RchiOBHm_Chr7g0220891

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007086
Physical Location & Seq
Reverse (-)
41811142 .. 41817970
6829 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19769

Sequence Viewer

Length: 1137 bp
ATGGCAAACTCCAAGAGTTCATCAAATATGAGAAATCTGATGTATTCTGGAAAGCATCCTTTGCTTCCTCCTAAAAGTCCATTTCCTAGTGTTTCCCCATCGTATGCAGATTATGTCTTTAGTCCTGCGATAGGATCAAAAACTATTCAGAAGCCTAGAGAGGGAAATGCACATCACCAGCGAACTTCCTCAGAGAGTCTTCTTATAGAGGAGCAACCTTCTTGGCTTGATGATCTCCTAAACGAGCCGGACACACCTATACGCAGAGGAGGCCACCGTCGTTCTTCAAGCGACTCATTTGCATATGTAGATGCAATTAATGTTTCTAACATTGATTATTCTGCTCAAGATGAGTACAAATACAATAATATGTTTTCTGCACCCTCTTGGGGAACTCAAGATTTTGACCCTCAGACAGATTTAAGACATGCTTCATTATACTCCGAACTGAACTTGGTGAAGCAGAAGAATAAGGCATGGGAGTCTTCTGTGAGTGCCATAAGTAACCCAAGAAGCCTTTCTTCTGTCAAGGATAACATTGTTCTTCACAGTTCAGGATCTTTATCTACTCCGCAAGAAGCAGATGGGGTTGTCTCTACAGCAAGTGAAAAGCAAGATCAGATTGAATCTGGCCCACATGATGCTAAAGCTCCCTCTGAGAAAAAGGACAATTCCAATGCTAAGCCATATGCATCTGAGACAGATGCAAAACGCGCAAAACAGCAATTTGCTCAACGTTCACGGGTTCGGAAACTTCAATACATAGCTGAACTGGAGAGAAATGTGCAAGCTTTACAGGCAGAAGGGACTGAAGTTTCGGCCGAGCTTGAATTTCTAAACCAGCAGAATCTAATTCTGAGCATGGAGAACAAAGCTCTCAAGCAGCGGTTAGAAAATATAGCACAGGAGCAACTTATCAAATACTTGGAGCAAGAATTGTTGGAGAGGGAGATTGGGAGGCTACGAGCATTGTATCAGCAACAGCAACAGCAACAACAACAGCAACAGCAGCGACCTTCTTCTAGCCATAGACGTAACAACAGCAGAGACCTTGATTCTCAATTTGCAAACCTCTCTTTGAAACACAAGGATGCAAATGCGGGCCGTGACCCTGTCACAGGCGCACTTCGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

42.57

Weight (kDa)

