Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Reverse (-)

19887657 .. 19893101

Gene Structure 5445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAAACTCCAAGAGTTCATCAAATATGAGAAATCTGATGTATTCCGGAAAGCATCCTTTGCTTCCTCCCAAAAGTCCATTTCCTAGTGTTTCCCCATCATATGCAGATTATGTCTTTAGTCCTGCAATAGGATCAAAAACTATTCAGAAGCCTAGAGAGGGAAATGCACACCACCAACGGACTTCCTCAGAGAGTCTTCCTATAGAGGAGCAACCGTCTTGGCTTGATGATCTCCTTAACGAGCCAGACACACCTATACGCAGAGGCGGCCATCGTCGTTCTTCAAGTGACTCCTTTGCATATGTAGATGCAATTAATGTTTCCAACATCGAGTTTGCTGCTCAAGAAGAGTACAAATATAATAATATGTTTTCTGCACCCTCCTGGGGTACTCAAGACTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACACTGAACTGAACTTGGTGAAGCAGAAGAACAAGGCTTGGGAGTCTTCTGTGGGTGCCATTACTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAACATTGTTCTTCATAGTTCAGGATCTTTATCTAATCCACAAGAAGCAGATGGGGTTGTCTCTACAGCCAGTGAAAAGCAAGATCAGATTGAATCTGGACCACATGATGCTAAAGCTTCCTCTGAGAAAAAGGACAATTCCAATGCTAAACCATATGCATCCGAGACAGATGCAAAACGCGCAAAGCAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCTGAGCTGGAGAGAAATGTGCAAGCTTTACAGGCAAAAGGGACTGAAGTTTCAGCTGAGCTTGAATTTTTAAACCAGCAGAATCTAATTCTGAGCATGGAGAACAAAGCTCTCAAGCAGCGATTAGAAAACATAGCACAGGAGCAACTTATTAAATATTTGGAGCAAGAATTGTTGGAGAGGGAGATTGGGAGGCTAAGAGCATTGTATCAGCAGCAGCAACAACAGCACCAACAGCAACAGCAGCGACCTTCTTCTAGTCATAGACGTAATAACAGCAGAGACCTTGATTCTCAATTTGCTAACCTCTCTTTGAAACACAAGGATGCAAATGCAGGCCGTGACCCTGTCACTGGTGCACTTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

42.56

Weight (kDa)

8.49

Isoelectric Point (pI)

