Rh7DG337300

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
44307774 .. 44316977
9204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG337300.1

Sequence Viewer

Length: 1500 bp
ATGCCCGATGATGATCCGCGTCGCCGTCGTCTCCGGTCACGAAAACCAAACCTCCTTCACTTCTCTGATGGTGGCGATGTCGAGGCCTTCGAAATCCGACTGAAACTCTGTCTCTGTCAGATCCGATTGGCGGAGCAGTACAGCAATCAGAGCAACCATCTCGGTGCCGTGACGCTGTCGGAGCCAGCCGGTCATTCGGACCGCTACCTCCTTTGGCGCGGTCAACGGCTGGCGTTCGAGGTGGTCATGCCTTCTGGTGTTACGCGTCTCAAGGTGATGGCATGGATTGTTTTGACTGGCTACTCTGGGATTGGTGTTGATGTGTTGGTGGCTCCGAGCCCCGTGGGTAGGCCACCAGATCGAGACAAGAGAAGAAGAAGAGAAGATCATTGCATTCCAAGATCTCGATTAATCGCTTCGCCGCCGCATAGTTACTGGGCAGTCAAGTATGGCAAACTCCAAGAGTTCATCAAATATGAGAAATCTGATAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCAGAGAGTCTTCTTATAGAGGAGCAACCTTCTTGGCTTGATGATCTCCTAAACGAGCCGGACACACCTATACGCAGAGGAGGCCACCGTCGTTCTTCAAGCGACTCATTTGCATATGTAGATGCAATTAATGTTTCTAACATTGATTATTCTGCTCAAGATGAGTACAAATACAATAATATGTTTTCTGCACCCTCTTGGGGAACTCAAGATTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACTCCGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTGTCAGTGCCATAAGTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAACATTGTTCTTCACAGTTCAGGATCTTTATCTACTCCGCAAGAAGCAGATGGGGTTGTCTCTACAGCAAGTGAAAAGCAAGATCAGATTGAATCTGGCCCACATGATGCTAAAGCTCCCTCTGAGAAAAAGGACAATTCCAATGCTAAGCCATATGCATCCGAGACAGATGCAAAACGAGCAAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCTGAACTGGAGAGAAATGTGCAAGCTTTACAGGCAAAAGGGACTGAAGTTTCGGCCGAGCTTGAATTTCTAAACCAGCAGAATCTAATTCTGAGCATGGAGAACAAAGCACTCAAGCAGCGGTTAGAAAACATAGCACAGGAGCAACTTATCAAATACTTGGAGCAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGCATTGTATCAGCAACAGCAGCAGCAGCACCAACACCAACAGCAACAGCAACAGCAACAACAACAGCAGCGACCTTCTTCTAGCCATAGACGTAACAACAGCAGAGACCTTGATTCTCAATTTGCAAACCTCTCTTTGAAACACAAGGATGCAAATGCGGGCCGTGACCCTGTCACAGGCGCACTTCGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

56.93

Weight (kDa)

9.05

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 3 cut(s) 19, 219, 265
AciI CCGC 9 cut(s) 17, 131, 202, 219, 422, 425, 911, 1225, 1463
AclI AACGTT 1 cut(s) 1075
AclWI GGATC 3 cut(s) 8, 115, 904
AcoI YGGCCR 1 cut(s) 1158
AcsI RAATTY 1 cut(s) 1169
AcuI CTGAAG 1 cut(s) 1170
AfaI GTAC 2 cut(s) 140, 695
AfiI CCNNNNNNNGG 5 cut(s) 130, 348, 500, 728, 1481
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 5 cut(s) 627, 965, 1097, 1169, 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 841, 873
AluBI AGCT 4 cut(s) 989, 1106, 1130, 1165
AluI AGCT 4 cut(s) 989, 1106, 1130, 1165
Alw26I GTCTC 7 cut(s) 35, 116, 272, 357, 937, 1031, 1404
AlwI GGATC 3 cut(s) 8, 115, 904
