Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002105.1

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

169173 .. 176082

Gene Structure 6910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002105.1_g000033.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

atgatcctcgtcgcctcgatgcccgatgatgatccgcgtcgccgtcgtctccggtcacgaaaaccaaacctccttcacttctctgatggtggcgatgtcgaggccttcgaaatccgactgaaactctgtctctgtcagatccgattggcggagcagtacaacaatcagagcaaccatctcggtgccgcgacgctgtcgaagccagcctgtcattcggaccgctacctcctttggcgcggtcaagtggtcatgccttctggtgttacgcgtctcaaggtgatggcatggattgttttgactggctactctgggattggtgttgatgtgttggtggctccgagccccgtggttactgggcagtcaagtatggcaaactccaagagttcatcaaatatgagaaatctgatgtattccggaaagcatcctttgcttcctcccaaaagtccatttcctagtgtttccccatcgtatgcagattatgtctttagtcctgcgataggatcaaaaactattcagaagcctagagagggaaatgcacatcaccagcgaacttcctcagagagtcttcttatagaggagcaaccttcttggcttgatgatctcctaaacgagccggacacacctatacgcagaggaggccaccgtcgttcttcaagcgactcatttgcatatgtagatgcaattaatgtttctaacattgattattctgctcaagatgagtacaaatacaataatatgttttctgcaccctcttggggaactcaagattttgaccctcagacagatttaagacatgcttcattatactccgaactgaacttggtgaagcagaagaataaggcatgggagtcttctgtcagtgccataagtaacccaagaagcctttcttctgtcaaggataacattgttcttcacagttcaggatctttatctactccgcaagaagcagatggggttgtctctacagcaagtgaaaagcaagatcagattgaatctggcccacatgatgctaaagctccctctgagaaaaaggacaattccaatgctaagccatatgcatccgagacagatgcaaaacgcgcaaaacagcaatttgctcaacgttcacgggttcggaaacttcaatacatagctgaactggagagaaatgtgcaagctttacaggcagaagggactgaagtttcggccgagcttgaatttctaaaccagcagaatctaattctgagcatggagaacaaagcactcaagcagcggttagaaaacatagcacaggagcaacttatcaaatactttctgaagcacagggaactgggaagggtgaagctcttcttagaatacatgatgtatcttgtacctattgttatgtcagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

457

Amino Acids

51.23

Weight (kDa)

8.5

Isoelectric Point (pI)