67.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	494
AccII	CGCG	1 cut(s)	714
AccIII	TCCGGA	1 cut(s)	47
AciI	CCGC	1 cut(s)	270
AclI	AACGTT	1 cut(s)	736
AclWI	GGATC	2 cut(s)	142, 565
AcoI	YGGCCR	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	830
AcuI	CTGAAG	1 cut(s)	831
AfaI	GTAC	2 cut(s)	356, 394
AfiI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1118
AgsI	TTSAA	5 cut(s)	288, 626, 758, 830, 1081
AjnI	CCWGG	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	502, 534
AluBI	AGCT	7 cut(s)	650, 767, 772, 791, 821, 826, 875
AluI	AGCT	7 cut(s)	650, 767, 772, 791, 821, 826, 875
Alw21I	GWGCWC	1 cut(s)	1126
Alw26I	GTCTC	3 cut(s)	598, 692, 1041
Alw44I	GTGCAC	1 cut(s)	1122
AlwI	GGATC	2 cut(s)	142, 565
Aor13HI	TCCGGA	1 cut(s)	47
AoxI	GGCC	2 cut(s)	271, 1102
ApaLI	GTGCAC	1 cut(s)	1122
ApeKI	GCWGC	6 cut(s)	341, 721, 883, 979, 982, 1009
ApoI	RAATTY	1 cut(s)	830
AseI	ATTAAT	1 cut(s)	318
Asp700I	GAANNNNTTC	1 cut(s)	517
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	1 cut(s)	632
AsuHPI	GGTGA	1 cut(s)	469
AvaII	GGWCC	1 cut(s)	632
BaeGI	GKGCMC	1 cut(s)	1126
BanI	GGYRCC	1 cut(s)	494
BbsI	GAAGAC	2 cut(s)	191, 477
Bbv12I	GWGCWC	1 cut(s)	1126
BbvI	GCAGC	6 cut(s)	328, 733, 895, 991, 994, 1021
BccI	CCATC	3 cut(s)	106, 282, 578
BceAI	ACGGC	1 cut(s)	1089
BcgI	CGANNNNNNTGC	4 cut(s)	323, 357, 686, 720
BciT130I	CCWGG	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	598, 692, 1041
BfaI	CTAG	3 cut(s)	87, 156, 1023
BfmI	CTRYAG	2 cut(s)	204, 597
BisI	GCNGC	7 cut(s)	271, 342, 722, 884, 980, 983, 1010
BlpI	GCTNAGC	2 cut(s)	768, 822
BlsI	GCNGC	7 cut(s)	272, 343, 723, 885, 981, 984, 1011
Bme1390I	CCNGG	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	632
BmgT120I	GGNCC	1 cut(s)	632
BmiI	GGNNCC	1 cut(s)	496
BmrFI	CCNGG	1 cut(s)	388
BmsI	GCATC	6 cut(s)	64, 301, 631, 694, 701, 1081
BpiI	GAAGAC	2 cut(s)	191, 477
BpmI	CTGGAG	1 cut(s)	794
Bpu1102I	GCTNAGC	2 cut(s)	768, 822
BpuEI	CTTGAG	3 cut(s)	330, 381, 863
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	1 cut(s)	1041
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1118
Bse1I	ACTGG	2 cut(s)	603, 1123
Bse8I	GATNNNNATC	1 cut(s)	562
BseAI	TCCGGA	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	3 cut(s)	55, 692, 1096
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1118
BseMII	CTCAG	6 cut(s)	204, 425, 648, 759, 813, 848
BseNI	ACTGG	2 cut(s)	603, 1123
BseRI	GAGGAG	1 cut(s)	224
BseSI	GKGCMC	1 cut(s)	1126
BseXI	GCAGC	6 cut(s)	328, 733, 895, 991, 994, 1021
BsgI	GTGCAG	1 cut(s)	363
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	2 cut(s)	273, 1104
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	1126
BsiSI	CCGG	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	4 cut(s)	131, 161, 389, 1118
BsmAI	GTCTC	3 cut(s)	598, 692, 1041
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	2 cut(s)	273, 1104
Bso31I	GGTCTC	1 cut(s)	1041
Bsp1286I	GDGCHC	1 cut(s)	1126
Bsp13I	TCCGGA	1 cut(s)	47
Bsp143I	GATC	4 cut(s)	134, 232, 557, 616
Bsp1720I	GCTNAGC	2 cut(s)	768, 822
BspACI	CCGC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	273, 1104
BspCNI	CTCAG	6 cut(s)	203, 424, 649, 760, 814, 849
