Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

46898059 .. 46904938

Gene Structure 6880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G575800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCAAACTCCAAGAGTTCAAATATCAGAAATTTCATGTATTCCGGAAAGCATCCTTTGCTTCCTCCGAAAAGTCCATTTCCTAGCGTTTCCCCGTCTTATGCAGATTATGTCCTCAGTCCTGCATTTGGATCAAAAACTGTTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCGGAGAGCCTTCTTATAGAGGAACAACCTTCTTGGCTTGATGATCTCCTTAATGAGCCGGACACACCAATACGCAGAGGAGGTCATCGTCGTTCATCAAGTGACTCATTTGCATATGTGGATACATCTAATGCTTCTAACATTGATTACGCAGCTCAAGATGAGTACAAATATCATCATATGATTTCTGCACCCTCTTGGGGATCTCACGACTTTGATCCCCAAAAAGATTTACGACATGCTTCATTATACACTGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTTTGAATAGTGTAAATAACATGAGCAGCCTTCCTTCTGTCAAGGATAACATTGTTCTTCAGAGTTCAGGATCATTATCTACACCACAAGAAGCAGATGGGTTTGCTTCTACTGCAAGTGAAAAGCAGGATCAGGTTGAATCTGGTCCACATGATCCAAAGGCTTCTTCTGAGAAAAAAGACAATTCTAATGCTAAGCTTTATGCATCTGAGACGGATGCAAAACGTGCTAAACAGCAATTTGCTCAACGCTCACGGGTTCGAAAACTTCAATACATAGCTGAGCTGGAGAGGAATGTACAGGCTTTACAGGCAGAAGGGTCTGGAGTTACAGCCGAGCTGGAATTTCTCAACCAGCAGAATCTGATTCTGAGCATGGAGAACAAAGCCCTCAAGCAGCGCTTAGAAAGTATTGCACAGGAGCAACTTATCAAATACTTGGAGCAAGAATTATTAGAGAGAGAGATCGGAAGGCTACGAGCCTTGTATCAGCAACAACAGCAGCACCATCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAGCAACAACCTTCTTCTAGCCATAGACGCTCTAATAGCAAAGACCTTGATTCCCAATTTGCGAACCTCTCTTTGAAACACAAGGATGCAAATGCAGGTCGTGACCCTGTAACAGGCACACTTCGCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

43.97

Weight (kDa)

7.25

Isoelectric Point (pI)

