTGG	1 cut(s)	11
Bse3DI	GCAATG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	796
BseAI	TCCGGA	1 cut(s)	281
BseDI	CCNNGG	3 cut(s)	145, 246, 389
BseGI	GGATG	3 cut(s)	289, 550, 1330
BseJI	GATNNNNATC	1 cut(s)	796
BseLI	CCNNNNNNNGG	4 cut(s)	365, 395, 623, 1352
BseMI	GCAATG	1 cut(s)	177
BseMII	CTCAG	5 cut(s)	438, 882, 921, 1047, 1082
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	2 cut(s)	102, 516
BseXI	GCAGC	5 cut(s)	1129, 1156, 1234, 1237, 1255
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	750
BshNI	GGYRCC	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	2 cut(s)	229, 1054
BslI	CCNNNNNNNGG	4 cut(s)	365, 395, 623, 1352
BsmAI	GTCTC	2 cut(s)	926, 1275
BsmFI	GGGAC	2 cut(s)	229, 1054
BsnI	GGCC	1 cut(s)	750
Bso31I	GGTCTC	1 cut(s)	1275
Bsp119I	TTCGAA	1 cut(s)	103
Bsp13I	TCCGGA	1 cut(s)	281
Bsp1407I	TGTACA	1 cut(s)	1018
Bsp143I	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
Bsp1720I	GCTNAGC	2 cut(s)	915, 1056
BspACI	CCGC	1 cut(s)	415
BspANI	GGCC	1 cut(s)	750
BspCNI	CTCAG	5 cut(s)	437, 883, 922, 1048, 1083
BspEI	TCCGGA	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	871
BspLI	GGNNCC	2 cut(s)	29, 628
BspMI	ACCTGC	1 cut(s)	1325
BspPI	GGATC	6 cut(s)	376, 621, 634, 635, 799, 869
BspT104I	TTCGAA	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	27
BspTNI	GGTCTC	1 cut(s)	1275
BsrDI	GCAATG	1 cut(s)	177
BsrGI	TGTACA	1 cut(s)	1018
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	145, 246, 389
BssMI	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
BssT1I	CCWWGG	3 cut(s)	145, 246, 389
Bst4CI	ACNGT	2 cut(s)	379, 1277
BstAPI	GCANNNNNTGC	2 cut(s)	34, 947
BstAUI	TGTACA	1 cut(s)	1018
BstBI	TTCGAA	1 cut(s)	103
BstDEI	CTNAG	8 cut(s)	353, 424, 891, 915, 930, 1056, 1091, 1123
BstENI	CCTNNNNNAGG	1 cut(s)	1350
BstF5I	GGATG	3 cut(s)	289, 550, 1330
BstH2I	RGCGCY	2 cut(s)	1112, 1123
BstHHI	GCGC	3 cut(s)	1111, 1122, 1358
BstKTI	GATC	9 cut(s)	177, 193, 371, 469, 629, 643, 794, 853, 877
BstMAI	GTCTC	2 cut(s)	926, 1275
BstMBI	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
BstNSI	RCATGY	1 cut(s)	665
BstSFI	CTRYAG	1 cut(s)	831
BstV1I	GCAGC	5 cut(s)	1129, 1156, 1234, 1237, 1255
BstV2I	GAAGAC	3 cut(s)	112, 860, 876
BstX2I	RGATCY	2 cut(s)	190, 626
BstYI	RGATCY	2 cut(s)	190, 626
BsuRI	GGCC	1 cut(s)	750
BtsCI	GGATG	3 cut(s)	289, 550, 1330
BveI	ACCTGC	1 cut(s)	1325
CciI	TCATGA	1 cut(s)	871
CfoI	GCGC	3 cut(s)	1111, 1122, 1358
CseI	GACGC	1 cut(s)	1275
Csp6I	GTAC	3 cut(s)	589, 994, 1019