AoxI GGCC 6 cut(s) 84, 350, 610, 970, 1158, 1465
ApeKI GCWGC 5 cut(s) 1222, 1324, 1327, 1330, 1372
ApoI RAATTY 1 cut(s) 1169
ArsI GACNNNNNNTTYG 2 cut(s) 1138, 1170
AseI ATTAAT 2 cut(s) 410, 657
Asp700I GAANNNNTTC 1 cut(s) 856
AspLEI GCGC 2 cut(s) 219, 1487
AspS9I GGNCC 3 cut(s) 199, 971, 1465
AsuHPI GGTGA 3 cut(s) 286, 506, 808
AsuII TTCGAA 1 cut(s) 90
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 530, 816
BbvI GCAGC 5 cut(s) 1234, 1336, 1339, 1342, 1384
BccI CCATC 4 cut(s) 62, 165, 271, 917
BceAI ACGGC 4 cut(s) 9, 152, 242, 1452
BcgI CGANNNNNNTGC 6 cut(s) 142, 176, 620, 654, 1025, 1059
BcoDI GTCTC 7 cut(s) 35, 116, 272, 357, 937, 1031, 1404
BfaI CTAG 2 cut(s) 495, 1386
BfmI CTRYAG 1 cut(s) 936
BglII AGATCT 1 cut(s) 401
BisI GCNGC 7 cut(s) 422, 425, 1223, 1325, 1328, 1331, 1373
BlpI GCTNAGC 1 cut(s) 1020
BlsI GCNGC 7 cut(s) 423, 426, 1224, 1326, 1329, 1332, 1374
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 3 cut(s) 199, 971, 1465
BmiI GGNNCC 3 cut(s) 166, 183, 333
BmrI ACTGGG 1 cut(s) 445
BmsI GCATC 5 cut(s) 640, 970, 1033, 1040, 1444
BmuI ACTGGG 1 cut(s) 445
BpiI GAAGAC 2 cut(s) 530, 816
BpmI CTGGAG 1 cut(s) 1133
Bpu1102I GCTNAGC 1 cut(s) 1020
Bpu14I TTCGAA 1 cut(s) 90
BpuEI CTTGAG 4 cut(s) 254, 669, 720, 1202
BsaBI GATNNNNATC 2 cut(s) 12, 901
BsaI GGTCTC 1 cut(s) 1404
BsaJI CCNNGG 1 cut(s) 342
BsaWI WCCGGW 1 cut(s) 33
BsaXI ACNNNNNCTCC 2 cut(s) 36, 66
Bsc4I CCNNNNNNNGG 5 cut(s) 130, 348, 500, 728, 1481
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 3 cut(s) 301, 440, 1116
Bse3DI GCAATG 1 cut(s) 388
Bse8I GATNNNNATC 2 cut(s) 12, 901
BseDI CCNNGG 1 cut(s) 342
BseGI GGATG 2 cut(s) 1031, 1459
BseJI GATNNNNATC 2 cut(s) 12, 901
BseLI CCNNNNNNNGG 5 cut(s) 130, 348, 500, 728, 1481
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 4 cut(s) 543, 764, 987, 1187
BseNI ACTGG 3 cut(s) 301, 440, 1116
BseRI GAGGAG 2 cut(s) 563, 621
BseX3I CGGCCG 1 cut(s) 1158
BseXI GCAGC 5 cut(s) 1234, 1336, 1339, 1342, 1384
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 19, 219, 265
Bsh1285I CGRYCG 1 cut(s) 1161
BshFI GGCC 6 cut(s) 86, 352, 612, 972, 1160, 1467
BshNI GGYRCC 1 cut(s) 164
BsiEI CGRYCG 1 cut(s) 1161
BsiSI CCGG 3 cut(s) 34, 189, 587
BslFI GGGAC 1 cut(s) 1159
BslI CCNNNNNNNGG 5 cut(s) 130, 348, 500, 728, 1481
BsmAI GTCTC 7 cut(s) 35, 116, 272, 357, 937, 1031, 1404
BsmBI CGTCTC 2 cut(s) 35, 272
BsmFI GGGAC 1 cut(s) 1159
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 6 cut(s) 86, 352, 612, 972, 1160, 1467
Bso31I GGTCTC 1 cut(s) 1404
Bsp119I TTCGAA 1 cut(s) 90
Bsp1286I GDGCHC 1 cut(s) 341