62.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AccII	CGCG	5 cut(s)	37, 188, 237, 268, 1080
AccIII	TCCGGA	1 cut(s)	413
AciI	CCGC	7 cut(s)	35, 149, 186, 220, 237, 938, 1252
AclI	AACGTT	1 cut(s)	1102
AclWI	GGATC	4 cut(s)	26, 133, 508, 931
AcoI	YGGCCR	1 cut(s)	1185
AcsI	RAATTY	1 cut(s)	1196
AcuI	CTGAAG	2 cut(s)	1197, 1316
AfaI	GTAC	3 cut(s)	158, 722, 1353
AfiI	CCNNNNNNNGG	4 cut(s)	148, 497, 527, 755
AflIII	ACRYGT	1 cut(s)	266
AgsI	TTSAA	4 cut(s)	654, 992, 1124, 1196
AjuI	GAANNNNNNNTTGG	2 cut(s)	868, 900
AluBI	AGCT	5 cut(s)	1016, 1133, 1157, 1192, 1324
AluI	AGCT	5 cut(s)	1016, 1133, 1157, 1192, 1324
Alw26I	GTCTC	5 cut(s)	53, 134, 275, 964, 1058
AlwI	GGATC	4 cut(s)	26, 133, 508, 931
Aor13HI	TCCGGA	1 cut(s)	413
AoxI	GGCC	4 cut(s)	102, 637, 997, 1185
ApeKI	GCWGC	1 cut(s)	1249
ApoI	RAATTY	1 cut(s)	1196
ArsI	GACNNNNNNTTYG	2 cut(s)	1165, 1197
AseI	ATTAAT	1 cut(s)	684
Asp700I	GAANNNNTTC	2 cut(s)	883, 1325
AspLEI	GCGC	2 cut(s)	237, 1082
AspS9I	GGNCC	2 cut(s)	217, 998
AsuHPI	GGTGA	4 cut(s)	289, 533, 835, 1330
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	557, 843
BbvI	GCAGC	1 cut(s)	1261
BccI	CCATC	5 cut(s)	80, 183, 274, 472, 944
BceAI	ACGGC	1 cut(s)	27
BcgI	CGANNNNNNTGC	6 cut(s)	160, 194, 647, 681, 1052, 1086
BcoDI	GTCTC	5 cut(s)	53, 134, 275, 964, 1058
BfaI	CTAG	2 cut(s)	453, 522
BfmI	CTRYAG	1 cut(s)	963
BisI	GCNGC	2 cut(s)	186, 1250
BlpI	GCTNAGC	1 cut(s)	1047
BlsI	GCNGC	2 cut(s)	187, 1251
Bme18I	GGWCC	1 cut(s)	217
BmgT120I	GGNCC	2 cut(s)	217, 998
BmiI	GGNNCC	2 cut(s)	184, 336
BmrI	ACTGGG	2 cut(s)	363, 1319
BmsI	GCATC	6 cut(s)	9, 430, 667, 997, 1060, 1067
BmuI	ACTGGG	2 cut(s)	363, 1319
BpiI	GAAGAC	2 cut(s)	557, 843
BpmI	CTGGAG	1 cut(s)	1160
Bpu1102I	GCTNAGC	1 cut(s)	1047
Bpu14I	TTCGAA	1 cut(s)	108
BpuEI	CTTGAG	4 cut(s)	257, 696, 747, 1229
BsaBI	GATNNNNATC	2 cut(s)	30, 928
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	2 cut(s)	51, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	4 cut(s)	148, 497, 527, 755
Bse1I	ACTGG	4 cut(s)	304, 358, 1143, 1314
Bse8I	GATNNNNATC	2 cut(s)	30, 928
BseAI	TCCGGA	1 cut(s)	413
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	421, 1058
BseJI	GATNNNNATC	2 cut(s)	30, 928
BseLI	CCNNNNNNNGG	4 cut(s)	148, 497, 527, 755
BseMII	CTCAG	4 cut(s)	570, 791, 1014, 1214
BseNI	ACTGG	4 cut(s)	304, 358, 1143, 1314
BseRI	GAGGAG	2 cut(s)	590, 648
BseX3I	CGGCCG	1 cut(s)	1185
BseXI	GCAGC	1 cut(s)	1261
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	5 cut(s)	37, 188, 237, 268, 1080
Bsh1285I	CGRYCG	1 cut(s)	1188
BshFI	GGCC	4 cut(s)	104, 639, 999, 1187
BshNI	GGYRCC	1 cut(s)	182
BsiEI	CGRYCG	1 cut(s)	1188
BsiSI	CCGG	3 cut(s)	52, 414, 614
BslFI	GGGAC	1 cut(s)	1186
BslI	CCNNNNNNNGG	4 cut(s)	148, 497, 527, 755
BsmAI	GTCTC	5 cut(s)	53, 134, 275, 964, 1058
BsmBI	CGTCTC	2 cut(s)	53, 275
BsmFI	GGGAC	1 cut(s)	1186
BsnI	GGCC	4 cut(s)	104, 639, 999, 1187
Bsp119I	TTCGAA	1 cut(s)	108
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	413
Bsp143I	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
Bsp1720I	GCTNAGC	1 cut(s)	1047
BspACI	CCGC	7 cut(s)	35, 149, 186, 220, 237, 938, 1252
BspANI	GGCC	4 cut(s)	104, 639, 999, 1187
BspCNI	CTCAG	4 cut(s)	569, 790, 1015, 1215
BspEI	TCCGGA	1 cut(s)	413
BspFNI	CGCG	5 cut(s)	37, 188, 237, 268, 1080
BspLI	GGNNCC	2 cut(s)	184, 336
BspPI	GGATC	4 cut(s)	26, 133, 508, 931
BspQI	GCTCTTC	1 cut(s)	1331
BspT104I	TTCGAA	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	182
