Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0007086

Physical Location & Seq

Genomic Coordinates Reverse (-)

44010345 .. 44023134

Gene Structure 12790 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG356500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGGACGATACAACAAAAACTTTGATGGTGATAACATTAAAACACCATGCTTCAAGGCTTCATCAAGAAGACATGCAAGGCAAATGGCTTTTCGTAGGCCCCTCCTTCAAGCATAGAACTGGGCAGTCAAGTATGGCAAACTCCAAGAGTTCATCAAATATGAGAAATCTGATGTATTCCGGAAAGCATCCTTTGCTTCCTCCTAAAAGTCCATTTCCTAGTGTTTCCCCATCGTATGCAGATTATGTCTTTAGTCCTGCGATAGGATCAAAAACTATTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCAGAGAGTCTTCTTATAGAGGAGCAACCTTCTTGGCTTGATGATCTCCTAAACGAGCCGGACACACCTATACGCAGAGGAGGCCACCGTCGTTCTTCAAGCGACTCATTTGCATATGTAGATGCAATTAATGTTTCTAACATTGATTATTCTGCTCAAGATGAGTACAAATACAATAATATGTTTTCTGCACCCTCTTGGGGAACTCAAGATTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACTCCGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTGTGAGTGCCATAAGTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAACATTGTTCTTCACAGTTCAGGATCTTTAACTACTCCGCAAGAAGCAGATGGGGTTGTCTCTACAGCAAGTGAAAAGCAAGATCAGATTGAATCTGGCCCACATGATGCTAAAGCTCCCTCTGAGAAAAAGGACAATTCCAATGCTAAGCCATATGCATCTGAGACAGATGCAAAACGCGCAAAACAGCAATTTGCTCAACGTTCACGGGTTAGGAAACTTCAATACATAGCTGAACTGGAGAGAAATGTGCAAGCTTTACAGGCAAAAGGGACTGAAGTTTCGGCCGAGCTTGAATTTCTAAACCAGCAGAATCTAATTCTGAGCATGGAGAACAAAGCTCTCAAGCAGCGGTTAGAAAATATAGCACAGGAGCAACTTATCAAATACTTGGAGCAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGCATTGTATCAGCAACAGCAACAGCAGCACCAACAGCAACAGCAACAACAACAGCAACAGCAGCGACCTTCTTCTAGCCATAGACGTAACAACAGCAGAGACCTTGATTCTCAATTTGCAAACCTCTCTTTGAAACACAAGGATGCAAATGCGGGCCGTGACCCTGTCACAGGCGCACTTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

428

Amino Acids

48.42

Weight (kDa)

8.91

Isoelectric Point (pI)