Bsp143I GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
Bsp1720I GCTNAGC 1 cut(s) 1020
BspACI CCGC 9 cut(s) 17, 131, 202, 219, 422, 425, 911, 1225, 1463
BspANI GGCC 6 cut(s) 86, 352, 612, 972, 1160, 1467
BspCNI CTCAG 4 cut(s) 542, 763, 988, 1188
BspFNI CGCG 3 cut(s) 19, 219, 265
BspLI GGNNCC 3 cut(s) 166, 183, 333
BspPI GGATC 3 cut(s) 8, 115, 904
BspT104I TTCGAA 1 cut(s) 90
BspT107I GGYRCC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 1404
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 188
BsrI ACTGG 3 cut(s) 301, 440, 1116
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 342
BssMI GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
Bst4CI ACNGT 2 cut(s) 617, 890
Bst6I CTCTTC 1 cut(s) 373
BstBI TTCGAA 1 cut(s) 90
BstC8I GCNNGC 4 cut(s) 186, 231, 1128, 1465
BstDEI CTNAG 5 cut(s) 529, 750, 996, 1020, 1196
BstDSI CCRYGG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 1479
BstF5I GGATG 2 cut(s) 1031, 1459
BstFNI CGCG 3 cut(s) 19, 219, 265
BstHHI GCGC 2 cut(s) 219, 1487
BstKTI GATC 8 cut(s) 16, 123, 361, 388, 404, 574, 899, 958
BstMAI GTCTC 7 cut(s) 35, 116, 272, 357, 937, 1031, 1404
BstMBI GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
BstMCI CGRYCG 1 cut(s) 1161
BstMWI GCNNNNNNNGC 8 cut(s) 150, 181, 609, 1052, 1136, 1324, 1330, 1491
BstNSI RCATGY 1 cut(s) 770
BstSFI CTRYAG 1 cut(s) 936
BstUI CGCG 3 cut(s) 19, 219, 265
BstV1I GCAGC 5 cut(s) 1234, 1336, 1339, 1342, 1384
BstV2I GAAGAC 2 cut(s) 530, 816
BstX2I RGATCY 3 cut(s) 120, 401, 896
BstYI RGATCY 3 cut(s) 120, 401, 896
BstZI CGGCCG 1 cut(s) 1158
BsuRI GGCC 6 cut(s) 86, 352, 612, 972, 1160, 1467
BtgI CCRYGG 1 cut(s) 342
BtgZI GCGATG 1 cut(s) 90
BtsCI GGATG 2 cut(s) 1031, 1459
BtsIMutI CAGTG 1 cut(s) 838
Cac8I GCNNGC 4 cut(s) 186, 231, 1128, 1465
CfoI GCGC 2 cut(s) 219, 1487
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 199, 971, 1465
CpoI CGGWCCG 1 cut(s) 199
CseI GACGC 3 cut(s) 8, 181, 254
Csp6I GTAC 2 cut(s) 139, 694
CspI CGGWCCG 1 cut(s) 199
CviAII CATG 6 cut(s) 247, 282, 767, 816, 977, 1201
CviQI GTAC 2 cut(s) 139, 694
DdeI CTNAG 5 cut(s) 529, 750, 996, 1020, 1196
DpnI GATC 8 cut(s) 15, 122, 360, 387, 403, 573, 898, 957
DpnII GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
EaeI YGGCCR 1 cut(s) 1158
EagI CGGCCG 1 cut(s) 1158
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
EciI GGCGGA 1 cut(s) 146
EclXI CGGCCG 1 cut(s) 1158
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 1404
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 1158
Eco57I CTGAAG 1 cut(s) 1170
EcoNI CCTNNNNNAGG 1 cut(s) 1479