72.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1124
AccIII	TCCGGA	1 cut(s)	44
AclWI	GGATC	6 cut(s)	139, 397, 398, 562, 621, 632
AcsI	RAATTY	2 cut(s)	31, 827
AcuI	CTGAAG	1 cut(s)	527
AfaI	GTAC	2 cut(s)	353, 783
AfeI	AGCGCT	1 cut(s)	884
AfiI	CCNNNNNNNGG	4 cut(s)	128, 158, 386, 1151
AgsI	TTSAA	5 cut(s)	21, 490, 623, 755, 1114
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	5 cut(s)	341, 682, 764, 769, 823
AluI	AGCT	5 cut(s)	341, 682, 764, 769, 823
Alw26I	GTCTC	1 cut(s)	689
AlwI	GGATC	6 cut(s)	139, 397, 398, 562, 621, 632
AlwNI	CAGNNNCTG	1 cut(s)	847
Aor13HI	TCCGGA	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	884
ApeKI	GCWGC	5 cut(s)	338, 510, 880, 985, 997
ApoI	RAATTY	2 cut(s)	31, 827
AspLEI	GCGC	1 cut(s)	885
AspS9I	GGNCC	1 cut(s)	629
AsuHPI	GGTGA	2 cut(s)	164, 466
AsuII	TTCGAA	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	629
BbsI	GAAGAC	1 cut(s)	474
BbvI	GCAGC	5 cut(s)	350, 522, 892, 997, 1009
BccI	CCATC	2 cut(s)	575, 999
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	689
BfaI	CTAG	3 cut(s)	84, 153, 1056
BfoI	RGCGCY	1 cut(s)	886
BfuAI	ACCTGC	1 cut(s)	1124
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	5 cut(s)	339, 511, 881, 986, 998
BlpI	GCTNAGC	2 cut(s)	678, 765
BlsI	GCNGC	5 cut(s)	340, 512, 882, 987, 999
Bme18I	GGWCC	1 cut(s)	629
BmgT120I	GGNCC	1 cut(s)	629
BmsI	GCATC	4 cut(s)	61, 691, 698, 1114
BpiI	GAAGAC	1 cut(s)	474
BpmI	CTGGAG	2 cut(s)	791, 828
Bpu1102I	GCTNAGC	2 cut(s)	678, 765
Bpu14I	TTCGAA	1 cut(s)	745
BpuEI	CTTGAG	2 cut(s)	327, 860
BsaBI	GATNNNNATC	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 158, 386, 1151
Bse8I	GATNNNNATC	1 cut(s)	559
BseAI	TCCGGA	1 cut(s)	44
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	3 cut(s)	52, 706, 1129
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	4 cut(s)	128, 158, 386, 1151
BseMII	CTCAG	5 cut(s)	130, 645, 684, 756, 845
BseRI	GAGGAG	1 cut(s)	279
BseXI	GCAGC	5 cut(s)	350, 522, 892, 997, 1009
BsgI	GTGCAG	1 cut(s)	360
BsiSI	CCGG	2 cut(s)	45, 245
BslI	CCNNNNNNNGG	4 cut(s)	128, 158, 386, 1151
BsmAI	GTCTC	1 cut(s)	689
BsmBI	CGTCTC	1 cut(s)	689
Bsp119I	TTCGAA	1 cut(s)	745
Bsp13I	TCCGGA	1 cut(s)	44
Bsp1407I	TGTACA	1 cut(s)	781
Bsp143I	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
Bsp1720I	GCTNAGC	2 cut(s)	678, 765
BspCNI	CTCAG	5 cut(s)	129, 646, 685, 757, 846
BspEI	TCCGGA	1 cut(s)	44
BspMI	ACCTGC	1 cut(s)	1124
BspPI	GGATC	6 cut(s)	139, 397, 398, 562, 621, 632
BspT104I	TTCGAA	1 cut(s)	745
BsrGI	TGTACA	1 cut(s)	781
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
Bst4CI	ACNGT	1 cut(s)	142
BstAPI	GCANNNNNTGC	2 cut(s)	58, 710
BstAUI	TGTACA	1 cut(s)	781
BstBI	TTCGAA	1 cut(s)	745
BstDEI	CTNAG	7 cut(s)	116, 654, 678, 693, 765, 854, 886
BstENI	CCTNNNNNAGG	1 cut(s)	1149
BstF5I	GGATG	3 cut(s)	52, 706, 1129
BstH2I	RGCGCY	1 cut(s)	886
BstHHI	GCGC	1 cut(s)	885
BstKTI	GATC	8 cut(s)	134, 232, 392, 406, 557, 616, 640, 951
BstMAI	GTCTC	1 cut(s)	689
BstMBI	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
BstNSI	RCATGY	1 cut(s)	428
BstV1I	GCAGC	5 cut(s)	350, 522, 892, 997, 1009
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuI	GTATCC	1 cut(s)	301
BtsCI	GGATG	3 cut(s)	52, 706, 1129
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	1124
CaiI	CAGNNNCTG	1 cut(s)	847
CfoI	GCGC	1 cut(s)	885
Cfr13I	GGNCC	1 cut(s)	629
CseI	GACGC	1 cut(s)	1074
Csp6I	GTAC	2 cut(s)	352, 782
CviAII	CATG	6 cut(s)	37, 425, 474, 505, 635, 859
CviQI	GTAC	2 cut(s)	352, 782
DdeI	CTNAG	7 cut(s)	116, 654, 678, 693, 765, 854, 886
DpnI	GATC	8 cut(s)	133, 231, 391, 405, 556, 615, 639, 950
DpnII	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
Eco47I	GGWCC	1 cut(s)	629
Eco47III	AGCGCT	1 cut(s)	884
Eco57I	CTGAAG	1 cut(s)	527
EcoNI	CCTNNNNNAGG	1 cut(s)	1149