7.15

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 714
AciI CCGC 3 cut(s) 572, 886, 1100
AclI AACGTT 1 cut(s) 736
AclWI GGATC 2 cut(s) 142, 565
AcoI YGGCCR 1 cut(s) 819
AcsI RAATTY 1 cut(s) 830
AcuI CTGAAG 1 cut(s) 831
AfaI GTAC 1 cut(s) 356
AfiI CCNNNNNNNGG 4 cut(s) 131, 161, 389, 1118
AgsI TTSAA 5 cut(s) 288, 626, 758, 830, 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 502, 534
AluBI AGCT 5 cut(s) 650, 767, 791, 826, 875
AluI AGCT 5 cut(s) 650, 767, 791, 826, 875
Alw26I GTCTC 3 cut(s) 598, 692, 1041
AlwI GGATC 2 cut(s) 142, 565
AoxI GGCC 4 cut(s) 271, 631, 819, 1102
ApeKI GCWGC 2 cut(s) 883, 1009
ApoI RAATTY 1 cut(s) 830
ArsI GACNNNNNNTTYG 2 cut(s) 799, 831
AseI ATTAAT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 517
AspLEI GCGC 2 cut(s) 716, 1124
AspS9I GGNCC 2 cut(s) 632, 1102
AsuHPI GGTGA 2 cut(s) 167, 469
BbsI GAAGAC 2 cut(s) 191, 477
BbvI GCAGC 2 cut(s) 895, 1021
BccI CCATC 2 cut(s) 106, 578
BceAI ACGGC 1 cut(s) 1089
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BcoDI GTCTC 3 cut(s) 598, 692, 1041
BfaI CTAG 3 cut(s) 87, 156, 1023
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 2 cut(s) 884, 1010
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 2 cut(s) 885, 1011
BmgT120I GGNCC 2 cut(s) 632, 1102
BmsI GCATC 6 cut(s) 64, 301, 631, 694, 701, 1081
BpiI GAAGAC 2 cut(s) 191, 477
BpmI CTGGAG 1 cut(s) 794
Bpu1102I GCTNAGC 1 cut(s) 681
BpuEI CTTGAG 3 cut(s) 330, 381, 863
BsaBI GATNNNNATC 1 cut(s) 562
BsaI GGTCTC 1 cut(s) 1041
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 161, 389, 1118
Bse1I ACTGG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 562
BseGI GGATG 2 cut(s) 55, 1096
BseJI GATNNNNATC 1 cut(s) 562
BseLI CCNNNNNNNGG 4 cut(s) 131, 161, 389, 1118
BseMII CTCAG 5 cut(s) 204, 425, 648, 687, 848
BseNI ACTGG 1 cut(s) 777
BseRI GAGGAG 2 cut(s) 224, 282
BseX3I CGGCCG 1 cut(s) 819
BseXI GCAGC 2 cut(s) 895, 1021
BsgI GTGCAG 1 cut(s) 363
Bsh1236I CGCG 1 cut(s) 714
Bsh1285I CGRYCG 1 cut(s) 822
BshFI GGCC 4 cut(s) 273, 633, 821, 1104
BsiEI CGRYCG 1 cut(s) 822
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 820
BslI CCNNNNNNNGG 4 cut(s) 131, 161, 389, 1118
BsmAI GTCTC 3 cut(s) 598, 692, 1041
BsmFI GGGAC 1 cut(s) 820
BsnI GGCC 4 cut(s) 273, 633, 821, 1104
Bso31I GGTCTC 1 cut(s) 1041
Bsp143I GATC 4 cut(s) 134, 232, 557, 616
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 3 cut(s) 572, 886, 1100
BspANI GGCC 4 cut(s) 273, 633, 821, 1104
BspCNI CTCAG 5 cut(s) 203, 424, 649, 688, 849
BspFNI CGCG 1 cut(s) 714
BspPI GGATC 2 cut(s) 142, 565
BspTNI GGTCTC 1 cut(s) 1041