EcoT22I ATGCAT 1 cut(s) 1033
EcoT38I GRGCYC 1 cut(s) 341
Esp3I CGTCTC 2 cut(s) 35, 272
FaeI CATG 6 cut(s) 250, 285, 770, 819, 980, 1204
FalI AAGNNNNNCTT 4 cut(s) 754, 786, 844, 876
FaqI GGGAC 1 cut(s) 1159
FatI CATG 6 cut(s) 246, 281, 766, 815, 976, 1200
FauI CCCGC 1 cut(s) 1456
FauNDI CATATG 2 cut(s) 643, 1027
Fnu4HI GCNGC 7 cut(s) 422, 425, 1223, 1325, 1328, 1331, 1373
FokI GGATG 2 cut(s) 1018, 1466
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 7 cut(s) 422, 425, 1223, 1325, 1328, 1331, 1373
FspBI CTAG 2 cut(s) 495, 1386
GlaI GCGC 2 cut(s) 218, 1486
GluI GCNGC 7 cut(s) 422, 425, 1223, 1325, 1328, 1331, 1373
GsuI CTGGAG 1 cut(s) 1133
HaeIII GGCC 6 cut(s) 86, 352, 612, 972, 1160, 1467
HapII CCGG 3 cut(s) 34, 189, 587
HgaI GACGC 3 cut(s) 8, 181, 254
HhaI GCGC 2 cut(s) 219, 1487
Hin1II CATG 6 cut(s) 250, 285, 770, 819, 980, 1204
Hin6I GCGC 2 cut(s) 217, 1485
HinP1I GCGC 2 cut(s) 217, 1485
HincII GTYRAC 1 cut(s) 224
HindII GTYRAC 1 cut(s) 224
HindIII AAGCTT 1 cut(s) 1128
HinfI GANTC 6 cut(s) 535, 632, 821, 965, 1186, 1418
HpaII CCGG 3 cut(s) 34, 189, 587
HphI GGTGA 3 cut(s) 286, 506, 808
Hpy166II GTNNAC 2 cut(s) 224, 1079
Hpy188III TCNNGA 6 cut(s) 39, 362, 405, 686, 737, 894
Hpy8I GTNNAC 2 cut(s) 224, 1079
Hpy99I CGWCG 3 cut(s) 24, 30, 621
HpyAV CCTTC 5 cut(s) 65, 97, 261, 567, 1389
HpyCH4III ACNGT 2 cut(s) 617, 890
HpyCH4IV ACGT 2 cut(s) 1075, 1396
HpyF10VI GCNNNNNNNGC 8 cut(s) 150, 181, 609, 1052, 1136, 1324, 1330, 1491
HpyF3I CTNAG 5 cut(s) 529, 750, 996, 1020, 1196
HpySE526I ACGT 2 cut(s) 1075, 1396
Hsp92II CATG 6 cut(s) 250, 285, 770, 819, 980, 1204
HspAI GCGC 2 cut(s) 217, 1485
Kzo9I GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
LmnI GCTCC 7 cut(s) 133, 181, 337, 550, 994, 1246, 1267
Lsp1109I GCAGC 5 cut(s) 1234, 1336, 1339, 1342, 1384
LweI GCATC 5 cut(s) 640, 970, 1033, 1040, 1444
MaeI CTAG 2 cut(s) 495, 1386
MaeII ACGT 2 cut(s) 1075, 1396
MaeIII GTNAC 8 cut(s) 36, 169, 259, 431, 842, 1397, 1469, 1477
MalI GATC 8 cut(s) 15, 122, 360, 387, 403, 573, 898, 957
MboI GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
MflI RGATCY 3 cut(s) 120, 401, 896
MhlI GDGCHC 1 cut(s) 341
MluCI AATT 7 cut(s) 654, 1009, 1064, 1169, 1191, 1274, 1424
MluI ACGCGT 1 cut(s) 263
MlyI GAGTC 3 cut(s) 544, 626, 830
MmeI TCCRAC 3 cut(s) 121, 159, 1260
Mph1103I ATGCAT 1 cut(s) 1033
MroXI GAANNNNTTC 1 cut(s) 856
MseI TTAA 3 cut(s) 410, 657, 761
MslI CAYNNNNRTG 2 cut(s) 162, 1452
MspA1I CMGCKG 1 cut(s) 1225
MspI CCGG 3 cut(s) 34, 189, 587
Mva1269I GAATGC 1 cut(s) 393
MvnI CGCG 3 cut(s) 19, 219, 265