CviAII	CATG	6 cut(s)	662, 711, 848, 854, 872, 1096
CviQI	GTAC	3 cut(s)	589, 994, 1019
DdeI	CTNAG	8 cut(s)	353, 424, 891, 915, 930, 1056, 1091, 1123
DpnI	GATC	9 cut(s)	176, 192, 370, 468, 628, 642, 793, 852, 876
DpnII	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
Eco130I	CCWWGG	3 cut(s)	145, 246, 389
Eco31I	GGTCTC	1 cut(s)	1275
Eco32I	GATATC	1 cut(s)	133
Eco47III	AGCGCT	2 cut(s)	1110, 1121
Eco57I	CTGAAG	4 cut(s)	213, 764, 974, 1065
EcoNI	CCTNNNNNAGG	1 cut(s)	1350
EcoRV	GATATC	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	145, 246, 389
EcoT22I	ATGCAT	1 cut(s)	928
ErhI	CCWWGG	3 cut(s)	145, 246, 389
FaeI	CATG	6 cut(s)	665, 714, 851, 857, 875, 1099
FalI	AAGNNNNNCTT	4 cut(s)	514, 546, 1106, 1138
FaqI	GGGAC	2 cut(s)	229, 1054
FatI	CATG	6 cut(s)	661, 710, 847, 853, 871, 1095
FauNDI	CATATG	2 cut(s)	337, 538
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	5 cut(s)	1118, 1145, 1223, 1226, 1244
FokI	GGATG	3 cut(s)	276, 557, 1337
Fsp4HI	GCNGC	5 cut(s)	1118, 1145, 1223, 1226, 1244
FspBI	CTAG	4 cut(s)	146, 321, 390, 1257
GlaI	GCGC	3 cut(s)	1110, 1121, 1357
GluI	GCNGC	5 cut(s)	1118, 1145, 1223, 1226, 1244
GsuI	CTGGAG	1 cut(s)	1028
HaeII	RGCGCY	2 cut(s)	1112, 1123
HaeIII	GGCC	1 cut(s)	750
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	1275
HhaI	GCGC	3 cut(s)	1111, 1122, 1358
Hin1II	CATG	6 cut(s)	665, 714, 851, 857, 875, 1099
Hin6I	GCGC	3 cut(s)	1109, 1120, 1356
HinP1I	GCGC	3 cut(s)	1109, 1120, 1356
HindIII	AAGCTT	1 cut(s)	1023
HinfI	GANTC	8 cut(s)	118, 217, 527, 716, 860, 1087, 1200, 1289
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	401, 703
Hpy166II	GTNNAC	1 cut(s)	974
Hpy188I	TCNGA	8 cut(s)	266, 384, 427, 783, 892, 931, 984, 1092
Hpy188III	TCNNGA	8 cut(s)	188, 194, 282, 566, 581, 789, 872, 1340
Hpy8I	GTNNAC	1 cut(s)	974
Hpy99I	CGWCG	1 cut(s)	516
HpyAV	CCTTC	5 cut(s)	462, 761, 765, 1031, 1260
HpyCH4III	ACNGT	2 cut(s)	379, 1277
HpyCH4IV	ACGT	2 cut(s)	946, 970
HpyF3I	CTNAG	8 cut(s)	353, 424, 891, 915, 930, 1056, 1091, 1123
HpySE526I	ACGT	2 cut(s)	946, 970
Hsp92II	CATG	6 cut(s)	665, 714, 851, 857, 875, 1099
HspAI	GCGC	3 cut(s)	1109, 1120, 1356
Kpn2I	TCCGGA	1 cut(s)	281
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
LmnI	GCTCC	1 cut(s)	1141
Lsp1109I	GCAGC	5 cut(s)	1129, 1156, 1234, 1237, 1255
LweI	GCATC	6 cut(s)	298, 535, 928, 935, 1237, 1315
MaeI	CTAG	4 cut(s)	146, 321, 390, 1257
MaeII	ACGT	2 cut(s)	946, 970
MaeIII	GTNAC	3 cut(s)	524, 1340, 1348