BsrI ACTGG 1 cut(s) 777
BssMI GATC 4 cut(s) 134, 232, 557, 616
Bst4CI ACNGT 2 cut(s) 278, 551
BstAPI GCANNNNNTGC 1 cut(s) 61
BstC8I GCNNGC 2 cut(s) 789, 1102
BstDEI CTNAG 6 cut(s) 190, 411, 657, 681, 696, 857
BstENI CCTNNNNNAGG 2 cut(s) 129, 1116
BstF5I GGATG 2 cut(s) 55, 1096
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 2 cut(s) 716, 1124
BstKTI GATC 4 cut(s) 137, 235, 560, 619
BstMAI GTCTC 3 cut(s) 598, 692, 1041
BstMBI GATC 4 cut(s) 134, 232, 557, 616
BstMCI CGRYCG 1 cut(s) 822
BstMWI GCNNNNNNNGC 6 cut(s) 61, 270, 713, 797, 1009, 1128
BstNSI RCATGY 1 cut(s) 431
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 2 cut(s) 895, 1021
BstV2I GAAGAC 2 cut(s) 191, 477
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BstZI CGGCCG 1 cut(s) 819
BsuRI GGCC 4 cut(s) 273, 633, 821, 1104
BtsCI GGATG 2 cut(s) 55, 1096
Cac8I GCNNGC 2 cut(s) 789, 1102
CfoI GCGC 2 cut(s) 716, 1124
Cfr13I GGNCC 2 cut(s) 632, 1102
Csp6I GTAC 1 cut(s) 355
CviAII CATG 4 cut(s) 428, 477, 638, 862
CviQI GTAC 1 cut(s) 355
DdeI CTNAG 6 cut(s) 190, 411, 657, 681, 696, 857
DpnI GATC 4 cut(s) 136, 234, 559, 618
DpnII GATC 4 cut(s) 134, 232, 557, 616
EaeI YGGCCR 1 cut(s) 819
EagI CGGCCG 1 cut(s) 819
EclXI CGGCCG 1 cut(s) 819
Eco31I GGTCTC 1 cut(s) 1041
Eco52I CGGCCG 1 cut(s) 819
Eco57I CTGAAG 1 cut(s) 831
EcoNI CCTNNNNNAGG 2 cut(s) 129, 1116
EcoT22I ATGCAT 1 cut(s) 694
FaeI CATG 4 cut(s) 431, 480, 641, 865
FalI AAGNNNNNCTT 4 cut(s) 415, 447, 505, 537
FaqI GGGAC 1 cut(s) 820
FatI CATG 4 cut(s) 427, 476, 637, 861
FauI CCCGC 1 cut(s) 1093
FauNDI CATATG 2 cut(s) 304, 688
Fnu4HI GCNGC 2 cut(s) 884, 1010
FokI GGATG 2 cut(s) 42, 1103
Fsp4HI GCNGC 2 cut(s) 884, 1010
FspBI CTAG 3 cut(s) 87, 156, 1023
GlaI GCGC 2 cut(s) 715, 1123
GluI GCNGC 2 cut(s) 884, 1010
GsuI CTGGAG 1 cut(s) 794
HaeIII GGCC 4 cut(s) 273, 633, 821, 1104
HapII CCGG 1 cut(s) 248
HhaI GCGC 2 cut(s) 716, 1124
Hin1II CATG 4 cut(s) 431, 480, 641, 865
Hin6I GCGC 2 cut(s) 714, 1122
HinP1I GCGC 2 cut(s) 714, 1122
HindIII AAGCTT 1 cut(s) 789
HinfI GANTC 6 cut(s) 196, 293, 482, 626, 847, 1055
HpaII CCGG 1 cut(s) 248
HphI GGTGA 2 cut(s) 167, 469
Hpy166II GTNNAC 1 cut(s) 740
Hpy188III TCNNGA 4 cut(s) 48, 347, 398, 555
Hpy8I GTNNAC 1 cut(s) 740
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 3 cut(s) 228, 797, 1026
HpyCH4III ACNGT 2 cut(s) 278, 551
HpyCH4IV ACGT 2 cut(s) 736, 1033
HpyF10VI GCNNNNNNNGC 6 cut(s) 61, 270, 713, 797, 1009, 1128
HpyF3I CTNAG 6 cut(s) 190, 411, 657, 681, 696, 857
HpySE526I ACGT 2 cut(s) 736, 1033
Hsp92II CATG 4 cut(s) 431, 480, 641, 865
HspAI GCGC 2 cut(s) 714, 1122