BsrI	ACTGG	4 cut(s)	304, 358, 1143, 1314
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
Bst4CI	ACNGT	2 cut(s)	644, 917
Bst6I	CTCTTC	1 cut(s)	1331
BstAPI	GCANNNNNTGC	1 cut(s)	427
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	204, 1155
BstDEI	CTNAG	6 cut(s)	556, 777, 1023, 1047, 1223, 1330
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	421, 1058
BstFNI	CGCG	5 cut(s)	37, 188, 237, 268, 1080
BstHHI	GCGC	2 cut(s)	237, 1082
BstKTI	GATC	7 cut(s)	6, 34, 141, 503, 601, 926, 985
BstMAI	GTCTC	5 cut(s)	53, 134, 275, 964, 1058
BstMBI	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
BstMCI	CGRYCG	1 cut(s)	1188
BstMWI	GCNNNNNNNGC	5 cut(s)	199, 427, 636, 1079, 1163
BstNSI	RCATGY	1 cut(s)	797
BstSFI	CTRYAG	1 cut(s)	963
BstUI	CGCG	5 cut(s)	37, 188, 237, 268, 1080
BstV1I	GCAGC	1 cut(s)	1261
BstV2I	GAAGAC	2 cut(s)	557, 843
BstX2I	RGATCY	2 cut(s)	138, 923
BstYI	RGATCY	2 cut(s)	138, 923
BstZI	CGGCCG	1 cut(s)	1185
BsuRI	GGCC	4 cut(s)	104, 639, 999, 1187
BtgI	CCRYGG	1 cut(s)	345
BtgZI	GCGATG	1 cut(s)	108
BtsCI	GGATG	2 cut(s)	421, 1058
BtsIMutI	CAGTG	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	204, 1155
CfoI	GCGC	2 cut(s)	237, 1082
Cfr13I	GGNCC	2 cut(s)	217, 998
CpoI	CGGWCCG	1 cut(s)	217
CseI	GACGC	3 cut(s)	26, 199, 257
Csp6I	GTAC	3 cut(s)	157, 721, 1352
CspI	CGGWCCG	1 cut(s)	217
CviAII	CATG	7 cut(s)	250, 285, 794, 843, 1004, 1228, 1339
CviQI	GTAC	3 cut(s)	157, 721, 1352
DdeI	CTNAG	6 cut(s)	556, 777, 1023, 1047, 1223, 1330
DpnI	GATC	7 cut(s)	5, 33, 140, 502, 600, 925, 984
DpnII	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
EaeI	YGGCCR	1 cut(s)	1185
EagI	CGGCCG	1 cut(s)	1185
Eam1104I	CTCTTC	1 cut(s)	1331
EarI	CTCTTC	1 cut(s)	1331
EciI	GGCGGA	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	1185
Eco147I	AGGCCT	1 cut(s)	104
Eco24I	GRGCYC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	217
Eco52I	CGGCCG	1 cut(s)	1185
Eco57I	CTGAAG	2 cut(s)	1197, 1316
EcoNI	CCTNNNNNAGG	1 cut(s)	495
EcoT22I	ATGCAT	1 cut(s)	1060
EcoT38I	GRGCYC	1 cut(s)	344
Esp3I	CGTCTC	2 cut(s)	53, 275
FaeI	CATG	7 cut(s)	253, 288, 797, 846, 1007, 1231, 1342
FalI	AAGNNNNNCTT	6 cut(s)	781, 813, 871, 903, 1313, 1345
FaqI	GGGAC	1 cut(s)	1186
FatI	CATG	7 cut(s)	249, 284, 793, 842, 1003, 1227, 1338
FauNDI	CATATG	2 cut(s)	670, 1054
Fnu4HI	GCNGC	2 cut(s)	186, 1250
FokI	GGATG	2 cut(s)	408, 1045
FriOI	GRGCYC	1 cut(s)	344
Fsp4HI	GCNGC	2 cut(s)	186, 1250
FspBI	CTAG	2 cut(s)	453, 522
GlaI	GCGC	2 cut(s)	236, 1081
GluI	GCNGC	2 cut(s)	186, 1250
GsuI	CTGGAG	1 cut(s)	1160
HaeIII	GGCC	4 cut(s)	104, 639, 999, 1187
HapII	CCGG	3 cut(s)	52, 414, 614
HgaI	GACGC	3 cut(s)	26, 199, 257
HhaI	GCGC	2 cut(s)	237, 1082
Hin1II	CATG	7 cut(s)	253, 288, 797, 846, 1007, 1231, 1342
Hin6I	GCGC	2 cut(s)	235, 1080
HinP1I	GCGC	2 cut(s)	235, 1080
HindIII	AAGCTT	1 cut(s)	1155
HinfI	GANTC	5 cut(s)	562, 659, 848, 992, 1213
HpaII	CCGG	3 cut(s)	52, 414, 614
HphI	GGTGA	4 cut(s)	289, 533, 835, 1330
Hpy166II	GTNNAC	1 cut(s)	1106
Hpy188III	TCNNGA	5 cut(s)	57, 414, 713, 764, 921
Hpy8I	GTNNAC	1 cut(s)	1106
Hpy99I	CGWCG	5 cut(s)	14, 42, 48, 193, 648
HpyAV	CCTTC	6 cut(s)	83, 115, 264, 594, 1163, 1308
HpyCH4III	ACNGT	2 cut(s)	644, 917
HpyCH4IV	ACGT	1 cut(s)	1102
HpyCH4V	TGCA	8 cut(s)	473, 536, 668, 680, 746, 1058, 1073, 1153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	199, 427, 636, 1079, 1163
HpyF3I	CTNAG	6 cut(s)	556, 777, 1023, 1047, 1223, 1330
HpySE526I	ACGT	1 cut(s)	1102
Hsp92II	CATG	7 cut(s)	253, 288, 797, 846, 1007, 1231, 1342