EcoT22I	ATGCAT	1 cut(s)	691
Esp3I	CGTCTC	1 cut(s)	689
FaeI	CATG	6 cut(s)	40, 428, 477, 508, 638, 862
FalI	AAGNNNNNCTT	2 cut(s)	869, 901
FatI	CATG	6 cut(s)	36, 424, 473, 504, 634, 858
FauNDI	CATATG	2 cut(s)	301, 366
Fnu4HI	GCNGC	5 cut(s)	339, 511, 881, 986, 998
FokI	GGATG	3 cut(s)	39, 713, 1136
Fsp4HI	GCNGC	5 cut(s)	339, 511, 881, 986, 998
FspBI	CTAG	3 cut(s)	84, 153, 1056
GlaI	GCGC	1 cut(s)	884
GluI	GCNGC	5 cut(s)	339, 511, 881, 986, 998
GsuI	CTGGAG	2 cut(s)	791, 828
HaeII	RGCGCY	1 cut(s)	886
HapII	CCGG	2 cut(s)	45, 245
HgaI	GACGC	1 cut(s)	1074
HhaI	GCGC	1 cut(s)	885
Hin1II	CATG	6 cut(s)	40, 428, 477, 508, 638, 862
Hin6I	GCGC	1 cut(s)	883
HinP1I	GCGC	1 cut(s)	883
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	6 cut(s)	290, 479, 623, 844, 850, 1088
HpaII	CCGG	2 cut(s)	45, 245
HphI	GGTGA	2 cut(s)	164, 466
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188III	TCNNGA	6 cut(s)	45, 344, 395, 552, 807, 1139
Hpy8I	GTNNAC	1 cut(s)	632
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	7 cut(s)	206, 225, 524, 528, 794, 948, 1059
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	709
HpyF3I	CTNAG	7 cut(s)	116, 654, 678, 693, 765, 854, 886
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	6 cut(s)	40, 428, 477, 508, 638, 862
HspAI	GCGC	1 cut(s)	883
Kpn2I	TCCGGA	1 cut(s)	44
Kzo9I	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
LmnI	GCTCC	2 cut(s)	904, 925
Lsp1109I	GCAGC	5 cut(s)	350, 522, 892, 997, 1009
LweI	GCATC	4 cut(s)	61, 691, 698, 1114
MaeI	CTAG	3 cut(s)	84, 153, 1056
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	4 cut(s)	287, 811, 1139, 1147
MalI	GATC	8 cut(s)	133, 231, 391, 405, 556, 615, 639, 950
MboI	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
MboII	GAAGA	5 cut(s)	474, 475, 533, 642, 1044
MflI	RGATCY	1 cut(s)	389
MluCI	AATT	6 cut(s)	31, 667, 722, 827, 932, 1094
MlyI	GAGTC	2 cut(s)	284, 488
Mph1103I	ATGCAT	1 cut(s)	691
MroI	TCCGGA	1 cut(s)	44
MseI	TTAA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	1122
MspI	CCGG	2 cut(s)	45, 245
NdeI	CATATG	2 cut(s)	301, 366
NdeII	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
NlaIII	CATG	6 cut(s)	40, 428, 477, 508, 638, 862
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	2 cut(s)	287, 1139
NsiI	ATGCAT	1 cut(s)	691
NspI	RCATGY	1 cut(s)	428
NspV	TTCGAA	1 cut(s)	745
PfeI	GAWTC	4 cut(s)	623, 844, 850, 1088
PkrI	GCNGC	5 cut(s)	340, 512, 882, 987, 999
PleI	GAGTC	2 cut(s)	284, 487
PpsI	GAGTC	2 cut(s)	284, 487
PspPI	GGNCC	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	2 cut(s)	353, 783
RsaNI	GTAC	2 cut(s)	352, 782
RseI	CAYNNNNRTG	1 cut(s)	1122
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	5 cut(s)	339, 511, 881, 986, 998
Sau3AI	GATC	8 cut(s)	131, 229, 389, 403, 554, 613, 637, 948
Sau96I	GGNCC	1 cut(s)	629
SchI	GAGTC	2 cut(s)	284, 488
SfaNI	GCATC	4 cut(s)	61, 691, 698, 1114
SfuI	TTCGAA	1 cut(s)	745
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	1 cut(s)	1122
SmlI	CTYRAG	2 cut(s)	342, 875
SmoI	CTYRAG	2 cut(s)	342, 875
Sse9I	AATT	6 cut(s)	31, 667, 722, 827, 932, 1094
SspMI	CTAG	3 cut(s)	84, 153, 1056
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	745
TasI	AATT	6 cut(s)	31, 667, 722, 827, 932, 1094
TatI	WGTACW	2 cut(s)	351, 781
TfiI	GAWTC	4 cut(s)	623, 844, 850, 1088
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	445
TseFI	GTSAC	2 cut(s)	287, 1139
TseI	GCWGC	5 cut(s)	338, 510, 880, 985, 997
Tsp45I	GTSAC	2 cut(s)	287, 1139
TspDTI	ATGAA	3 cut(s)	25, 270, 420
TspGWI	ACGGA	1 cut(s)	713
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	1 cut(s)	629
XagI	CCTNNNNNAGG	1 cut(s)	1149
XapI	RAATTY	2 cut(s)	31, 827
XceI	RCATGY	1 cut(s)	428
XspI	CTAG	3 cut(s)	84, 153, 1056
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.