Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Forward (+)

27303418 .. 27309207

Gene Structure 5790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00238900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCAAACTCCAAGAGTTCATCAAACATGAGAAATCTGATGTATTCCGGAAAGCATCCTTTGCTTCCTCCTAAAAGTCCATTTCCTAGTGTTTCCCCATCGTATGCAGATTATGTCTTTAGTCCTGCGATAGGATCGAAAACTATTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCAGAGAGTCTTCTTATAGAGGAGCAACCTTCTTGGCTTGATGATCTCCTAAACGAGCCGGACACACCTATACGCAGAGGAGGCCATCGTCGTTCTTCAAGCGACTCATTTGCATATGTAGATGCAATTAATGTTTCTAACATTGATTATACTGCTCAAGATGAGTACAAATACAATAATATGTTTTCTGCGCCCTCTTGGGGAACTCAAGATTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACTCCGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTGTGAGTGCCATAAGTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAACATTGTTCTTCACAGTTCAGGATCTTTATCTACTCCGCAAGAAGCAGATGGGGTTGTCTCTACAGCAAGTGAAAAGCAAGATCAGATTGAATCTGGCCCACATGATGCTAAAGCTCCCTCTGAGAAAAAGGACAATTCCAATGCTAAGCCATATGCGTCTGAGACAGATGCAAAACGCGCAAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCTGAACTGGAGAGAAATGTGCAAGCTTTACAGGCAAAAGGGACTGGAGTTTCGGCCGAGCTTGAATTTCTAAACCAGCAGAATCTAATTCTGAGCATGGAGAACAAAGCTCTCAAGCAGCGGTTAGAAAATATAGCACAGGAGCAACTTATCAAATACTTGGAGCAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGCATTGTATCAGCAACAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAGCAACAACAGCAACAGCAACAGCAACAGCAGCGACCTTCTTCTAGCCATAGACGTAACAACAGCAGAGACCTTGATTCTCAATTTGCAAACCTCTCTTTGAAACACAAGGATGCAAATGCGGGCCGTGACCCTGTCACAGGTGCACTTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

390

Amino Acids

44.05

Weight (kDa)

8.77

Isoelectric Point (pI)