BspEI	TCCGGA	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	1 cut(s)	496
BspPI	GGATC	2 cut(s)	142, 565
BspT107I	GGYRCC	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	1041
BsrI	ACTGG	2 cut(s)	603, 1123
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	4 cut(s)	134, 232, 557, 616
Bst2UI	CCWGG	1 cut(s)	388
Bst4CI	ACNGT	1 cut(s)	219
Bst6I	CTCTTC	1 cut(s)	345
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	2 cut(s)	789, 1102
BstDEI	CTNAG	7 cut(s)	190, 411, 657, 768, 822, 857, 962
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	55, 692, 1096
BstFNI	CGCG	1 cut(s)	714
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	4 cut(s)	137, 235, 560, 619
BstMAI	GTCTC	3 cut(s)	598, 692, 1041
BstMBI	GATC	4 cut(s)	134, 232, 557, 616
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 270, 713, 797, 991, 1000, 1009
BstNI	CCWGG	1 cut(s)	388
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	386
BstSFI	CTRYAG	2 cut(s)	204, 597
BstSLI	GKGCMC	1 cut(s)	1126
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	6 cut(s)	328, 733, 895, 991, 994, 1021
BstV2I	GAAGAC	2 cut(s)	191, 477
BstX2I	RGATCY	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	273, 1104
BtsCI	GGATG	3 cut(s)	55, 692, 1096
BtsIMutI	CAGTG	3 cut(s)	441, 610, 1116
Cac8I	GCNNGC	2 cut(s)	789, 1102
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	1 cut(s)	632
Csp6I	GTAC	2 cut(s)	355, 393
CviAII	CATG	3 cut(s)	428, 638, 862
CviQI	GTAC	2 cut(s)	355, 393
DdeI	CTNAG	7 cut(s)	190, 411, 657, 768, 822, 857, 962
DpnI	GATC	4 cut(s)	136, 234, 559, 618
DpnII	GATC	4 cut(s)	134, 232, 557, 616
DraI	TTTAAA	1 cut(s)	837
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	1041
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	831
EcoNI	CCTNNNNNAGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	386
EcoT22I	ATGCAT	1 cut(s)	694
FaeI	CATG	3 cut(s)	431, 641, 865
FalI	AAGNNNNNCTT	4 cut(s)	415, 447, 505, 537
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	3 cut(s)	427, 637, 861
FauNDI	CATATG	3 cut(s)	103, 304, 688
Fnu4HI	GCNGC	7 cut(s)	271, 342, 722, 884, 980, 983, 1010
FokI	GGATG	3 cut(s)	42, 679, 1103
Fsp4HI	GCNGC	7 cut(s)	271, 342, 722, 884, 980, 983, 1010
FspBI	CTAG	3 cut(s)	87, 156, 1023
GlaI	GCGC	1 cut(s)	715
GluI	GCNGC	7 cut(s)	271, 342, 722, 884, 980, 983, 1010
GsuI	CTGGAG	1 cut(s)	794
HaeIII	GGCC	2 cut(s)	273, 1104
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	716
Hin1II	CATG	3 cut(s)	431, 641, 865
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HindIII	AAGCTT	2 cut(s)	648, 789
HinfI	GANTC	6 cut(s)	196, 293, 482, 626, 847, 1055
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	2 cut(s)	740, 1124
Hpy188I	TCNGA	9 cut(s)	39, 150, 193, 414, 621, 658, 697, 750, 858
Hpy188III	TCNNGA	5 cut(s)	48, 347, 398, 555, 630
Hpy8I	GTNNAC	2 cut(s)	740, 1124
Hpy99I	CGWCG	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	1026
HpyCH4III	ACNGT	1 cut(s)	219
HpyCH4IV	ACGT	2 cut(s)	736, 1033
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 270, 713, 797, 991, 1000, 1009
HpyF3I	CTNAG	7 cut(s)	190, 411, 657, 768, 822, 857, 962
HpySE526I	ACGT	2 cut(s)	736, 1033
Hsp92II	CATG	3 cut(s)	431, 641, 865
HspAI	GCGC	1 cut(s)	714
Kpn2I	TCCGGA	1 cut(s)	47