64.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58110 AT1G58110 AT4G06598 AT4G06598
fragaria_vesca	FvH4_5g28730 FvH4_5g28730 FvH4_5g28730 FvH4_5g28730
malus_domestica	MD08G1238800.v1.1 MD15G1430600.v1.1
prunus_persica	Prupe.1G575800_v2.0.a1 Prupe.1G575800_v2.0.a1
pyrus_communis	pycom08g20730 pycom15g38060
rosa_chinensis	RchiOBHm_Chr7g0220891
rosa_laevigata	RLG00000002194
rosa_multiflora	Rmu_sc0002105.1_g000033 Rmu_sc0011957.1_g000001
rosa_roxburghii	Rroxscaffold_3G00238900
rosa_rugosa	Rorug07G0198200 Rorug07G0198300
rosa_samantha	Rh7AG338400 Rh7BG329200 Rh7CG356500 Rh7DG337300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	846
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	3 cut(s)	704, 1018, 1250
AclI	AACGTT	1 cut(s)	868
AclWI	GGATC	2 cut(s)	274, 697
AcoI	YGGCCR	1 cut(s)	951
AcsI	RAATTY	1 cut(s)	962
AcuI	CTGAAG	1 cut(s)	963
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	263, 293, 521, 1268
AgsI	TTSAA	7 cut(s)	54, 109, 420, 758, 890, 962, 1231
AjuI	GAANNNNNNNTTGG	2 cut(s)	634, 666
AluBI	AGCT	5 cut(s)	782, 899, 923, 958, 1007
AluI	AGCT	5 cut(s)	782, 899, 923, 958, 1007
Alw26I	GTCTC	3 cut(s)	730, 824, 1191
AlwI	GGATC	2 cut(s)	274, 697
Aor13HI	TCCGGA	1 cut(s)	179
AoxI	GGCC	5 cut(s)	97, 403, 763, 951, 1252
ApeKI	GCWGC	3 cut(s)	1015, 1123, 1159
ApoI	RAATTY	1 cut(s)	962
ArsI	GACNNNNNNTTYG	2 cut(s)	931, 963
AseI	ATTAAT	1 cut(s)	450
Asp700I	GAANNNNTTC	1 cut(s)	649
AspLEI	GCGC	2 cut(s)	848, 1274
AspS9I	GGNCC	3 cut(s)	98, 764, 1252
AsuHPI	GGTGA	3 cut(s)	40, 299, 601
BbsI	GAAGAC	3 cut(s)	75, 323, 609
BbvI	GCAGC	3 cut(s)	1027, 1135, 1171
BccI	CCATC	3 cut(s)	19, 238, 710
BceAI	ACGGC	1 cut(s)	1239
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BcoDI	GTCTC	3 cut(s)	730, 824, 1191
BfaI	CTAG	3 cut(s)	219, 288, 1173
BfmI	CTRYAG	1 cut(s)	729
BisI	GCNGC	3 cut(s)	1016, 1124, 1160
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	3 cut(s)	1017, 1125, 1161
BmgT120I	GGNCC	3 cut(s)	98, 764, 1252
BmiI	GGNNCC	1 cut(s)	100
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	6 cut(s)	196, 433, 763, 826, 833, 1231
BmuI	ACTGGG	1 cut(s)	129
BpiI	GAAGAC	3 cut(s)	75, 323, 609
BpmI	CTGGAG	1 cut(s)	926
Bpu1102I	GCTNAGC	1 cut(s)	813
BpuEI	CTTGAG	3 cut(s)	462, 513, 995
BsaI	GGTCTC	1 cut(s)	1191
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	4 cut(s)	263, 293, 521, 1268
Bse1I	ACTGG	2 cut(s)	124, 909
BseAI	TCCGGA	1 cut(s)	179
BseGI	GGATG	2 cut(s)	187, 1246
BseLI	CCNNNNNNNGG	4 cut(s)	263, 293, 521, 1268
BseMII	CTCAG	5 cut(s)	336, 557, 780, 819, 980
BseNI	ACTGG	2 cut(s)	124, 909
BseRI	GAGGAG	2 cut(s)	356, 414
BseX3I	CGGCCG	1 cut(s)	951
BseXI	GCAGC	3 cut(s)	1027, 1135, 1171
BsgI	GTGCAG	1 cut(s)	495
Bsh1236I	CGCG	1 cut(s)	846
Bsh1285I	CGRYCG	1 cut(s)	954
BshFI	GGCC	5 cut(s)	99, 405, 765, 953, 1254
BsiEI	CGRYCG	1 cut(s)	954
BsiSI	CCGG	2 cut(s)	180, 380
BslFI	GGGAC	1 cut(s)	952
BslI	CCNNNNNNNGG	4 cut(s)	263, 293, 521, 1268
BsmAI	GTCTC	3 cut(s)	730, 824, 1191
BsmFI	GGGAC	1 cut(s)	952
BsnI	GGCC	5 cut(s)	99, 405, 765, 953, 1254
Bso31I	GGTCTC	1 cut(s)	1191