71.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	714
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	3 cut(s)	572, 886, 1136
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	2 cut(s)	142, 565
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	1 cut(s)	830
AfaI	GTAC	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1154
AgsI	TTSAA	5 cut(s)	288, 626, 758, 830, 1117
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	5 cut(s)	650, 767, 791, 826, 875
AluI	AGCT	5 cut(s)	650, 767, 791, 826, 875
Alw21I	GWGCWC	1 cut(s)	1162
Alw26I	GTCTC	3 cut(s)	598, 692, 1077
Alw44I	GTGCAC	1 cut(s)	1158
AlwI	GGATC	2 cut(s)	142, 565
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	4 cut(s)	271, 631, 819, 1138
ApaLI	GTGCAC	1 cut(s)	1158
ApeKI	GCWGC	5 cut(s)	883, 985, 988, 1015, 1045
ApoI	RAATTY	1 cut(s)	830
ArsI	GACNNNNNNTTYG	2 cut(s)	799, 831
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	2 cut(s)	382, 716
AspS9I	GGNCC	2 cut(s)	632, 1138
AsuHPI	GGTGA	2 cut(s)	167, 469
BaeGI	GKGCMC	1 cut(s)	1162
BbsI	GAAGAC	2 cut(s)	191, 477
Bbv12I	GWGCWC	1 cut(s)	1162
BbvI	GCAGC	5 cut(s)	895, 997, 1000, 1027, 1057
BccI	CCATC	3 cut(s)	106, 282, 578
BceAI	ACGGC	1 cut(s)	1125
BcgI	CGANNNNNNTGC	2 cut(s)	281, 315
BcoDI	GTCTC	3 cut(s)	598, 692, 1077
BfaI	CTAG	3 cut(s)	87, 156, 1059
BfmI	CTRYAG	1 cut(s)	597
BisI	GCNGC	5 cut(s)	884, 986, 989, 1016, 1046
BlpI	GCTNAGC	1 cut(s)	681
BlsI	GCNGC	5 cut(s)	885, 987, 990, 1017, 1047
BmgT120I	GGNCC	2 cut(s)	632, 1138
BmsI	GCATC	5 cut(s)	64, 301, 631, 694, 1117
BpiI	GAAGAC	2 cut(s)	191, 477
BpmI	CTGGAG	2 cut(s)	794, 831
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	3 cut(s)	330, 381, 863
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	1077
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1154
Bse1I	ACTGG	2 cut(s)	777, 814
Bse8I	GATNNNNATC	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	47
BseGI	GGATG	2 cut(s)	55, 1132
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1154
BseMII	CTCAG	5 cut(s)	204, 425, 648, 687, 848
BseNI	ACTGG	2 cut(s)	777, 814
BseRI	GAGGAG	2 cut(s)	224, 282
BseSI	GKGCMC	1 cut(s)	1162
BseX3I	CGGCCG	1 cut(s)	819
BseXI	GCAGC	5 cut(s)	895, 997, 1000, 1027, 1057
Bsh1236I	CGCG	1 cut(s)	714
Bsh1285I	CGRYCG	1 cut(s)	822
BshFI	GGCC	4 cut(s)	273, 633, 821, 1140
BsiEI	CGRYCG	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	1162
BsiSI	CCGG	2 cut(s)	48, 248
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1154
BsmAI	GTCTC	3 cut(s)	598, 692, 1077
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	4 cut(s)	273, 633, 821, 1140
Bso31I	GGTCTC	1 cut(s)	1077
Bsp1286I	GDGCHC	1 cut(s)	1162
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	134, 232, 557, 616
Bsp1720I	GCTNAGC	1 cut(s)	681
BspACI	CCGC	3 cut(s)	572, 886, 1136
BspANI	GGCC	4 cut(s)	273, 633, 821, 1140
BspCNI	CTCAG	5 cut(s)	203, 424, 649, 688, 849
BspEI	TCCGGA	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	714
BspPI	GGATC	2 cut(s)	142, 565
BspTNI	GGTCTC	1 cut(s)	1077
BsrI	ACTGG	2 cut(s)	777, 814
BssMI	GATC	4 cut(s)	134, 232, 557, 616
Bst4CI	ACNGT	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	789, 1138
BstDEI	CTNAG	6 cut(s)	190, 411, 657, 681, 696, 857
BstENI	CCTNNNNNAGG	2 cut(s)	129, 1152
BstF5I	GGATG	2 cut(s)	55, 1132
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	2 cut(s)	382, 716
BstKTI	GATC	4 cut(s)	137, 235, 560, 619
BstMAI	GTCTC	3 cut(s)	598, 692, 1077
BstMBI	GATC	4 cut(s)	134, 232, 557, 616
BstMCI	CGRYCG	1 cut(s)	822
BstMWI	GCNNNNNNNGC	9 cut(s)	61, 270, 713, 797, 985, 994, 1015, 1024, 1045
BstNSI	RCATGY	1 cut(s)	431
BstSFI	CTRYAG	1 cut(s)	597
BstSLI	GKGCMC	1 cut(s)	1162
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	5 cut(s)	895, 997, 1000, 1027, 1057
BstV2I	GAAGAC	2 cut(s)	191, 477
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BstZI	CGGCCG	1 cut(s)	819
BsuRI	GGCC	4 cut(s)	273, 633, 821, 1140
BtsCI	GGATG	2 cut(s)	55, 1132
Cac8I	GCNNGC	2 cut(s)	789, 1138
CfoI	GCGC	2 cut(s)	382, 716
Cfr13I	GGNCC	2 cut(s)	632, 1138
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	5 cut(s)	28, 428, 477, 638, 862
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	6 cut(s)	190, 411, 657, 681, 696, 857
DpnI	GATC	4 cut(s)	136, 234, 559, 618
DpnII	GATC	4 cut(s)	134, 232, 557, 616
EaeI	YGGCCR	1 cut(s)	819
EagI	CGGCCG	1 cut(s)	819