MwoI GCNNNNNNNGC 8 cut(s) 150, 181, 609, 1052, 1136, 1324, 1330, 1491
NdeI CATATG 2 cut(s) 643, 1027
NdeII GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
NlaIII CATG 6 cut(s) 250, 285, 770, 819, 980, 1204
NlaIV GGNNCC 3 cut(s) 166, 183, 333
NmeAIII GCCGAG 1 cut(s) 1186
NmuCI GTSAC 4 cut(s) 36, 169, 1469, 1477
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 90
PceI AGGCCT 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 856
PfeI GAWTC 3 cut(s) 965, 1186, 1418
PflFI GACNNNGTC 2 cut(s) 175, 1475
PkrI GCNGC 7 cut(s) 423, 426, 1224, 1326, 1329, 1332, 1374
PleI GAGTC 3 cut(s) 543, 626, 829
PpsI GAGTC 3 cut(s) 543, 626, 829
PshBI ATTAAT 2 cut(s) 410, 657
Psp1406I AACGTT 1 cut(s) 1075
PspN4I GGNNCC 3 cut(s) 166, 183, 333
PspPI GGNCC 3 cut(s) 199, 971, 1465
PsuI RGATCY 3 cut(s) 120, 401, 896
PsyI GACNNNGTC 2 cut(s) 175, 1475
RsaI GTAC 2 cut(s) 140, 695
RsaNI GTAC 2 cut(s) 139, 694
RseI CAYNNNNRTG 2 cut(s) 162, 1452
Rsr2I CGGWCCG 1 cut(s) 199
RsrII CGGWCCG 1 cut(s) 199
SaqAI TTAA 3 cut(s) 410, 657, 761
SatI GCNGC 7 cut(s) 422, 425, 1223, 1325, 1328, 1331, 1373
Sau3AI GATC 8 cut(s) 13, 120, 358, 385, 401, 571, 896, 955
Sau96I GGNCC 3 cut(s) 199, 971, 1465
SchI GAGTC 3 cut(s) 544, 626, 830
SduI GDGCHC 1 cut(s) 341
SfaNI GCATC 5 cut(s) 640, 970, 1033, 1040, 1444
SfcI CTRYAG 1 cut(s) 936
SfuI TTCGAA 1 cut(s) 90
SinI GGWCC 1 cut(s) 199
SmiMI CAYNNNNRTG 2 cut(s) 162, 1452
SmlI CTYRAG 4 cut(s) 269, 684, 735, 1217
SmoI CTYRAG 4 cut(s) 269, 684, 735, 1217
Sse9I AATT 7 cut(s) 654, 1009, 1064, 1169, 1191, 1274, 1424
SseBI AGGCCT 1 cut(s) 86
SsiI CCGC 9 cut(s) 17, 131, 202, 219, 422, 425, 911, 1225, 1463
SspMI CTAG 2 cut(s) 495, 1386
StuI AGGCCT 1 cut(s) 86
TaaI ACNGT 2 cut(s) 617, 890
TaiI ACGT 2 cut(s) 1078, 1399
TaqI TCGA 5 cut(s) 81, 90, 237, 361, 406
TasI AATT 7 cut(s) 654, 1009, 1064, 1169, 1191, 1274, 1424
TatI WGTACW 2 cut(s) 138, 693
TauI GCSGC 2 cut(s) 424, 427
TfiI GAWTC 3 cut(s) 965, 1186, 1418
Tru1I TTAA 3 cut(s) 410, 657, 761
Tru9I TTAA 3 cut(s) 410, 657, 761
TscAI CASTG 1 cut(s) 838
TseFI GTSAC 4 cut(s) 36, 169, 1469, 1477
TseI GCWGC 5 cut(s) 1222, 1324, 1327, 1330, 1372
Tsp45I GTSAC 4 cut(s) 36, 169, 1469, 1477
TspDTI ATGAA 2 cut(s) 457, 762
TspRI CASTG 1 cut(s) 838
Tth111I GACNNNGTC 2 cut(s) 175, 1475
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 2 cut(s) 410, 657
XagI CCTNNNNNAGG 1 cut(s) 1479
XapI RAATTY 1 cut(s) 1169
XceI RCATGY 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 856
XspI CTAG 2 cut(s) 495, 1386
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.