HspAI	GCGC	2 cut(s)	235, 1080
Kpn2I	TCCGGA	1 cut(s)	413
Kzo9I	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
LguI	GCTCTTC	1 cut(s)	1331
LmnI	GCTCC	5 cut(s)	151, 340, 577, 1021, 1273
Lsp1109I	GCAGC	1 cut(s)	1261
LweI	GCATC	6 cut(s)	9, 430, 667, 997, 1060, 1067
MaeI	CTAG	2 cut(s)	453, 522
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	4 cut(s)	54, 262, 349, 869
MalI	GATC	7 cut(s)	5, 33, 140, 502, 600, 925, 984
MboI	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
MboII	GAAGA	7 cut(s)	557, 642, 843, 844, 879, 902, 1318
MflI	RGATCY	2 cut(s)	138, 923
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	5 cut(s)	681, 1036, 1091, 1196, 1218
MluI	ACGCGT	1 cut(s)	266
MlyI	GAGTC	3 cut(s)	571, 653, 857
MmeI	TCCRAC	1 cut(s)	139
Mph1103I	ATGCAT	1 cut(s)	1060
MroI	TCCGGA	1 cut(s)	413
MroXI	GAANNNNTTC	2 cut(s)	883, 1325
MseI	TTAA	2 cut(s)	684, 788
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	1 cut(s)	1252
MspI	CCGG	3 cut(s)	52, 414, 614
MvnI	CGCG	5 cut(s)	37, 188, 237, 268, 1080
MwoI	GCNNNNNNNGC	5 cut(s)	199, 427, 636, 1079, 1163
NdeI	CATATG	2 cut(s)	670, 1054
NdeII	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
NlaIII	CATG	7 cut(s)	253, 288, 797, 846, 1007, 1231, 1342
NlaIV	GGNNCC	2 cut(s)	184, 336
NmeAIII	GCCGAG	1 cut(s)	1213
NmuCI	GTSAC	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	1 cut(s)	797
NspV	TTCGAA	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	1331
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	883, 1325
PfeI	GAWTC	2 cut(s)	992, 1213
PflFI	GACNNNGTC	1 cut(s)	193
PkrI	GCNGC	2 cut(s)	187, 1251
PleI	GAGTC	3 cut(s)	570, 653, 856
PpsI	GAGTC	3 cut(s)	570, 653, 856
PshBI	ATTAAT	1 cut(s)	684
Psp1406I	AACGTT	1 cut(s)	1102
PspN4I	GGNNCC	2 cut(s)	184, 336
PspPI	GGNCC	2 cut(s)	217, 998
PsuI	RGATCY	2 cut(s)	138, 923
PsyI	GACNNNGTC	1 cut(s)	193
RsaI	GTAC	3 cut(s)	158, 722, 1353
RsaNI	GTAC	3 cut(s)	157, 721, 1352
RseI	CAYNNNNRTG	1 cut(s)	180
Rsr2I	CGGWCCG	1 cut(s)	217
RsrII	CGGWCCG	1 cut(s)	217
SapI	GCTCTTC	1 cut(s)	1331
SaqAI	TTAA	2 cut(s)	684, 788
SatI	GCNGC	2 cut(s)	186, 1250
Sau3AI	GATC	7 cut(s)	3, 31, 138, 500, 598, 923, 982
Sau96I	GGNCC	2 cut(s)	217, 998
SchI	GAGTC	3 cut(s)	571, 653, 857
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	6 cut(s)	9, 430, 667, 997, 1060, 1067
SfcI	CTRYAG	1 cut(s)	963
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	4 cut(s)	272, 711, 762, 1244
SmoI	CTYRAG	4 cut(s)	272, 711, 762, 1244
Sse9I	AATT	5 cut(s)	681, 1036, 1091, 1196, 1218
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	7 cut(s)	35, 149, 186, 220, 237, 938, 1252
SspMI	CTAG	2 cut(s)	453, 522
StuI	AGGCCT	1 cut(s)	104
TaaI	ACNGT	2 cut(s)	644, 917
TaiI	ACGT	1 cut(s)	1105
TaqI	TCGA	4 cut(s)	17, 99, 108, 197
TasI	AATT	5 cut(s)	681, 1036, 1091, 1196, 1218
TatI	WGTACW	2 cut(s)	156, 720
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	992, 1213
Tru1I	TTAA	2 cut(s)	684, 788
Tru9I	TTAA	2 cut(s)	684, 788
TscAI	CASTG	1 cut(s)	865
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	1249
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	2 cut(s)	375, 789
TspRI	CASTG	1 cut(s)	865
Tth111I	GACNNNGTC	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	217
VspI	ATTAAT	1 cut(s)	684
XagI	CCTNNNNNAGG	1 cut(s)	495
XapI	RAATTY	1 cut(s)	1196
XceI	RCATGY	1 cut(s)	797
XmnI	GAANNNNTTC	2 cut(s)	883, 1325
XspI	CTAG	2 cut(s)	453, 522
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.