Kzo9I GATC 4 cut(s) 134, 232, 557, 616
LmnI GCTCC 4 cut(s) 211, 655, 907, 928
Lsp1109I GCAGC 2 cut(s) 895, 1021
LweI GCATC 6 cut(s) 64, 301, 631, 694, 701, 1081
MaeI CTAG 3 cut(s) 87, 156, 1023
MaeII ACGT 2 cut(s) 736, 1033
MaeIII GTNAC 4 cut(s) 503, 1034, 1106, 1114
MalI GATC 4 cut(s) 136, 234, 559, 618
MboI GATC 4 cut(s) 134, 232, 557, 616
MboII GAAGA 7 cut(s) 191, 276, 477, 478, 513, 536, 1011
MflI RGATCY 1 cut(s) 557
MluCI AATT 7 cut(s) 315, 670, 725, 830, 852, 935, 1061
MlyI GAGTC 3 cut(s) 205, 287, 491
MmeI TCCRAC 1 cut(s) 921
Mph1103I ATGCAT 1 cut(s) 694
MroXI GAANNNNTTC 1 cut(s) 517
MseI TTAA 2 cut(s) 318, 422
MslI CAYNNNNRTG 1 cut(s) 1089
MspA1I CMGCKG 1 cut(s) 886
MspI CCGG 1 cut(s) 248
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 6 cut(s) 61, 270, 713, 797, 1009, 1128
NdeI CATATG 2 cut(s) 304, 688
NdeII GATC 4 cut(s) 134, 232, 557, 616
NlaIII CATG 4 cut(s) 431, 480, 641, 865
NmeAIII GCCGAG 1 cut(s) 847
NmuCI GTSAC 2 cut(s) 1106, 1114
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 1 cut(s) 431
PdmI GAANNNNTTC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 626, 847, 1055
PflFI GACNNNGTC 1 cut(s) 1112
PkrI GCNGC 2 cut(s) 885, 1011
PleI GAGTC 3 cut(s) 204, 287, 490
PpsI GAGTC 3 cut(s) 204, 287, 490
PshBI ATTAAT 1 cut(s) 318
Psp1406I AACGTT 1 cut(s) 736
PspPI GGNCC 2 cut(s) 632, 1102
PsuI RGATCY 1 cut(s) 557
PsyI GACNNNGTC 1 cut(s) 1112
RsaI GTAC 1 cut(s) 356
RsaNI GTAC 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 1089
SaqAI TTAA 2 cut(s) 318, 422
SatI GCNGC 2 cut(s) 884, 1010
Sau3AI GATC 4 cut(s) 134, 232, 557, 616
Sau96I GGNCC 2 cut(s) 632, 1102
SchI GAGTC 3 cut(s) 205, 287, 491
SfaNI GCATC 6 cut(s) 64, 301, 631, 694, 701, 1081
SfcI CTRYAG 1 cut(s) 597
SmiMI CAYNNNNRTG 1 cut(s) 1089
SmlI CTYRAG 3 cut(s) 345, 396, 878
SmoI CTYRAG 3 cut(s) 345, 396, 878
Sse9I AATT 7 cut(s) 315, 670, 725, 830, 852, 935, 1061
SsiI CCGC 3 cut(s) 572, 886, 1100
SspMI CTAG 3 cut(s) 87, 156, 1023
TaaI ACNGT 2 cut(s) 278, 551
TaiI ACGT 2 cut(s) 739, 1036
TasI AATT 7 cut(s) 315, 670, 725, 830, 852, 935, 1061
TatI WGTACW 1 cut(s) 354
TfiI GAWTC 3 cut(s) 626, 847, 1055
Tru1I TTAA 2 cut(s) 318, 422
Tru9I TTAA 2 cut(s) 318, 422
TseFI GTSAC 2 cut(s) 1106, 1114
TseI GCWGC 2 cut(s) 883, 1009
Tsp45I GTSAC 2 cut(s) 1106, 1114
TspDTI ATGAA 2 cut(s) 9, 423
Tth111I GACNNNGTC 1 cut(s) 1112
VspI ATTAAT 1 cut(s) 318
XagI CCTNNNNNAGG 2 cut(s) 129, 1116
XapI RAATTY 1 cut(s) 830
XceI RCATGY 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 517
XspI CTAG 3 cut(s) 87, 156, 1023
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.