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	266, 364, 689, 748
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	3 cut(s)	704, 1018, 1250
BspANI	GGCC	5 cut(s)	99, 405, 765, 953, 1254
BspCNI	CTCAG	5 cut(s)	335, 556, 781, 820, 981
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	1 cut(s)	846
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	2 cut(s)	274, 697
BspTNI	GGTCTC	1 cut(s)	1191
BsrI	ACTGG	2 cut(s)	124, 909
BssMI	GATC	4 cut(s)	266, 364, 689, 748
Bst4CI	ACNGT	2 cut(s)	410, 683
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	2 cut(s)	921, 1252
BstDEI	CTNAG	6 cut(s)	322, 543, 789, 813, 828, 989
BstENI	CCTNNNNNAGG	2 cut(s)	261, 1266
BstF5I	GGATG	2 cut(s)	187, 1246
BstFNI	CGCG	1 cut(s)	846
BstHHI	GCGC	2 cut(s)	848, 1274
BstKTI	GATC	4 cut(s)	269, 367, 692, 751
BstMAI	GTCTC	3 cut(s)	730, 824, 1191
BstMBI	GATC	4 cut(s)	266, 364, 689, 748
BstMCI	CGRYCG	1 cut(s)	954
BstMWI	GCNNNNNNNGC	8 cut(s)	193, 402, 845, 929, 1123, 1132, 1159, 1278
BstNSI	RCATGY	2 cut(s)	76, 563
BstSFI	CTRYAG	1 cut(s)	729
BstUI	CGCG	1 cut(s)	846
BstV1I	GCAGC	3 cut(s)	1027, 1135, 1171
BstV2I	GAAGAC	3 cut(s)	75, 323, 609
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
BstZI	CGGCCG	1 cut(s)	951
BsuRI	GGCC	5 cut(s)	99, 405, 765, 953, 1254
BtsCI	GGATG	2 cut(s)	187, 1246
Cac8I	GCNNGC	2 cut(s)	921, 1252
CfoI	GCGC	2 cut(s)	848, 1274
Cfr13I	GGNCC	3 cut(s)	98, 764, 1252
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	6 cut(s)	47, 73, 560, 609, 770, 994
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	6 cut(s)	322, 543, 789, 813, 828, 989
DpnI	GATC	4 cut(s)	268, 366, 691, 750
DpnII	GATC	4 cut(s)	266, 364, 689, 748
EaeI	YGGCCR	1 cut(s)	951
EagI	CGGCCG	1 cut(s)	951
EclXI	CGGCCG	1 cut(s)	951
Eco31I	GGTCTC	1 cut(s)	1191
Eco52I	CGGCCG	1 cut(s)	951
Eco57I	CTGAAG	1 cut(s)	963
EcoNI	CCTNNNNNAGG	2 cut(s)	261, 1266
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	826
FaeI	CATG	6 cut(s)	50, 76, 563, 612, 773, 997
FalI	AAGNNNNNCTT	4 cut(s)	547, 579, 637, 669
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	6 cut(s)	46, 72, 559, 608, 769, 993
FauI	CCCGC	1 cut(s)	1243
FauNDI	CATATG	2 cut(s)	436, 820
Fnu4HI	GCNGC	3 cut(s)	1016, 1124, 1160
FokI	GGATG	2 cut(s)	174, 1253
Fsp4HI	GCNGC	3 cut(s)	1016, 1124, 1160
FspBI	CTAG	3 cut(s)	219, 288, 1173
GlaI	GCGC	2 cut(s)	847, 1273
GluI	GCNGC	3 cut(s)	1016, 1124, 1160
GsuI	CTGGAG	1 cut(s)	926
HaeIII	GGCC	5 cut(s)	99, 405, 765, 953, 1254
HapII	CCGG	2 cut(s)	180, 380
HhaI	GCGC	2 cut(s)	848, 1274
Hin1II	CATG	6 cut(s)	50, 76, 563, 612, 773, 997
Hin6I	GCGC	2 cut(s)	846, 1272
HinP1I	GCGC	2 cut(s)	846, 1272
HindIII	AAGCTT	1 cut(s)	921
HinfI	GANTC	6 cut(s)	328, 425, 614, 758, 979, 1205
HpaII	CCGG	2 cut(s)	180, 380
HphI	GGTGA	3 cut(s)	40, 299, 601
Hpy166II	GTNNAC	1 cut(s)	872
Hpy188I	TCNGA	9 cut(s)	171, 282, 325, 546, 577, 753, 790, 829, 990
Hpy188III	TCNNGA	5 cut(s)	65, 180, 479, 530, 687
Hpy8I	GTNNAC	1 cut(s)	872
Hpy99I	CGWCG	1 cut(s)	414
HpyAV	CCTTC	3 cut(s)	115, 360, 1176
HpyCH4III	ACNGT	2 cut(s)	410, 683
HpyCH4IV	ACGT	2 cut(s)	868, 1183