MalI	GATC	9 cut(s)	176, 192, 370, 468, 628, 642, 793, 852, 876
MboI	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
MfeI	CAATTG	1 cut(s)	363
MflI	RGATCY	2 cut(s)	190, 626
MluCI	AATT	6 cut(s)	268, 363, 904, 959, 1169, 1295
MlyI	GAGTC	4 cut(s)	211, 521, 725, 1209
MmeI	TCCRAC	1 cut(s)	1155
Mph1103I	ATGCAT	1 cut(s)	928
MroI	TCCGGA	1 cut(s)	281
MseI	TTAA	2 cut(s)	474, 552
MslI	CAYNNNNRTG	2 cut(s)	852, 1323
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	1 cut(s)	282
MunI	CAATTG	1 cut(s)	363
NdeI	CATATG	2 cut(s)	337, 538
NdeII	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
NlaIII	CATG	6 cut(s)	665, 714, 851, 857, 875, 1099
NlaIV	GGNNCC	2 cut(s)	29, 628
NmuCI	GTSAC	2 cut(s)	524, 1340
NsiI	ATGCAT	1 cut(s)	928
NspI	RCATGY	1 cut(s)	665
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PfeI	GAWTC	4 cut(s)	118, 860, 1087, 1289
PkrI	GCNGC	5 cut(s)	1119, 1146, 1224, 1227, 1245
PleI	GAGTC	4 cut(s)	211, 521, 724, 1208
PpsI	GAGTC	4 cut(s)	211, 521, 724, 1208
PshBI	ATTAAT	1 cut(s)	552
Psp1406I	AACGTT	1 cut(s)	970
PspN4I	GGNNCC	2 cut(s)	29, 628
PsuI	RGATCY	2 cut(s)	190, 626
RsaI	GTAC	3 cut(s)	590, 995, 1020
RsaNI	GTAC	3 cut(s)	589, 994, 1019
RseI	CAYNNNNRTG	2 cut(s)	852, 1323
SaqAI	TTAA	2 cut(s)	474, 552
SatI	GCNGC	5 cut(s)	1118, 1145, 1223, 1226, 1244
Sau3AI	GATC	9 cut(s)	174, 190, 368, 466, 626, 640, 791, 850, 874
SchI	GAGTC	4 cut(s)	211, 521, 725, 1209
SfaNI	GCATC	6 cut(s)	298, 535, 928, 935, 1237, 1315
SfcI	CTRYAG	1 cut(s)	831
SfuI	TTCGAA	1 cut(s)	103
SmiMI	CAYNNNNRTG	2 cut(s)	852, 1323
SmlI	CTYRAG	3 cut(s)	579, 1061, 1112
SmoI	CTYRAG	3 cut(s)	579, 1061, 1112
Sse9I	AATT	6 cut(s)	268, 363, 904, 959, 1169, 1295
SsiI	CCGC	1 cut(s)	415
SspMI	CTAG	4 cut(s)	146, 321, 390, 1257
StyI	CCWWGG	3 cut(s)	145, 246, 389
TaaI	ACNGT	2 cut(s)	379, 1277
TaiI	ACGT	2 cut(s)	949, 973
TaqI	TCGA	4 cut(s)	103, 173, 195, 646
TasI	AATT	6 cut(s)	268, 363, 904, 959, 1169, 1295
TatI	WGTACW	3 cut(s)	588, 993, 1018
TfiI	GAWTC	4 cut(s)	118, 860, 1087, 1289
Tru1I	TTAA	2 cut(s)	474, 552
Tru9I	TTAA	2 cut(s)	474, 552
TseFI	GTSAC	2 cut(s)	524, 1340
TseI	GCWGC	5 cut(s)	1117, 1144, 1222, 1225, 1243
Tsp45I	GTSAC	2 cut(s)	524, 1340
TspDTI	ATGAA	5 cut(s)	17, 243, 507, 657, 860
VspI	ATTAAT	1 cut(s)	552
XagI	CCTNNNNNAGG	1 cut(s)	1350
XapI	RAATTY	1 cut(s)	268
XceI	RCATGY	1 cut(s)	665
XmaJI	CCTAGG	2 cut(s)	145, 389
XspI	CTAG	4 cut(s)	146, 321, 390, 1257
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.