EclXI	CGGCCG	1 cut(s)	819
Eco31I	GGTCTC	1 cut(s)	1077
Eco52I	CGGCCG	1 cut(s)	819
EcoNI	CCTNNNNNAGG	2 cut(s)	129, 1152
FaeI	CATG	5 cut(s)	31, 431, 480, 641, 865
FalI	AAGNNNNNCTT	4 cut(s)	415, 447, 505, 537
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	5 cut(s)	27, 427, 476, 637, 861
FauI	CCCGC	1 cut(s)	1129
FauNDI	CATATG	2 cut(s)	304, 688
Fnu4HI	GCNGC	5 cut(s)	884, 986, 989, 1016, 1046
FokI	GGATG	2 cut(s)	42, 1139
Fsp4HI	GCNGC	5 cut(s)	884, 986, 989, 1016, 1046
FspBI	CTAG	3 cut(s)	87, 156, 1059
GlaI	GCGC	2 cut(s)	381, 715
GluI	GCNGC	5 cut(s)	884, 986, 989, 1016, 1046
GsuI	CTGGAG	2 cut(s)	794, 831
HaeIII	GGCC	4 cut(s)	273, 633, 821, 1140
HapII	CCGG	2 cut(s)	48, 248
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	2 cut(s)	382, 716
Hin1II	CATG	5 cut(s)	31, 431, 480, 641, 865
Hin6I	GCGC	2 cut(s)	380, 714
HinP1I	GCGC	2 cut(s)	380, 714
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	196, 293, 482, 626, 847, 1091
HpaII	CCGG	2 cut(s)	48, 248
HphI	GGTGA	2 cut(s)	167, 469
Hpy166II	GTNNAC	2 cut(s)	740, 1160
Hpy188III	TCNNGA	4 cut(s)	48, 347, 398, 555
Hpy8I	GTNNAC	2 cut(s)	740, 1160
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	2 cut(s)	228, 1062
HpyCH4III	ACNGT	1 cut(s)	551
HpyCH4IV	ACGT	2 cut(s)	736, 1069
HpyCH4V	TGCA	9 cut(s)	107, 170, 302, 314, 707, 787, 1103, 1130, 1160
HpyF10VI	GCNNNNNNNGC	9 cut(s)	61, 270, 713, 797, 985, 994, 1015, 1024, 1045
HpyF3I	CTNAG	6 cut(s)	190, 411, 657, 681, 696, 857
HpySE526I	ACGT	2 cut(s)	736, 1069
Hsp92II	CATG	5 cut(s)	31, 431, 480, 641, 865
HspAI	GCGC	2 cut(s)	380, 714
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	134, 232, 557, 616
LmnI	GCTCC	4 cut(s)	211, 655, 907, 928
Lsp1109I	GCAGC	5 cut(s)	895, 997, 1000, 1027, 1057
LweI	GCATC	5 cut(s)	64, 301, 631, 694, 1117
MaeI	CTAG	3 cut(s)	87, 156, 1059
MaeII	ACGT	2 cut(s)	736, 1069
MaeIII	GTNAC	4 cut(s)	503, 1070, 1142, 1150
MalI	GATC	4 cut(s)	136, 234, 559, 618
MboI	GATC	4 cut(s)	134, 232, 557, 616
MboII	GAAGA	7 cut(s)	191, 276, 477, 478, 513, 536, 1047
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	1162
MluCI	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1097
MlyI	GAGTC	3 cut(s)	205, 287, 491
MmeI	TCCRAC	1 cut(s)	921
MroI	TCCGGA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	2 cut(s)	318, 422
MslI	CAYNNNNRTG	1 cut(s)	1125
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	2 cut(s)	48, 248
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	9 cut(s)	61, 270, 713, 797, 985, 994, 1015, 1024, 1045
NdeI	CATATG	2 cut(s)	304, 688
NdeII	GATC	4 cut(s)	134, 232, 557, 616
NlaIII	CATG	5 cut(s)	31, 431, 480, 641, 865
NmeAIII	GCCGAG	1 cut(s)	847
NmuCI	GTSAC	2 cut(s)	1142, 1150
NspI	RCATGY	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	626, 847, 1091
PflFI	GACNNNGTC	1 cut(s)	1148
PkrI	GCNGC	5 cut(s)	885, 987, 990, 1017, 1047
PleI	GAGTC	3 cut(s)	204, 287, 490
PpsI	GAGTC	3 cut(s)	204, 287, 490
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	632, 1138
PsuI	RGATCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	1148
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
RseI	CAYNNNNRTG	1 cut(s)	1125
SaqAI	TTAA	2 cut(s)	318, 422
SatI	GCNGC	5 cut(s)	884, 986, 989, 1016, 1046
Sau3AI	GATC	4 cut(s)	134, 232, 557, 616
Sau96I	GGNCC	2 cut(s)	632, 1138
SchI	GAGTC	3 cut(s)	205, 287, 491
SduI	GDGCHC	1 cut(s)	1162
SfaNI	GCATC	5 cut(s)	64, 301, 631, 694, 1117
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	3 cut(s)	345, 396, 878
SmoI	CTYRAG	3 cut(s)	345, 396, 878
Sse9I	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1097
SsiI	CCGC	3 cut(s)	572, 886, 1136
SspMI	CTAG	3 cut(s)	87, 156, 1059
TaaI	ACNGT	1 cut(s)	551
TaiI	ACGT	2 cut(s)	739, 1072
TaqI	TCGA	1 cut(s)	137
TasI	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1097
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	626, 847, 1091
Tru1I	TTAA	2 cut(s)	318, 422
Tru9I	TTAA	2 cut(s)	318, 422
TseFI	GTSAC	2 cut(s)	1142, 1150
TseI	GCWGC	5 cut(s)	883, 985, 988, 1015, 1045
Tsp45I	GTSAC	2 cut(s)	1142, 1150
TspDTI	ATGAA	2 cut(s)	9, 423
Tth111I	GACNNNGTC	1 cut(s)	1148
VneI	GTGCAC	1 cut(s)	1158
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	2 cut(s)	129, 1152
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	3 cut(s)	87, 156, 1059

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.