HpyF10VI	GCNNNNNNNGC	8 cut(s)	193, 402, 845, 929, 1123, 1132, 1159, 1278
HpyF3I	CTNAG	6 cut(s)	322, 543, 789, 813, 828, 989
HpySE526I	ACGT	2 cut(s)	868, 1183
Hsp92II	CATG	6 cut(s)	50, 76, 563, 612, 773, 997
HspAI	GCGC	2 cut(s)	846, 1272
Kpn2I	TCCGGA	1 cut(s)	179
Kzo9I	GATC	4 cut(s)	266, 364, 689, 748
LmnI	GCTCC	4 cut(s)	343, 787, 1039, 1060
Lsp1109I	GCAGC	3 cut(s)	1027, 1135, 1171
LweI	GCATC	6 cut(s)	196, 433, 763, 826, 833, 1231
MaeI	CTAG	3 cut(s)	219, 288, 1173
MaeII	ACGT	2 cut(s)	868, 1183
MaeIII	GTNAC	4 cut(s)	635, 1184, 1256, 1264
MalI	GATC	4 cut(s)	268, 366, 691, 750
MboI	GATC	4 cut(s)	266, 364, 689, 748
MboII	GAAGA	8 cut(s)	80, 323, 408, 609, 610, 645, 668, 1161
MflI	RGATCY	1 cut(s)	689
MluCI	AATT	7 cut(s)	447, 802, 857, 962, 984, 1067, 1211
MlyI	GAGTC	3 cut(s)	337, 419, 623
MmeI	TCCRAC	1 cut(s)	1053
Mph1103I	ATGCAT	1 cut(s)	826
MroI	TCCGGA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	649
MseI	TTAA	4 cut(s)	38, 450, 554, 695
MslI	CAYNNNNRTG	1 cut(s)	1239
MspA1I	CMGCKG	1 cut(s)	1018
MspI	CCGG	2 cut(s)	180, 380
MvnI	CGCG	1 cut(s)	846
MwoI	GCNNNNNNNGC	8 cut(s)	193, 402, 845, 929, 1123, 1132, 1159, 1278
NdeI	CATATG	2 cut(s)	436, 820
NdeII	GATC	4 cut(s)	266, 364, 689, 748
NlaIII	CATG	6 cut(s)	50, 76, 563, 612, 773, 997
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	979
NmuCI	GTSAC	2 cut(s)	1256, 1264
NsiI	ATGCAT	1 cut(s)	826
NspI	RCATGY	2 cut(s)	76, 563
PdmI	GAANNNNTTC	1 cut(s)	649
PfeI	GAWTC	3 cut(s)	758, 979, 1205
PflFI	GACNNNGTC	1 cut(s)	1262
PkrI	GCNGC	3 cut(s)	1017, 1125, 1161
PleI	GAGTC	3 cut(s)	336, 419, 622
PpsI	GAGTC	3 cut(s)	336, 419, 622
PshBI	ATTAAT	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	868
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	98, 764, 1252
PsuI	RGATCY	1 cut(s)	689
PsyI	GACNNNGTC	1 cut(s)	1262
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	1239
SaqAI	TTAA	4 cut(s)	38, 450, 554, 695
SatI	GCNGC	3 cut(s)	1016, 1124, 1160
Sau3AI	GATC	4 cut(s)	266, 364, 689, 748
Sau96I	GGNCC	3 cut(s)	98, 764, 1252
SchI	GAGTC	3 cut(s)	337, 419, 623
SfaNI	GCATC	6 cut(s)	196, 433, 763, 826, 833, 1231
SfcI	CTRYAG	1 cut(s)	729
SmiMI	CAYNNNNRTG	1 cut(s)	1239
SmlI	CTYRAG	3 cut(s)	477, 528, 1010
SmoI	CTYRAG	3 cut(s)	477, 528, 1010
Sse9I	AATT	7 cut(s)	447, 802, 857, 962, 984, 1067, 1211
SsiI	CCGC	3 cut(s)	704, 1018, 1250
SspMI	CTAG	3 cut(s)	219, 288, 1173
TaaI	ACNGT	2 cut(s)	410, 683
TaiI	ACGT	2 cut(s)	871, 1186
TasI	AATT	7 cut(s)	447, 802, 857, 962, 984, 1067, 1211
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	758, 979, 1205
Tru1I	TTAA	4 cut(s)	38, 450, 554, 695
Tru9I	TTAA	4 cut(s)	38, 450, 554, 695
TseFI	GTSAC	2 cut(s)	1256, 1264
TseI	GCWGC	3 cut(s)	1015, 1123, 1159
Tsp45I	GTSAC	2 cut(s)	1256, 1264
TspDTI	ATGAA	3 cut(s)	50, 141, 555
Tth111I	GACNNNGTC	1 cut(s)	1262
VspI	ATTAAT	1 cut(s)	450
XagI	CCTNNNNNAGG	2 cut(s)	261, 1266
XapI	RAATTY	1 cut(s)	962
XceI	RCATGY	2 cut(s)	76, 563
XmnI	GAANNNNTTC	1 cut(s)	649
XspI	CTAG	3 cut(s)	219, 288, 1173
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.