Kzo9I	GATC	4 cut(s)	134, 232, 557, 616
LmnI	GCTCC	3 cut(s)	211, 907, 928
Lsp1109I	GCAGC	6 cut(s)	328, 733, 895, 991, 994, 1021
LweI	GCATC	6 cut(s)	64, 301, 631, 694, 701, 1081
MaeI	CTAG	3 cut(s)	87, 156, 1023
MaeII	ACGT	2 cut(s)	736, 1033
MaeIII	GTNAC	3 cut(s)	290, 1106, 1114
MalI	GATC	4 cut(s)	136, 234, 559, 618
MboI	GATC	4 cut(s)	134, 232, 557, 616
MboII	GAAGA	8 cut(s)	191, 276, 362, 477, 478, 513, 536, 1011
MflI	RGATCY	1 cut(s)	557
MhlI	GDGCHC	1 cut(s)	1126
MluCI	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1061
MlyI	GAGTC	3 cut(s)	205, 287, 491
MmeI	TCCRAC	2 cut(s)	351, 921
Mph1103I	ATGCAT	1 cut(s)	694
MroI	TCCGGA	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	5 cut(s)	240, 318, 422, 836, 918
MslI	CAYNNNNRTG	1 cut(s)	1089
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	388
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	7 cut(s)	61, 270, 713, 797, 991, 1000, 1009
NdeI	CATATG	3 cut(s)	103, 304, 688
NdeII	GATC	4 cut(s)	134, 232, 557, 616
NlaIII	CATG	3 cut(s)	431, 641, 865
NlaIV	GGNNCC	1 cut(s)	496
NmuCI	GTSAC	3 cut(s)	290, 1106, 1114
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	3 cut(s)	626, 847, 1055
PflFI	GACNNNGTC	1 cut(s)	1112
PkrI	GCNGC	7 cut(s)	272, 343, 723, 885, 981, 984, 1011
PleI	GAGTC	3 cut(s)	204, 287, 490
PpsI	GAGTC	3 cut(s)	204, 287, 490
PshBI	ATTAAT	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	386
PspN4I	GGNNCC	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	557
PsyI	GACNNNGTC	1 cut(s)	1112
PvuII	CAGCTG	1 cut(s)	821
RsaI	GTAC	2 cut(s)	356, 394
RsaNI	GTAC	2 cut(s)	355, 393
RseI	CAYNNNNRTG	1 cut(s)	1089
SaqAI	TTAA	5 cut(s)	240, 318, 422, 836, 918
SatI	GCNGC	7 cut(s)	271, 342, 722, 884, 980, 983, 1010
Sau3AI	GATC	4 cut(s)	134, 232, 557, 616
Sau96I	GGNCC	1 cut(s)	632
SchI	GAGTC	3 cut(s)	205, 287, 491
ScrFI	CCNGG	1 cut(s)	388
SduI	GDGCHC	1 cut(s)	1126
SfaNI	GCATC	6 cut(s)	64, 301, 631, 694, 701, 1081
SfcI	CTRYAG	2 cut(s)	204, 597
SinI	GGWCC	1 cut(s)	632
SmiMI	CAYNNNNRTG	1 cut(s)	1089
SmlI	CTYRAG	3 cut(s)	345, 396, 878
SmoI	CTYRAG	3 cut(s)	345, 396, 878
Sse9I	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1061
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	1 cut(s)	923
SspMI	CTAG	3 cut(s)	87, 156, 1023
StyD4I	CCNGG	1 cut(s)	386
TaaI	ACNGT	1 cut(s)	219
TaiI	ACGT	2 cut(s)	739, 1036
TaqI	TCGA	1 cut(s)	333
TasI	AATT	7 cut(s)	315, 670, 725, 830, 852, 935, 1061
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	626, 847, 1055
Tru1I	TTAA	5 cut(s)	240, 318, 422, 836, 918
Tru9I	TTAA	5 cut(s)	240, 318, 422, 836, 918
TscAI	CASTG	3 cut(s)	448, 610, 1123
TseFI	GTSAC	3 cut(s)	290, 1106, 1114
TseI	GCWGC	6 cut(s)	341, 721, 883, 979, 982, 1009
Tsp45I	GTSAC	3 cut(s)	290, 1106, 1114
TspDTI	ATGAA	3 cut(s)	9, 423, 536
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	3 cut(s)	448, 610, 1123
Tth111I	GACNNNGTC	1 cut(s)	1112
VneI	GTGCAC	1 cut(s)	1122
VpaK11BI	GGWCC	1 cut(s)	632
VspI	ATTAAT	1 cut(s)	318
XagI	CCTNNNNNAGG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	830
XceI	RCATGY	1 cut(s)	431
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	3 cut(s)	87, 156, 1023
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.